Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0282061 Rosa chinensis HOM05D000092 ORTHO05D019581 3.3e-101 371.7 184 100.0
FvH4_1g02750 Fragaria vesca HOM05D000092 ORTHO05D019581 3.8e-25 119.0 172 42.4
FAN19G2337 Fragaria x ananassa HOM05D000092 ORTHO05D019581 5.5e-24 115.2 172 41.9
FvH4_6g02760 Fragaria vesca HOM05D000092 ORTHO05D000042 7.9e-23 111.3 177 40.7
FAN14G4312 Fragaria x ananassa HOM05D002568 ORTHO05D002814 3.9e-22 109.0 179 39.1
FAN14G3488 Fragaria x ananassa HOM05D002568 ORTHO05D002814 2.0e-21 106.7 179 38.5
FvH4_4g35200 Fragaria vesca HOM05D000092 ORTHO05D000042 3.3e-21 105.9 167 40.7
FAN14G5341 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.3e-21 105.9 167 40.7
FAN12G3388 Fragaria x ananassa HOM05D002568 ORTHO05D000042 7.4e-21 104.8 167 40.7
FvH4_6g02820 Fragaria vesca HOM05D000092 ORTHO05D000042 2.8e-20 102.8 175 38.3
Dinv07581 Davidia involucrata HOM05D000092 ORTHO05D000042 6.3e-20 101.7 175 34.3
FAN14G1121 Fragaria x ananassa HOM05D000092 ORTHO05D000042 6.3e-20 101.7 170 37.6
FAN05G4643 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.1e-19 100.9 170 39.4
FAN14G0513 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.4e-19 100.5 170 38.8
Lj1C1089T10 Lonicera japonica HOM05D000092 ORTHO05D000042 1.2e-18 97.4 164 38.4
Dinv12837 Davidia involucrata HOM05D000092 ORTHO05D000042 3.4e-18 95.9 170 37.6
RcHm_v2.0_Chr6g0282051 Rosa chinensis HOM05D000092 ORTHO05D000042 5.9e-18 95.1 151 39.7
Dinv25002 Davidia involucrata HOM05D000092 ORTHO05D000042 2.5e-16 89.7 187 35.3
Dinv02874 Davidia involucrata HOM05D000092 ORTHO05D000042 4.2e-16 89.0 166 36.7
CSS0045612 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 9.4e-16 87.8 170 35.9
CSS0030965 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 1.2e-15 87.4 170 35.9
Dinv12836 Davidia involucrata HOM05D000092 ORTHO05D000042 1.2e-15 87.4 177 35.6
Dinv08417 Davidia involucrata HOM05D000092 ORTHO05D000042 1.6e-15 87.0 173 35.8
FvH4_2g36802 Fragaria vesca HOM05D000092 ORTHO05D000042 1.6e-15 87.0 154 40.9
CSS0026281 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 2.1e-15 86.7 169 36.7
CSS0029306 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 2.1e-15 86.7 169 36.7
Dinv07579 Davidia involucrata HOM05D000092 ORTHO05D000042 4.7e-15 85.5 172 33.7
CSS0042836 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 7.9e-15 84.7 173 34.1
FAN15G1645 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.0e-14 84.3 164 39.6
FvH4_6g02712 Fragaria vesca HOM05D002568 ORTHO05D002814 3.0e-14 82.8 139 37.4
CSS0004067 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 3.9e-14 82.4 168 35.7
Dinv05715 Davidia involucrata HOM05D000092 ORTHO05D000042 6.7e-14 81.6 159 37.1
CSS0022334 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 8.8e-14 81.3 184 32.6
