Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0281921 Rosa chinensis HOM05D000121 ORTHO05D345604 1.6e-33 145.6 76 100.0
RcHm_v2.0_Chr6g0286471 Rosa chinensis HOM05D000121 ORTHO05D000102 4.6e-25 117.5 72 84.7
FvH4_2g20350 Fragaria vesca HOM05D000121 ORTHO05D000102 2.9e-19 98.2 72 75.0
FAN24G3134 Fragaria x ananassa HOM05D000121 ORTHO05D000102 2.9e-19 98.2 72 75.0
FAN15G2278 Fragaria x ananassa HOM05D000121 ORTHO05D000102 3.7e-19 97.8 72 73.6
FAN27G3509 Fragaria x ananassa HOM05D000121 ORTHO05D000102 3.7e-19 97.8 72 73.6
Prupe.8G214600 Prunus persica HOM05D000121 ORTHO05D000102 3.7e-19 97.8 72 73.6
MD05G1187600 Malus domestica HOM05D000121 ORTHO05D000102 2.1e-14 82.0 72 69.4
Atru.chr5.1963 Acer truncatum HOM05D000121 ORTHO05D000102 1.1e-13 79.7 72 63.9
CANSAT01G0349 Cannabis sativa HOM05D000121 ORTHO05D000102 1.2e-12 76.3 72 63.9
MD10G1175300 Malus domestica HOM05D000121 ORTHO05D000102 1.2e-12 76.3 72 66.7
Ciclev10018479m.g Citrus clementina HOM05D000121 ORTHO05D000102 2.0e-12 75.5 72 62.5
Lj2A1142T80 Lonicera japonica HOM05D000121 ORTHO05D000102 9.9e-12 73.2 72 58.3
Carub.0003s3472 Capsella rubella HOM05D000121 ORTHO05D000102 1.3e-11 72.8 72 59.7
Manes.12G038500 Manihot esculenta HOM05D000121 ORTHO05D000102 1.7e-11 72.4 72 59.7
Thhalv10001878m.g Eutrema salsugineum HOM05D000121 ORTHO05D000102 4.9e-11 70.9 72 58.3
Sp3g33590 Schrenkiella parvula HOM05D000121 ORTHO05D000102 4.9e-11 70.9 72 58.3
Eucgr.K01420 Eucalyptus grandis HOM05D000121 ORTHO05D000102 8.4e-11 70.1 72 59.7
Manes.13G039000 Manihot esculenta HOM05D000121 ORTHO05D000102 1.1e-10 69.7 72 58.3
TAR349G0002 Trochodendron aralioides HOM05D000121 ORTHO05D000102 1.1e-10 69.7 72 54.2
Lj1g0025205 Lotus japonicus HOM05D000121 ORTHO05D000102 1.4e-10 69.3 72 58.3
PGR044G0294 Punica granatum HOM05D000121 ORTHO05D000102 1.4e-10 69.3 72 56.9
VMungo1383G3012 Vigna mungo HOM05D000121 ORTHO05D000102 1.4e-10 69.3 72 56.9
BcaB07g31593 Brassica carinata HOM05D000121 ORTHO05D000102 1.9e-10 68.9 72 56.9
TAR362G0555 Trochodendron aralioides HOM05D000121 ORTHO05D000102 2.4e-10 68.6 72 55.6
Phvul.001G165500 Phaseolus vulgaris HOM05D000121 ORTHO05D000102 3.2e-10 68.2 72 56.9
ClCG06G001370 Citrullus lanatus HOM05D000121 ORTHO05D000102 7.1e-10 67.0 72 55.6
Duzib138G0653 Durio zibethinus HOM05D000121 ORTHO05D000102 7.1e-10 67.0 72 58.3
Lalb_Chr01g0019481 Lupinus albus HOM05D000121 ORTHO05D000102 7.1e-10 67.0 72 55.6
Sed0009600 Sechium edule HOM05D000121 ORTHO05D000102 7.1e-10 67.0 72 55.6
TAR365G0005 Trochodendron aralioides HOM05D000121 ORTHO05D000102 9.2e-10 66.6 72 58.3
