Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.7e-134 482.6 245 100.0
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.3e-117 425.2 247 88.7
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 7.4e-117 424.1 247 87.9
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 9.6e-117 423.7 247 87.9
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.2e-111 406.8 265 80.8
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.9e-90 334.7 187 88.2
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 9.7e-77 290.8 245 61.2
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.6e-74 283.5 244 59.8
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 3.1e-67 259.2 242 56.6
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 1.6e-66 256.9 242 56.6
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 3.5e-66 255.8 242 56.6
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 5.0e-65 251.9 244 54.5
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.1e-64 250.8 239 54.4
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 1.5e-64 250.4 242 57.0
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 4.7e-63 245.4 244 54.5
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.2e-62 241.9 244 54.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 6.8e-62 241.5 243 53.5
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 4.4e-61 238.8 244 54.5
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 5.7e-61 238.4 242 55.0
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 9.8e-61 237.7 242 53.7
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 3.7e-60 235.7 246 52.4
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 6.3e-60 235.0 220 55.9
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.1e-59 234.2 244 54.1
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.4e-59 233.8 240 52.1
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.4e-59 233.8 242 54.1
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.4e-59 233.8 243 51.0
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.4e-59 233.0 218 52.8
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.4e-59 233.0 212 54.7
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.2e-58 230.7 242 52.9
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.7e-58 229.6 244 50.8
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 5.9e-58 228.4 242 52.5
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.3e-57 227.3 196 56.1
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.3e-57 226.5 242 52.9
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.3e-57 226.5 245 51.0
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.8e-57 225.7 242 52.1
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.6e-57 224.6 241 50.6
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 8.6e-57 224.6 243 49.8
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 8.6e-57 224.6 206 58.3
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 3.2e-56 222.6 194 59.8
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.2e-56 222.6 242 50.0
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 9.5e-56 221.1 209 54.1
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 9.5e-56 221.1 200 56.0
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-55 220.7 209 54.1
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-55 220.7 209 54.1
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-55 220.7 209 54.1
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.1e-55 219.9 192 55.2
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.8e-55 219.5 242 48.8
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 6.1e-55 218.4 208 57.2
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 8.0e-55 218.0 244 46.7
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 8.0e-55 218.0 242 51.2
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.0e-54 217.6 244 50.4
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.4e-54 217.2 197 54.8
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.3e-54 216.5 245 52.2
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.0e-54 216.1 243 51.0
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 3.0e-54 216.1 242 47.1
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.0e-54 216.1 242 48.8
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 4.0e-54 215.7 194 55.7
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 4.0e-54 215.7 189 59.3
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 4.0e-54 215.7 245 49.4
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 6.8e-54 214.9 242 47.1
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.2e-53 214.2 244 52.0
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.0e-53 213.4 223 48.9
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 7.5e-53 211.5 243 50.2
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 7.5e-53 211.5 206 57.3
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 9.8e-53 211.1 244 50.0
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 9.8e-53 211.1 194 53.6
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.3e-52 210.7 244 48.4
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 1.7e-52 210.3 244 49.2
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.8e-52 209.5 197 53.8
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 4.9e-52 208.8 244 45.9
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 4.9e-52 208.8 240 49.6
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 6.3e-52 208.4 195 52.3
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 6.3e-52 208.4 195 52.3
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.1e-51 207.6 194 52.6
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.8e-51 206.8 195 52.3
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.8e-51 206.8 195 52.3
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 2.4e-51 206.5 199 54.8
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.4e-51 206.5 205 53.7
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 4.1e-51 205.7 194 51.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 5.4e-51 205.3 194 51.5
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 5.4e-51 205.3 247 45.7
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 5.4e-51 205.3 192 54.2
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 7.0e-51 204.9 194 51.5
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 7.0e-51 204.9 242 46.3
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.2e-50 204.1 206 53.9
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.2e-50 204.1 243 46.5
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.6e-50 203.8 182 53.3
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.6e-50 203.8 198 53.0
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 2.0e-50 203.4 244 47.1
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 2.7e-50 203.0 188 53.2
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 2.7e-50 203.0 188 52.7
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 3.5e-50 202.6 208 51.0
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 4.5e-50 202.2 244 43.9
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 4.5e-50 202.2 244 43.9
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 7.8e-50 201.4 197 51.8
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.0e-49 201.1 195 52.3
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.3e-49 200.7 247 46.2
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.8e-49 199.1 244 44.3
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.6e-49 198.0 248 48.4
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 8.6e-49 198.0 196 51.0
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 4.3e-48 195.7 217 48.4
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 3.6e-47 192.6 263 44.9
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 3.6e-47 192.6 201 47.3
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 4.7e-47 192.2 242 44.6
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 5.2e-46 188.7 199 47.7
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 5.2e-46 188.7 276 42.0
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 2.0e-45 186.8 259 42.5
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.0e-45 186.8 222 45.0
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 4.4e-45 185.7 242 43.4
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.3e-44 184.1 243 46.1
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.7e-44 183.7 243 45.7
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 4.9e-44 182.2 192 51.0
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 3.0e-41 172.9 151 54.3
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 5.0e-41 172.2 159 56.0
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 7.3e-40 168.3 196 47.4
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.6e-39 166.0 159 52.2
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 8.9e-38 161.4 180 47.8
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.6e-37 159.8 180 47.8
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 4.4e-37 159.1 209 44.5
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 5.8e-37 158.7 205 42.4
FAN27G0705 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.8e-37 157.9 247 42.9
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.9e-35 153.7 142 51.4
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.6e-34 150.6 123 58.5
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 5.0e-33 145.6 149 51.0
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.5e-32 143.3 201 41.3
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.3e-32 142.9 151 47.0
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 6.2e-31 138.7 131 55.0
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 2.3e-30 136.7 200 39.5
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 5.2e-30 135.6 207 37.7
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 1.2e-29 134.4 230 37.8
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 5.8e-29 132.1 204 38.7
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 3.0e-25 119.8 198 36.4
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 8.9e-22 108.2 250 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 4.4e-21 105.9 178 34.8
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.9e-20 103.2 250 29.2
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 9.2e-19 98.2 115 47.8
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.0e-17 94.7 135 40.7
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.9e-17 92.8 77 61.0
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 9.0e-14 81.6 88 44.3
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.4e-12 75.5 88 38.6
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 1.1e-11 74.7 181 28.7
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 2.3e-09 67.0 72 47.2
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 5.6e-08 62.4 161 30.4


User provided reference genes

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