FvH4_2g36800 Fragaria vesca HOM05D000092 ORTHO05D000042 1.5e-13 80.5 164 37.8
FAN14G0413 Fragaria x ananassa HOM05D002568 ORTHO05D002814 2.0e-13 80.1 132 37.9
FAN27G0069 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.7e-13 78.6 136 39.0
FvH4_2g17380 Fragaria vesca HOM05D000092 ORTHO05D019581 3.7e-12 75.9 167 33.5
MSTRG.28293 Avicennia marina HOM05D000092 ORTHO05D000042 6.3e-12 75.1 123 39.8
Dinv08246 Davidia involucrata HOM05D000092 ORTHO05D000042 6.3e-12 75.1 153 35.3
Dinv05714 Davidia involucrata HOM05D000092 ORTHO05D000042 3.1e-11 72.8 164 34.8
Hma1.2p1_0145F.1_g065170 Hydrangea macrophylla HOM05D000092 ORTHO05D000042 3.1e-11 72.8 162 30.9
Dinv07591 Davidia involucrata HOM05D000092 ORTHO05D000042 7.0e-11 71.6 201 30.3
Dinv10922 Davidia involucrata HOM05D000092 ORTHO05D000042 7.0e-11 71.6 108 42.6
CSS0017266 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 9.1e-11 71.2 159 37.7
FvH4_2g36860 Fragaria vesca HOM05D000092 ORTHO05D000042 1.2e-10 70.9 134 38.8
CSS0041436 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 1.6e-10 70.5 157 37.6
Dinv10937 Davidia involucrata HOM05D000092 ORTHO05D000042 2.6e-10 69.7 175 33.1
FAN20G0799 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.9e-10 68.6 134 37.3
Dinv18646 Davidia involucrata HOM05D000092 ORTHO05D000042 7.7e-10 68.2 202 28.7
Dinv26261 Davidia involucrata HOM05D000092 ORTHO05D000042 7.7e-10 68.2 202 28.7
Cc00_g13280 Coffea canephora HOM05D000092 ORTHO05D000042 1.0e-09 67.8 164 31.1
TPR.G18291 Trifolium pratense HOM05D000092 ORTHO05D000042 1.0e-09 67.8 119 34.5
Thecc.05G211500 Theobroma cacao HOM05D000092 ORTHO05D000042 1.3e-09 67.4 155 32.9
Manes.02G215405 Manihot esculenta HOM05D000092 ORTHO05D000042 1.7e-09 67.0 130 31.5
ECA233G4968 Erigeron canadensis HOM05D000092 ORTHO05D000042 2.9e-09 66.2 169 31.4
FAN27G1642 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.8e-09 65.9 163 30.7
arahy.Tifrunner.gnm1.ann1.E64HFU Arachis hypogaea HOM05D000092 ORTHO05D000042 5.0e-09 65.5 128 32.8
COL.COLO4_32833 Corchorus olitorius HOM05D000092 ORTHO05D000042 5.0e-09 65.5 179 31.8
Hma1.2p1_1517F.1_g288420 Hydrangea macrophylla HOM05D000092 ORTHO05D000042 6.5e-09 65.1 162 29.0
COL.COLO4_28603 Corchorus olitorius HOM05D000092 ORTHO05D000042 8.5e-09 64.7 174 27.0
QL03p003203 Quercus lobata HOM05D000092 ORTHO05D000042 8.5e-09 64.7 98 39.8
Dinv07585 Davidia involucrata HOM05D000092 ORTHO05D000042 1.1e-08 64.3 140 30.0
Haze_04282 Corylus avellana HOM05D000092 ORTHO05D000042 1.5e-08 63.9 165 30.9
HanXRQChr09g0260361 Helianthus annuus HOM05D000092 ORTHO05D000042 1.5e-08 63.9 169 34.3
MD11G1020500 Malus domestica HOM05D000092 ORTHO05D000042 1.5e-08 63.9 124 31.5
arahy.Tifrunner.gnm1.ann1.1W1XCQ Arachis hypogaea HOM05D000092 ORTHO05D000042 1.9e-08 63.5 124 32.3
Cc06_g19740 Coffea canephora HOM05D000092 ORTHO05D000042 1.9e-08 63.5 167 31.7