Duzib211G0391 Durio zibethinus HOM05D000121 ORTHO05D000102 1.2e-09 66.2 72 56.9
Medtr7g098690 Medicago truncatula HOM05D000121 ORTHO05D000102 1.2e-09 66.2 72 52.8
Actinidia37558 Actinidia chinensis HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 55.6
BcaC04g22797 Brassica carinata HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 55.6
A09p12850 Brassica napus HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 55.6
C09p15240 Brassica napus HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 55.6
BolC9t54429H Brassica oleracea HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 55.6
BraA09t36930Z Brassica rapa HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 55.6
Dinv19262 Davidia involucrata HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 56.9
Potri.002G255800 Populus trichocarpa HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 54.2
THA.LOC104814535 Tarenaya hassleriana HOM05D000121 ORTHO05D000102 1.6e-09 65.9 72 52.8
CiPaw.03G271700 Carya illinoinensis HOM05D000121 ORTHO05D000102 2.1e-09 65.5 72 56.9
Ca_08749_v3 Cicer arietinum L. HOM05D000121 ORTHO05D000102 2.7e-09 65.1 72 50.0
Lj5g0010778 Lotus japonicus HOM05D000121 ORTHO05D000102 3.5e-09 64.7 72 55.6
MELO3C022395.2 Cucumis melo HOM05D000121 ORTHO05D000102 4.6e-09 64.3 72 54.2
Sabra02G0194400 Salix brachista HOM05D000121 ORTHO05D000102 4.6e-09 64.3 72 54.2
Haze_24715 Corylus avellana HOM05D000121 ORTHO05D000102 6.0e-09 63.9 73 57.5
Glyma.03G167800 Glycine max HOM05D000121 ORTHO05D000102 1.0e-08 63.2 73 54.8
Nitab4.5_0000385g0010 Nicotiana tabacum HOM05D000121 ORTHO05D000102 1.0e-08 63.2 72 52.8
Rhsim01G0259800 Rhododendron simsii HOM05D000121 ORTHO05D000102 1.0e-08 63.2 72 54.2
Sed0021131 Sechium edule HOM05D000121 ORTHO05D000102 1.0e-08 63.2 72 51.4
Aa31LG1G20720 Aethionema arabicum HOM05D000121 ORTHO05D000102 1.7e-08 62.4 72 54.2
CAN.G496.3 Capsicum annuum HOM05D000121 ORTHO05D000102 1.7e-08 62.4 72 52.8
Lalb_Chr06g0170751 Lupinus albus HOM05D000121 ORTHO05D000102 2.3e-08 62.0 72 55.6
Potri.014G193400 Populus trichocarpa HOM05D000121 ORTHO05D000102 2.3e-08 62.0 72 54.2
PGSC0003DMG400008576 Solanum tuberosum HOM05D000121 ORTHO05D000102 2.3e-08 62.0 72 52.8
Actinidia30119 Actinidia chinensis HOM05D000121 ORTHO05D000102 3.9e-08 61.2 72 54.2
Glyma.19G169000 Glycine max HOM05D000121 ORTHO05D000102 3.9e-08 61.2 72 54.2
Gorai.007G150300 Gossypium raimondii HOM05D000121 ORTHO05D000102 3.9e-08 61.2 72 52.8
Solyc09g064440.4 Solanum lycopersicum HOM05D000121 ORTHO05D000102 3.9e-08 61.2 72 51.4
DCAR_012594 Daucus carota HOM05D000121 ORTHO05D000102 5.1e-08 60.8 72 54.2
