Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0283131 Rosa chinensis HOM05D006769 ORTHO05D008522 4.0e-184 647.9 310 100.0
FvH4_2g17880 Fragaria vesca HOM05D006769 ORTHO05D008522 6.4e-150 534.3 280 88.6
FAN24G2350 Fragaria x ananassa HOM05D006769 ORTHO05D008522 2.7e-148 528.9 280 87.9
FAN15G1712 Fragaria x ananassa HOM05D006769 ORTHO05D008522 3.5e-148 528.5 280 87.1
FAN27G3257 Fragaria x ananassa HOM05D006769 ORTHO05D008522 3.0e-147 525.4 280 87.5
Prupe.8G191400 Prunus persica HOM05D006769 ORTHO05D008522 2.8e-137 492.3 280 82.5
MD05G1163100 Malus domestica HOM05D006769 ORTHO05D008522 4.7e-137 491.5 280 84.3
QL09p046131 Quercus lobata HOM05D006769 ORTHO05D008522 5.6e-122 441.4 300 72.7
CiPaw.13G054700 Carya illinoinensis HOM05D006769 ORTHO05D008522 5.3e-120 434.9 286 74.5
Thecc.01G211800 Theobroma cacao HOM05D006769 ORTHO05D008522 2.9e-118 429.1 284 71.1
Glyma.08G344800 Glycine max HOM05D006769 ORTHO05D008522 4.2e-117 425.2 278 73.0
Cfa010337 Carpinus fangiana HOM05D006769 ORTHO05D008522 1.2e-116 423.7 286 72.4
Actinidia30020 Actinidia chinensis HOM05D006769 ORTHO05D008522 2.1e-116 422.9 292 70.9
Potri.002G250400 Populus trichocarpa HOM05D006769 ORTHO05D008522 3.5e-116 422.2 284 70.8
CANSAT01G2880 Cannabis sativa HOM05D006769 ORTHO05D008522 4.6e-116 421.8 280 72.5
Gohir.D07G166800 Gossypium hirsutum HOM05D006769 ORTHO05D008522 7.9e-116 421.0 280 70.7
Atru.chr6.1512 Acer truncatum HOM05D006769 ORTHO05D008522 1.3e-115 420.2 280 73.2
CsaV3_7G026790 Cucumis sativus L. HOM05D006769 ORTHO05D008522 1.8e-115 419.9 280 70.4
Medtr7g052250 Medicago truncatula HOM05D006769 ORTHO05D008522 1.8e-115 419.9 285 70.2
GSVIVG01006251001 Vitis vinifera HOM05D006769 ORTHO05D008522 1.8e-115 419.9 280 72.9
Lj1g0001413 Lotus japonicus HOM05D006769 ORTHO05D008522 3.0e-115 419.1 280 70.0
Duzib138G0404 Durio zibethinus HOM05D006769 ORTHO05D008522 5.1e-115 418.3 284 72.2
TWI18G0992 Tripterygium wilfordii HOM05D006769 ORTHO05D008522 5.1e-115 418.3 257 75.9
Manes.12G053000 Manihot esculenta HOM05D006769 ORTHO05D008522 6.7e-115 417.9 279 72.8
arahy.Tifrunner.gnm1.ann1.ADK8RR Arachis hypogaea HOM05D006769 ORTHO05D008522 8.7e-115 417.5 260 75.8
arahy.Tifrunner.gnm1.ann1.N7FX8W Arachis hypogaea HOM05D006769 ORTHO05D008522 1.1e-114 417.2 260 75.8
Phvul.008G137400 Phaseolus vulgaris HOM05D006769 ORTHO05D008522 4.3e-114 415.2 278 71.2
MSTRG.12754 Avicennia marina HOM05D006769 ORTHO05D008522 9.6e-114 414.1 281 70.5
ClCG09G008260 Citrullus lanatus HOM05D006769 ORTHO05D008522 1.3e-113 413.7 280 69.3