Eucgr.I02496 Eucalyptus grandis HOM05D000092 ORTHO05D000042 1.9e-08 63.5 171 31.6
Prupe.7G037500 Prunus persica HOM05D000092 ORTHO05D000042 1.9e-08 63.5 189 28.6
QL03p002957 Quercus lobata HOM05D000092 ORTHO05D000042 2.5e-08 63.2 96 38.5
Thecc.05G245100 Theobroma cacao HOM05D000092 ORTHO05D000042 3.2e-08 62.8 165 27.9
CSS0033810 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 4.2e-08 62.4 169 30.8
Medtr8g059275 Medicago truncatula HOM05D000092 ORTHO05D000042 4.2e-08 62.4 126 34.9
TPR.G23965 Trifolium pratense HOM05D000092 ORTHO05D000042 4.2e-08 62.4 121 33.9
Hma1.2p1_1517F.1_g288410 Hydrangea macrophylla HOM05D000092 ORTHO05D000042 5.5e-08 62.0 102 34.3
Lj3C14T0 Lonicera japonica HOM05D000092 ORTHO05D000042 5.5e-08 62.0 161 29.2
arahy.Tifrunner.gnm1.ann1.256JRY Arachis hypogaea HOM05D000092 ORTHO05D000042 7.2e-08 61.6 124 33.9
Glyma.18G226500 Glycine max HOM05D000092 ORTHO05D000042 7.2e-08 61.6 129 31.8
MBI18_g46232_MAGBIO Magnolia biondii HOM05D000092 ORTHO05D000042 7.2e-08 61.6 127 32.3
Medtr6g464030 Medicago truncatula HOM05D000092 ORTHO05D000042 7.2e-08 61.6 126 33.3
TPR.G29461 Trifolium pratense HOM05D000092 ORTHO05D000042 7.2e-08 61.6 125 34.4
arahy.Tifrunner.gnm1.ann1.6X8TD8 Arachis hypogaea HOM05D000092 ORTHO05D000042 9.4e-08 61.2 124 33.9
CSS0018500 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 9.4e-08 61.2 169 32.5
Cc00_g22090 Coffea canephora HOM05D000092 ORTHO05D000042 9.4e-08 61.2 85 36.5
MBI18_g21249_MAGBIO Magnolia biondii HOM05D000092 ORTHO05D000042 1.2e-07 60.8 127 32.3
PSO541G1157 Papaver somniferum HOM05D000092 ORTHO05D000042 1.2e-07 60.8 132 31.1
arahy.Tifrunner.gnm1.ann1.GBJR32 Arachis hypogaea HOM05D000092 ORTHO05D000042 1.6e-07 60.5 131 30.5
Medtr8g059325 Medicago truncatula HOM05D000092 ORTHO05D000042 1.6e-07 60.5 126 33.3
VMungo0331G0197 Vigna mungo HOM05D000092 ORTHO05D000042 1.6e-07 60.5 119 33.6
Glyma.18G226850 Glycine max HOM05D000092 ORTHO05D000042 2.1e-07 60.1 129 31.8
Lsat_1_v5_gn_0_10760 Lactuca sativa HOM05D000092 ORTHO05D000042 2.7e-07 59.7 107 39.3
Medtr2g089975 Medicago truncatula HOM05D000092 ORTHO05D000042 2.7e-07 59.7 126 35.7
arahy.Tifrunner.gnm1.ann1.M6Z2HS Arachis hypogaea HOM05D000092 ORTHO05D000042 3.6e-07 59.3 119 32.8
Haze_03350 Corylus avellana HOM05D000092 ORTHO05D000042 3.6e-07 59.3 174 27.6
Medtr6g463150 Medicago truncatula HOM05D000092 ORTHO05D000042 3.6e-07 59.3 127 36.2
Haze_23738 Corylus avellana HOM05D000092 ORTHO05D000042 6.1e-07 58.5 175 28.0
Dinv05438 Davidia involucrata HOM05D000092 ORTHO05D000042 6.1e-07 58.5 107 34.6
Medtr1g036820 Medicago truncatula HOM05D000092 ORTHO05D000042 8.0e-07 58.2 126 33.3
Cc00_g32840 Coffea canephora HOM05D000092 ORTHO05D000042 1.0e-06 57.8 169 30.2
Dinv20774 Davidia involucrata HOM05D000092 ORTHO05D000042 1.0e-06 57.8 141 31.9
