Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 2.0e-95 352.4 182 100.0
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.2e-69 264.2 183 79.8
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.2e-69 264.2 183 80.3
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.2e-69 264.2 183 80.3
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 5.4e-64 248.1 168 81.0
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 1.2e-63 246.9 168 80.4
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 9.3e-24 114.4 164 45.1
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.5e-21 107.1 156 50.0
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.9e-21 106.7 156 50.0
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 5.6e-21 105.1 163 44.8
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 7.3e-21 104.8 155 42.6
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 1.3e-20 104.0 154 47.4
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 2.1e-20 103.2 157 49.7
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 2.8e-20 102.8 151 45.0
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 2.8e-20 102.8 168 44.0
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 8.1e-20 101.3 150 44.0
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 1.4e-19 100.5 155 46.5
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 1.8e-19 100.1 151 45.0
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 4.0e-19 99.0 151 46.4
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 5.3e-19 98.6 154 44.2
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 6.9e-19 98.2 152 42.8
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 6.9e-19 98.2 153 43.8
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 6.9e-19 98.2 155 43.2
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 1.2e-18 97.4 155 44.5
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 1.5e-18 97.1 153 45.1
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 2.0e-18 96.7 153 45.1
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 2.0e-18 96.7 156 44.2
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 2.0e-18 96.7 172 41.9
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 3.4e-18 95.9 150 42.0
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 4.5e-18 95.5 154 43.5
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 7.6e-18 94.7 127 47.2
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 9.9e-18 94.4 155 42.6
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 9.9e-18 94.4 162 40.7
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 1.7e-17 93.6 150 44.0
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 2.2e-17 93.2 153 44.4
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 2.9e-17 92.8 165 38.8
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 3.8e-17 92.4 153 43.1
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 4.9e-17 92.0 152 40.8
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 6.4e-17 91.7 150 44.0
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 6.4e-17 91.7 158 40.5
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 8.4e-17 91.3 155 45.2
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 8.4e-17 91.3 153 43.1
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 1.4e-16 90.5 151 43.0
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 1.4e-16 90.5 154 42.2
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.4e-16 90.5 155 44.5
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 1.9e-16 90.1 155 41.3
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.9e-16 90.1 154 42.9
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 2.4e-16 89.7 157 41.4
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 3.2e-16 89.4 164 39.6
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 3.2e-16 89.4 205 35.6
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 4.2e-16 89.0 154 39.6
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 4.2e-16 89.0 153 39.2
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 5.4e-16 88.6 153 37.9
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 5.4e-16 88.6 159 42.8
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 5.4e-16 88.6 166 41.6
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 7.1e-16 88.2 151 39.1
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 7.1e-16 88.2 159 42.8
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 9.3e-16 87.8 165 40.6
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 9.3e-16 87.8 166 39.8
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 1.2e-15 87.4 156 35.9
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 1.2e-15 87.4 160 35.6
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 1.2e-15 87.4 135 43.0
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 1.6e-15 87.0 164 42.7
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 1.6e-15 87.0 154 40.3
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 2.1e-15 86.7 157 38.9
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 2.1e-15 86.7 154 42.2
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 2.7e-15 86.3 154 38.3
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 2.7e-15 86.3 147 41.5
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 2.7e-15 86.3 157 40.8
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 2.7e-15 86.3 161 39.1
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 3.5e-15 85.9 152 40.8
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 3.5e-15 85.9 150 41.3
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 3.5e-15 85.9 156 40.4
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 3.5e-15 85.9 151 39.1
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 6.0e-15 85.1 150 40.7
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 6.0e-15 85.1 152 40.1
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 6.0e-15 85.1 128 43.8
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 6.0e-15 85.1 156 41.7
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 6.0e-15 85.1 156 41.7
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 6.0e-15 85.1 173 39.3
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 7.9e-15 84.7 155 39.4
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 1.0e-14 84.3 154 39.6
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 1.0e-14 84.3 152 42.1
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.3e-14 84.0 157 38.2
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 1.8e-14 83.6 153 40.5
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 2.3e-14 83.2 169 38.5
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 2.3e-14 83.2 154 37.0
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 3.9e-14 82.4 142 42.3
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 3.9e-14 82.4 152 38.8
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 6.7e-14 81.6 169 39.1
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 6.7e-14 81.6 150 38.0
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 6.7e-14 81.6 160 41.9
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 6.7e-14 81.6 168 39.9
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 1.1e-13 80.9 176 39.2
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 1.1e-13 80.9 153 37.9
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 1.1e-13 80.9 169 37.9
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.1e-13 80.9 124 38.7
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 1.9e-13 80.1 149 41.6
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 2.5e-13 79.7 149 38.9
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 2.5e-13 79.7 153 39.9
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 2.5e-13 79.7 181 37.0
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 3.3e-13 79.3 153 37.3
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 7.4e-13 78.2 158 41.1
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 1.3e-12 77.4 149 40.3
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 1.6e-12 77.0 144 38.2
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 2.8e-12 76.3 152 38.8
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 2.8e-12 76.3 155 37.4
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 3.6e-12 75.9 159 37.7
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 3.6e-12 75.9 159 37.7
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 1.1e-11 74.3 142 38.0
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.1e-11 74.3 153 36.6
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 3.1e-11 72.8 152 35.5
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 3.1e-11 72.8 116 41.4
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 3.1e-11 72.8 151 39.1
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 3.1e-11 72.8 164 35.4
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 4.0e-11 72.4 125 41.6
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 4.0e-11 72.4 164 35.4
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 6.9e-11 71.6 156 36.5
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 9.0e-11 71.2 155 36.8
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.2e-10 70.9 89 50.6
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.2e-10 70.9 89 50.6
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 1.5e-10 70.5 176 34.7
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 1.5e-10 70.5 123 39.8
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 2.0e-10 70.1 123 39.8
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 2.6e-10 69.7 123 39.8
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 3.4e-10 69.3 156 38.5
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 4.5e-10 68.9 154 37.0
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 7.6e-10 68.2 158 37.3
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 9.9e-10 67.8 151 38.4
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 1.7e-09 67.0 151 37.7
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 2.2e-09 66.6 153 34.0
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 2.2e-09 66.6 151 37.7
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 3.8e-09 65.9 127 39.4
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 4.9e-09 65.5 135 35.6
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 4.9e-09 65.5 126 38.9
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 1.4e-08 63.9 156 36.5
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 5.5e-08 62.0 163 34.4
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 5.5e-08 62.0 164 34.1
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 9.3e-08 61.2 127 37.0
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 9.3e-08 61.2 123 34.1
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 3.5e-07 59.3 153 32.7
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 4.6e-07 58.9 150 34.7
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 4.6e-07 58.9 127 37.0
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 7.9e-07 58.2 69 49.3
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 1.0e-06 57.8 124 35.5
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 1.0e-06 57.8 131 31.3
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 1.8e-06 57.0 127 36.2


User provided reference genes

Program Settings