Hma1.2p1_0161F.1_g071350 Hydrangea macrophylla HOM05D006769 ORTHO05D008522 1.3e-113 413.7 294 67.7
Dinv12798 Davidia involucrata HOM05D006769 ORTHO05D008522 6.2e-113 411.4 307 66.8
ECA248G0008 Erigeron canadensis HOM05D006769 ORTHO05D008522 8.2e-113 411.0 278 70.1
Ca_07395_v3 Cicer arietinum L. HOM05D006769 ORTHO05D008522 1.8e-112 409.8 260 74.6
Gorai.N003700 Gossypium raimondii HOM05D006769 ORTHO05D008522 1.8e-112 409.8 286 68.9
Psat3g151240 Pisum sativum HOM05D006769 ORTHO05D008522 1.8e-112 409.8 287 68.6
Sc05g0001770 Simmondsia chinensis HOM05D006769 ORTHO05D008522 1.8e-112 409.8 287 70.4
PGR044G2601 Punica granatum HOM05D006769 ORTHO05D008522 6.9e-112 407.9 303 67.0
Lalb_Chr03g0041161 Lupinus albus HOM05D006769 ORTHO05D008522 9.0e-112 407.5 271 72.7
Nn1g08265 Nelumbo nucifera HOM05D006769 ORTHO05D008522 4.5e-111 405.2 277 70.0
PSO170G1917 Papaver somniferum HOM05D006769 ORTHO05D008522 7.6e-111 404.4 259 72.6
CAN.G188.2 Capsicum annuum HOM05D006769 ORTHO05D008522 1.7e-110 403.3 289 68.2
Eucgr.K02091 Eucalyptus grandis HOM05D006769 ORTHO05D008522 3.8e-110 402.1 257 75.9
Migut.N00662 Erythranthe guttata HOM05D006769 ORTHO05D008522 2.5e-109 399.4 261 73.6
THA.LOC104819455 Tarenaya hassleriana HOM05D006769 ORTHO05D008522 2.5e-109 399.4 288 67.4
TPR.G26832 Trifolium pratense HOM05D006769 ORTHO05D008522 9.3e-109 397.5 267 72.3
Hund02792 Selenicereus undatus HOM05D006769 ORTHO05D008522 1.0e-107 394.0 254 72.8
AT2G26470 Arabidopsis thaliana HOM05D006769 ORTHO05D008522 1.1e-106 390.6 292 64.7
DCAR_004766 Daucus carota HOM05D006769 ORTHO05D008522 1.5e-106 390.2 294 63.6
Cc01_g16210 Coffea canephora HOM05D006769 ORTHO05D008522 3.3e-106 389.0 278 66.9
Lj2A1118G65 Lonicera japonica HOM05D006769 ORTHO05D008522 3.3e-106 389.0 337 59.9
AUR62028711 Chenopodium quinoa HOM05D006769 ORTHO05D008522 4.3e-106 388.7 258 71.7
HanXRQChr01g0007211 Helianthus annuus HOM05D006769 ORTHO05D008522 2.2e-105 386.3 281 67.6
Aqoxy5G00037 Aquilegia oxysepala HOM05D006769 ORTHO05D008522 2.8e-105 386.0 266 70.7
CARHR294500 Cardamine hirsuta HOM05D006769 ORTHO05D008522 3.7e-105 385.6 295 64.1
Aa31LG5G9400 Aethionema arabicum HOM05D006769 ORTHO05D008522 6.3e-105 384.8 278 65.1
Carub.0004s0653 Capsella rubella HOM05D006769 ORTHO05D008522 8.2e-105 384.4 292 64.4
BcaC07g40819 Brassica carinata HOM05D006769 ORTHO05D008522 3.1e-104 382.5 257 68.5
C08p38120 Brassica napus HOM05D006769 ORTHO05D008522 3.1e-104 382.5 257 68.5
AUR62008129 Chenopodium quinoa HOM05D006769 ORTHO05D008522 5.3e-104 381.7 291 64.6