HanXRQChr09g0267021 Helianthus annuus HOM05D000092 ORTHO05D000042 1.0e-06 57.8 159 32.7
Phvul.010G091100 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 1.0e-06 57.8 119 31.9
arahy.Tifrunner.gnm1.ann1.B59SCM Arachis hypogaea HOM05D000092 ORTHO05D000042 1.4e-06 57.4 134 35.1
Duzib177G1011 Durio zibethinus HOM05D000092 ORTHO05D000042 1.4e-06 57.4 144 31.9
Nn8g39379 Nelumbo nucifera HOM05D000092 ORTHO05D000089 1.4e-06 57.4 169 24.9
Thecc.09G244900 Theobroma cacao HOM05D000092 ORTHO05D000042 1.4e-06 57.4 180 27.2
VMungo1383G3284 Vigna mungo HOM05D000092 ORTHO05D000042 1.4e-06 57.4 129 29.5
Dinv03078 Davidia involucrata HOM05D000092 ORTHO05D000042 1.8e-06 57.0 156 28.8
Gohir.A01G047384 Gossypium hirsutum HOM05D000092 ORTHO05D000042 1.8e-06 57.0 129 30.2
Manes.07G062340 Manihot esculenta HOM05D000092 ORTHO05D000042 1.8e-06 57.0 143 28.7
Manes.07G062372 Manihot esculenta HOM05D000092 ORTHO05D000042 1.8e-06 57.0 177 27.7
arahy.Tifrunner.gnm1.ann1.QT2ZDW Arachis hypogaea HOM05D000092 ORTHO05D000042 2.3e-06 56.6 131 29.0
arahy.Tifrunner.gnm1.ann1.ZY7DZM Arachis hypogaea HOM05D000092 ORTHO05D000042 2.3e-06 56.6 114 31.6
Cc00_g13150 Coffea canephora HOM05D000092 ORTHO05D000042 2.3e-06 56.6 154 27.3
FAN11G0419 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.3e-06 56.6 183 28.4
Manes.07G062308 Manihot esculenta HOM05D000092 ORTHO05D000042 2.3e-06 56.6 157 29.3
Medtr0006s0240 Medicago truncatula HOM05D000092 ORTHO05D000042 2.3e-06 56.6 126 34.1
Medtr0006s0250 Medicago truncatula HOM05D000092 ORTHO05D000042 2.3e-06 56.6 126 34.1
Medtr1g037150 Medicago truncatula HOM05D000092 ORTHO05D000042 2.3e-06 56.6 126 34.1
Thecc.05G203100 Theobroma cacao HOM05D000092 ORTHO05D000042 2.3e-06 56.6 134 35.8
arahy.Tifrunner.gnm1.ann1.9B1DGQ Arachis hypogaea HOM05D000092 ORTHO05D000042 3.0e-06 56.2 121 34.7
CiPaw.16G081300 Carya illinoinensis HOM05D000092 ORTHO05D000042 3.0e-06 56.2 176 26.7
Haze_04283 Corylus avellana HOM05D000092 ORTHO05D000042 3.0e-06 56.2 165 27.9
Manes.02G215305 Manihot esculenta HOM05D000092 ORTHO05D000042 3.0e-06 56.2 148 31.1
Peaxi162Scf00014g00177 Petunia axillaris HOM05D000092 ORTHO05D000042 3.0e-06 56.2 168 26.2
QL11p008972 Quercus lobata HOM05D000092 ORTHO05D000042 3.0e-06 56.2 127 30.7
TPR.G13803 Trifolium pratense HOM05D000092 ORTHO05D000042 3.0e-06 56.2 133 31.6
COL.COLO4_25660 Corchorus olitorius HOM05D000092 ORTHO05D000042 4.0e-06 55.8 122 32.0
Dinv25006 Davidia involucrata HOM05D000092 ORTHO05D000042 4.0e-06 55.8 155 32.3
Dinv25011 Davidia involucrata HOM05D000092 ORTHO05D000042 4.0e-06 55.8 155 32.3
MBI19_g06403_MAGBIO Magnolia biondii HOM05D000092 ORTHO05D021231 4.0e-06 55.8 118 31.4
MD11G1019800 Malus domestica HOM05D000092 ORTHO05D000042 4.0e-06 55.8 124 30.6
