Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0283341 Rosa chinensis HOM05D006091 ORTHO05D006421 1.3e-111 406.4 194 100.0
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 2.8e-95 352.1 184 93.5
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 1.3e-84 316.6 191 84.8
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 1.3e-84 316.6 191 84.8
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 2.9e-84 315.5 191 84.8
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 7.9e-82 307.4 193 82.9
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 2.0e-77 292.7 185 78.9
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 3.5e-77 292.0 189 77.2
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 1.8e-73 279.6 191 72.3
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 1.1e-70 270.4 190 71.6
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 5.3e-70 268.1 189 71.4
GSVIVG01002194001 Vitis vinifera HOM05D006091 ORTHO05D006421 2.7e-69 265.8 172 78.5
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 1.0e-68 263.8 184 72.3
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 2.9e-68 262.3 182 72.5
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 3.8e-68 261.9 172 73.8
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 6.5e-68 261.2 172 75.0
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 1.1e-67 260.4 182 72.0
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 5.5e-67 258.1 172 72.7
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 9.4e-67 257.3 182 71.4
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 1.2e-66 256.9 171 73.7
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 1.6e-66 256.5 182 71.4
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 2.7e-66 255.8 173 72.8
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.0e-65 253.8 171 72.5
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 1.0e-65 253.8 171 72.5
TPR.G1980 Trifolium pratense HOM05D006091 ORTHO05D006421 1.4e-65 253.4 183 71.0
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 1.8e-65 253.1 190 67.4
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.8e-65 253.1 171 72.5
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 8.8e-65 250.8 172 72.1
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 2.0e-64 249.6 182 68.7
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 1.7e-63 246.5 185 65.9
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 2.8e-63 245.7 191 68.1
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 3.7e-63 245.4 175 72.6
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 3.7e-63 245.4 187 67.4
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 3.7e-63 245.4 187 67.4
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 3.7e-63 245.4 187 67.4
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 4.8e-63 245.0 172 72.7
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 7.0e-62 241.1 173 68.2
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 9.1e-62 240.7 174 70.7
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 1.2e-61 240.4 170 67.6
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 1.2e-61 240.4 170 67.6
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 2.7e-61 239.2 170 68.8
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 4.5e-61 238.4 172 72.1
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 5.9e-61 238.0 185 63.8
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 5.9e-61 238.0 170 66.5
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 5.9e-61 238.0 175 68.6
Nitab4.5_0009574g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 5.9e-61 238.0 184 66.8
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 7.7e-61 237.7 188 62.8
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.0e-60 237.3 191 66.5
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 6.5e-60 234.6 170 66.5
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 8.5e-60 234.2 192 64.1
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 8.5e-60 234.2 178 67.4
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 8.5e-60 234.2 174 67.8
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 1.5e-59 233.4 170 65.9
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 1.5e-59 233.4 170 65.9
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 1.5e-59 233.4 183 66.1
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 3.2e-59 232.3 177 69.5
Phvul.010G030600 Phaseolus vulgaris HOM05D006091 ORTHO05D006421 7.2e-59 231.1 176 67.0
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 7.2e-59 231.1 170 65.9
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 1.2e-58 230.3 178 65.7
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 1.2e-58 230.3 178 65.7
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 1.6e-58 229.9 170 64.1
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 1.6e-58 229.9 176 66.5
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 1.6e-58 229.9 185 66.5
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 1.6e-58 229.9 174 66.1
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 2.1e-58 229.6 174 68.4
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 3.6e-58 228.8 176 65.3
TAR362G0363 Trochodendron aralioides HOM05D006091 ORTHO05D006421 4.7e-58 228.4 172 68.0
Hma1.2p1_2027F.1_g311640 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 6.1e-58 228.0 172 69.8
ECA246G1360 Erigeron canadensis HOM05D006091 ORTHO05D006421 6.8e-57 224.6 174 67.2
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 2.0e-56 223.0 172 65.7
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 5.7e-56 221.5 178 62.4
Cpa.g.sc8.88 Carica papaya HOM05D006091 ORTHO05D006421 1.3e-55 220.3 303 43.9
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 2.8e-55 219.2 175 64.0
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 6.3e-55 218.0 195 61.0
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 2.4e-54 216.1 189 58.2
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 2.4e-54 216.1 174 63.2
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 9.2e-54 214.2 170 64.1
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 4.5e-53 211.8 176 62.5
EL10Ac7g17981 Beta vulgaris HOM05D006091 ORTHO05D006421 1.7e-52 209.9 171 61.4
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 2.3e-52 209.5 184 58.7
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 6.6e-52 208.0 152 65.1
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 6.6e-52 208.0 194 58.2
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 1.1e-46 190.7 190 53.7
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 4.6e-45 185.3 174 51.7
SEGI_30787 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 2.5e-43 179.5 133 68.4
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 8.9e-41 171.0 151 59.6
SMO117G0101 Selaginella moellendorffii HOM05D006091 ORTHO05D006421 9.8e-40 167.5 146 58.2
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 3.2e-38 162.5 172 50.0
Mapoly0057s0040 Marchantia polymorpha HOM05D006091 ORTHO05D006421 1.6e-37 160.2 195 45.1
SEGI_05193 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 8.6e-36 154.5 131 60.3
Pp3c23_8470 Physcomitrium patens HOM05D006091 ORTHO05D006421 7.5e-32 141.4 176 46.6
CBR_g54770 Chara braunii HOM05D006091 ORTHO05D006421 4.9e-31 138.7 124 57.3
PGR083G0226 Punica granatum HOM05D006091 ORTHO05D006421 2.7e-29 132.9 92 68.5
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 6.0e-29 131.7 142 49.3
Eucgr.H00733 Eucalyptus grandis HOM05D006091 ORTHO05D006421 1.7e-28 130.2 94 67.0
vmacro06989 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 5.1e-28 128.6 94 62.8
CDE05G1763 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 3.4e-24 115.9 122 49.2
Eucgr.H00736 Eucalyptus grandis HOM05D006091 ORTHO05D006421 1.7e-23 113.6 93 60.2
BcaC05g29730 Brassica carinata HOM05D006091 ORTHO05D006421 6.4e-23 111.7 92 58.7
CAN.G99.1 Capsicum annuum HOM05D006091 ORTHO05D006421 1.2e-21 107.5 100 60.0
MBI07_g21346_MAGBIO Magnolia biondii HOM05D006091 ORTHO05D006421 6.6e-20 101.7 93 63.4
Haze_03314 Corylus avellana HOM05D006091 ORTHO05D006421 4.6e-13 79.0 60 68.3
Manes.12G052100 Manihot esculenta HOM05D006091 ORTHO05D006421 1.3e-12 77.4 49 77.6
Nn1g08059 Nelumbo nucifera HOM05D006091 ORTHO05D006421 1.9e-11 73.6 53 69.8
BraA05t22811Z Brassica rapa HOM05D000328 ORTHO05D000191 9.0e-09 64.7 37 73.0


User provided reference genes

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