Oeu003634.1 Olea europaea HOM05D006769 ORTHO05D008522 9.0e-104 380.9 328 58.8
SHI10304 Sapria himalayana HOM05D006769 ORTHO05D008522 9.0e-104 380.9 271 67.9
AL4G19290 Arabidopsis lyrata HOM05D006769 ORTHO05D008522 2.0e-103 379.8 276 63.8
EL10Ac5g10636 Beta vulgaris HOM05D006769 ORTHO05D008522 4.5e-103 378.6 258 70.2
A09p55190 Brassica napus HOM05D006769 ORTHO05D008522 4.5e-103 378.6 258 68.6
BraA09t40927Z Brassica rapa HOM05D006769 ORTHO05D008522 4.5e-103 378.6 258 68.6
BolC8t51387H Brassica oleracea HOM05D006769 ORTHO05D008522 1.7e-102 376.7 262 67.2
Sp6g10380 Schrenkiella parvula HOM05D006769 ORTHO05D008522 3.8e-102 375.6 276 64.5
Ah.11g051100 Amaranthus hybridus HOM05D006769 ORTHO05D008522 5.0e-102 375.2 281 65.5
Carub.0004s0639 Capsella rubella HOM05D006769 ORTHO05D008522 5.0e-102 375.2 292 63.0
TAR365G1082 Trochodendron aralioides HOM05D006769 ORTHO05D008522 5.0e-102 375.2 286 65.4
BcaB08g35324 Brassica carinata HOM05D006769 ORTHO05D008522 6.5e-102 374.8 270 65.9
Thhalv10003450m.g Eutrema salsugineum HOM05D006769 ORTHO05D008522 8.5e-102 374.4 279 64.5
Nitab4.5_0008509g0020 Nicotiana tabacum HOM05D006769 ORTHO05D008522 8.5e-102 374.4 308 62.7
unitig_37.g12548 Utricularia gibba HOM05D006769 ORTHO05D008522 2.5e-101 372.9 280 65.4
ATR0609G088 Amborella trichopoda HOM05D006769 ORTHO05D008522 3.2e-101 372.5 277 65.7
SalBow3G4668 Salvia bowleyana HOM05D006769 ORTHO05D008522 9.3e-101 370.9 264 68.2
Rhsim13G0052300 Rhododendron simsii HOM05D006769 ORTHO05D008522 5.7e-98 361.7 263 68.8
SEGI_34173 Sequoiadendron giganteum HOM05D006769 ORTHO05D008522 1.3e-97 360.5 262 64.5
vmacro21305 Vaccinium macrocarpon HOM05D006769 ORTHO05D008522 1.1e-88 330.9 317 56.5
SMO241G0010 Selaginella moellendorffii HOM05D006769 ORTHO05D008522 9.1e-88 327.8 283 58.3
AagrBONN_evm.TU.Sc2ySwM_344.907 Anthoceros agrestis HOM05D006769 ORTHO05D008522 1.3e-86 323.9 266 59.0
Lsat_1_v5_gn_5_178440 Lactuca sativa HOM05D006769 ORTHO05D008522 2.1e-84 316.6 257 60.7
HPP92_009961 Vanilla planifolia HOM05D006769 ORTHO05D008522 4.7e-84 315.5 284 57.4
Pp3c12_23250 Physcomitrium patens HOM05D006769 ORTHO05D008522 2.0e-79 300.1 268 54.5
CSS0037741 Camellia sinensis var. sinensis HOM05D006769 ORTHO05D008522 2.6e-79 299.7 174 81.6
VMungo1383G2812 Vigna mungo HOM05D006769 ORTHO05D008522 3.8e-78 295.8 192 74.0
Gohir.A07G159600 Gossypium hirsutum HOM05D006769 ORTHO05D008522 1.2e-76 290.8 195 71.3
HanXRQChr01g0007221 Helianthus annuus HOM05D006769 ORTHO05D008522 1.2e-76 290.8 334 49.4