Gohir.A11G134000 Gossypium hirsutum HOM05D000121 ORTHO05D000102 5.1e-08 60.8 72 52.8
Cpa.g.sc87.40 Carica papaya HOM05D000121 ORTHO05D000102 6.6e-08 60.5 72 52.8
Gohir.D11G140100 Gossypium hirsutum HOM05D000121 ORTHO05D000102 6.6e-08 60.5 72 52.8
CsaV3_6G007310 Cucumis sativus L. HOM05D000121 ORTHO05D000102 8.7e-08 60.1 75 52.0
Lj1A75T46 Lonicera japonica HOM05D000121 ORTHO05D000102 8.7e-08 60.1 72 56.9
TAR636G1549 Trochodendron aralioides HOM05D000121 ORTHO05D000102 1.1e-07 59.7 72 54.2
Aqoxy5G00120 Aquilegia oxysepala HOM05D000121 ORTHO05D000102 1.5e-07 59.3 72 52.8
AT1G04120 Arabidopsis thaliana HOM05D000121 ORTHO05D000102 2.5e-07 58.5 73 54.8
arahy.Tifrunner.gnm1.ann1.6EDB07 Arachis hypogaea HOM05D000121 ORTHO05D000102 2.5e-07 58.5 72 48.6
arahy.Tifrunner.gnm1.ann1.XSQK7Q Arachis hypogaea HOM05D000121 ORTHO05D000102 2.5e-07 58.5 72 48.6
Sopen09g025580 Solanum pennellii HOM05D000121 ORTHO05D000102 2.5e-07 58.5 72 51.4
Nitab4.5_0002435g0050 Nicotiana tabacum HOM05D000121 ORTHO05D000102 3.3e-07 58.2 72 51.4
Phvul.007G153800 Phaseolus vulgaris HOM05D000121 ORTHO05D000102 3.3e-07 58.2 72 54.2
Lalb_Chr02g0152771 Lupinus albus HOM05D000121 ORTHO05D000102 4.3e-07 57.8 72 54.2
Oeu052086.1 Olea europaea HOM05D000121 ORTHO05D000102 4.3e-07 57.8 72 51.4
Sp1g02940 Schrenkiella parvula HOM05D000121 ORTHO05D000102 4.3e-07 57.8 73 53.4
AL1G13720 Arabidopsis lyrata HOM05D000121 ORTHO05D000102 7.3e-07 57.0 73 54.8
Ca_09643_v3 Cicer arietinum L. HOM05D000121 ORTHO05D000102 7.3e-07 57.0 72 52.8
Thhalv10006549m.g Eutrema salsugineum HOM05D000121 ORTHO05D000102 7.3e-07 57.0 73 53.4
PSO764G0025 Papaver somniferum HOM05D000121 ORTHO05D000102 7.3e-07 57.0 72 51.4
DCAR_018525 Daucus carota HOM05D000121 ORTHO05D000102 9.6e-07 56.6 72 51.4
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 9.6e-07 56.6 72 50.0
SalBow4G0617 Salvia bowleyana HOM05D000121 ORTHO05D000102 9.6e-07 56.6 72 51.4
Glyma.13G127500 Glycine max HOM05D000121 ORTHO05D000102 2.1e-06 55.5 72 51.4
Thecc.01G249100 Theobroma cacao HOM05D000121 ORTHO05D000102 2.1e-06 55.5 72 51.4
CSS0029302 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 3.6e-06 54.7 72 50.0
CSS0040468 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 3.6e-06 54.7 72 50.0
QL09p041923 Quercus lobata HOM05D000121 ORTHO05D000102 8.1e-06 53.5 72 51.4
QL09p042024 Quercus lobata HOM05D000121 ORTHO05D000102 8.1e-06 53.5 72 51.4
THA.LOC104801121 Tarenaya hassleriana HOM05D000121 ORTHO05D000102 8.1e-06 53.5 73 50.7
VMungo0720G1428 Vigna mungo HOM05D000121 ORTHO05D000102 8.1e-06 53.5 72 52.8


User provided reference genes

Program Settings