Medtr0460s0010 Medicago truncatula HOM05D000092 ORTHO05D000042 4.0e-06 55.8 126 32.5
Medtr1g044020 Medicago truncatula HOM05D000092 ORTHO05D000042 4.0e-06 55.8 124 32.3
RcHm_v2.0_Chr4g0397781 Rosa chinensis HOM05D000092 ORTHO05D000042 4.0e-06 55.8 62 38.7
Ciclev10000111m.g Citrus clementina HOM05D000092 ORTHO05D000042 5.2e-06 55.5 147 29.9
Cc00_g15430 Coffea canephora HOM05D000092 ORTHO05D000042 5.2e-06 55.5 164 27.4
Duzib177G0001 Durio zibethinus HOM05D000092 ORTHO05D000042 5.2e-06 55.5 185 24.9
Manes.07G062404 Manihot esculenta HOM05D000092 ORTHO05D000042 5.2e-06 55.5 149 30.2
Medtr1g051585 Medicago truncatula HOM05D000092 ORTHO05D000042 5.2e-06 55.5 126 32.5
Medtr1g442750 Medicago truncatula HOM05D000092 ORTHO05D000042 5.2e-06 55.5 126 34.1
Phvul.010G091701 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 5.2e-06 55.5 119 31.9
Thecc.07G040500 Theobroma cacao HOM05D000092 ORTHO05D000042 5.2e-06 55.5 99 33.3
Thecc.07G053000 Theobroma cacao HOM05D000092 ORTHO05D000042 5.2e-06 55.5 84 34.5
Thecc.K0003600 Theobroma cacao HOM05D000092 ORTHO05D000042 5.2e-06 55.5 134 34.3
TPR.G17593 Trifolium pratense HOM05D000092 ORTHO05D000042 5.2e-06 55.5 121 31.4
TAR636G3578 Trochodendron aralioides HOM05D000092 ORTHO05D000042 5.2e-06 55.5 151 27.2
Actinidia38185 Actinidia chinensis HOM05D000092 ORTHO05D000042 6.7e-06 55.1 99 38.4
arahy.Tifrunner.gnm1.ann1.L8ULXE Arachis hypogaea HOM05D000092 ORTHO05D000042 6.7e-06 55.1 119 31.9
Dinv22271 Davidia involucrata HOM05D000092 ORTHO05D000042 6.7e-06 55.1 134 29.1
FAN11G3612 Fragaria x ananassa HOM05D000092 ORTHO05D000042 6.7e-06 55.1 165 25.5
Glyma.07G077700 Glycine max HOM05D000092 ORTHO05D000042 6.7e-06 55.1 114 35.1
Manes.07G062324 Manihot esculenta HOM05D000092 ORTHO05D000042 6.7e-06 55.1 178 27.5
TPR.G24374 Trifolium pratense HOM05D000092 ORTHO05D000042 6.7e-06 55.1 125 34.4
VMungo0166G0001 Vigna mungo HOM05D000092 ORTHO05D000042 6.7e-06 55.1 126 33.3
Cfa019907 Carpinus fangiana HOM05D000092 ORTHO05D000042 8.8e-06 54.7 175 26.9
Eucgr.L00094 Eucalyptus grandis HOM05D000092 ORTHO05D000042 8.8e-06 54.7 99 32.3
FAN11G0007 Fragaria x ananassa HOM05D000092 ORTHO05D000042 8.8e-06 54.7 67 35.8
Lju124A47T120 Lonicera japonica HOM05D000092 ORTHO05D000042 8.8e-06 54.7 141 30.5
Manes.02G215075 Manihot esculenta HOM05D000092 ORTHO05D000042 8.8e-06 54.7 94 34.0
PSO675G5866 Papaver somniferum HOM05D000092 ORTHO05D000042 8.8e-06 54.7 123 31.7
Potri.005G042400 Populus trichocarpa HOM05D000092 ORTHO05D000042 8.8e-06 54.7 154 29.2
Potri.005G042900 Populus trichocarpa HOM05D000092 ORTHO05D000042 8.8e-06 54.7 168 27.4
QL03p001664 Quercus lobata HOM05D000092 ORTHO05D000042 8.8e-06 54.7 168 28.0
TPR.G21218 Trifolium pratense HOM05D000092 ORTHO05D000042 8.8e-06 54.7 122 35.2


User provided reference genes

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