Cpa.g.sc8.80 Carica papaya HOM05D006769 ORTHO05D008522 4.7e-76 288.9 207 69.6
Peaxi162Scf00335g01510 Petunia axillaris HOM05D006769 ORTHO05D008522 4.0e-75 285.8 182 75.3
Zm00001eb090430 Zea mays HOM05D006769 ORTHO05D008522 5.2e-75 285.4 253 57.7
Sed0011761 Sechium edule HOM05D006769 ORTHO05D008522 2.3e-67 260.0 271 50.6
Ciclev10032230m.g Citrus clementina HOM05D006769 ORTHO05D008522 1.2e-66 257.7 165 75.2
CBR_g20401 Chara braunii HOM05D006769 ORTHO05D008522 3.5e-63 246.1 232 51.7
Haze_03306 Corylus avellana HOM05D006769 ORTHO05D008522 1.0e-62 244.6 142 78.9
Hma1.2p1_0161F.1_g071340 Hydrangea macrophylla HOM05D006769 ORTHO05D008522 6.8e-59 231.9 185 61.1
SEGI_18025 Sequoiadendron giganteum HOM05D006769 ORTHO05D008522 1.7e-57 227.3 164 64.6
Mapoly0021s0139 Marchantia polymorpha HOM05D006769 ORTHO05D008522 1.1e-56 224.6 200 56.5
Nitab4.5_0000038g0100 Nicotiana tabacum HOM05D006769 ORTHO05D008522 1.1e-53 214.5 279 47.7
CDE09G0834 Ceratophyllum demersum HOM05D006769 ORTHO05D008522 9.5e-53 211.5 280 45.0
Os06g0470800 Oryza sativa ssp. japonica HOM05D006769 ORTHO05D008522 9.5e-53 211.5 178 60.7
MCO07G255 Micromonas commoda HOM05D006769 ORTHO05D008522 2.0e-50 203.8 257 44.0
Haze_03305 Corylus avellana HOM05D006769 ORTHO05D008522 4.1e-48 196.1 115 80.0
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.3e-41 174.5 120 74.2
QL09p046008 Quercus lobata HOM05D006769 ORTHO05D008522 3.2e-40 169.9 91 85.7
PRCOL_00005345 Prasinoderma coloniale HOM05D006769 ORTHO05D008522 4.4e-34 149.4 281 34.5
VMungo1383G3069 Vigna mungo HOM05D006769 ORTHO05D008522 1.7e-30 137.5 89 68.5
Cfa021866 Carpinus fangiana HOM05D006769 ORTHO05D008522 3.0e-30 136.7 235 39.1
Cpa.g.sc8.79 Carica papaya HOM05D006769 ORTHO05D008522 5.6e-29 132.5 86 70.9
Cre09.g410000 Chlamydomonas reinhardtii HOM05D006769 ORTHO05D008522 8.1e-28 128.6 136 47.1
SGA_v2.0_scaffold77G25292 Striga asiatica HOM05D006769 ORTHO05D008522 3.2e-24 116.7 104 54.8
CSS0014368 Camellia sinensis var. sinensis HOM05D006769 ORTHO05D008522 4.1e-24 116.3 137 48.9
MD10G1152700 Malus domestica HOM05D006769 ORTHO05D008522 9.2e-24 115.2 147 47.6
CDE02G1388 Ceratophyllum demersum HOM05D007934 ORTHO05D010067 2.5e-21 107.1 86 57.0
Prupe.2G270900 Prunus persica HOM05D006769 ORTHO05D008522 1.6e-12 77.8 57 59.6
Prupe.6G190400 Prunus persica HOM05D006769 ORTHO05D008522 1.6e-12 77.8 47 66.0
vmacro02813 Vaccinium macrocarpon HOM05D006769 ORTHO05D008522 7.6e-10 68.9 91 47.3


User provided reference genes

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