Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0281791 Rosa chinensis HOM05D005998 ORTHO05D007664 1.5e-148 530.0 379 100.0
FvH4_2g17281 Fragaria vesca HOM05D005998 ORTHO05D007664 7.4e-116 421.4 376 85.9
Prupe.8G184400 Prunus persica HOM05D005998 ORTHO05D007664 4.6e-110 402.1 373 80.4
MD05G1151800 Malus domestica HOM05D005998 ORTHO05D007664 3.9e-101 372.5 378 76.5
Atru.chr6.3489 Acer truncatum HOM05D005998 ORTHO05D007664 7.4e-92 341.7 374 73.0
Lj2A1109T75 Lonicera japonica HOM05D005998 ORTHO05D007664 1.7e-88 330.5 373 55.5
Ciclev10015543m.g Citrus clementina HOM05D005998 ORTHO05D007664 1.6e-86 323.9 375 72.3
TWI75G0247 Tripterygium wilfordii HOM05D005998 ORTHO05D007664 3.0e-85 319.7 374 65.0
AT3G07550 Arabidopsis thaliana HOM05D005998 ORTHO05D007664 4.8e-83 312.4 374 67.1
Manes.13G057500 Manihot esculenta HOM05D005998 ORTHO05D007664 7.0e-82 308.5 373 72.4
CANSAT25G0419 Cannabis sativa HOM05D005998 ORTHO05D007664 1.6e-81 307.4 368 66.3
Thhalv10020882m.g Eutrema salsugineum HOM05D005998 ORTHO05D007664 2.6e-81 306.6 374 65.5
BraA05t22797Z Brassica rapa HOM05D005998 ORTHO05D007664 4.5e-81 305.8 375 58.7
Sp3g06470 Schrenkiella parvula HOM05D005998 ORTHO05D007664 4.5e-81 305.8 374 65.2
Thecc.01G205300 Theobroma cacao HOM05D005998 ORTHO05D007664 5.9e-81 305.4 374 67.9
COL.COLO4_29925 Corchorus olitorius HOM05D005998 ORTHO05D007664 5.0e-80 302.4 374 66.0
QL09p045684 Quercus lobata HOM05D005998 ORTHO05D007664 6.5e-80 302.0 374 67.1
AL3G18890 Arabidopsis lyrata HOM05D005998 ORTHO05D007664 8.5e-80 301.6 374 66.0
PGR083G1807 Punica granatum HOM05D005998 ORTHO05D007664 1.1e-79 301.2 375 65.6
BolC5t34631H Brassica oleracea HOM05D005998 ORTHO05D007664 1.6e-78 297.4 376 67.3
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 2.1e-78 297.0 376 66.8
C05p59770 Brassica napus HOM05D005998 ORTHO05D007664 1.4e-77 294.3 376 66.5
THA.LOC104819025 Tarenaya hassleriana HOM05D005998 ORTHO05D007664 1.2e-76 291.2 376 64.6
TAR362G0769 Trochodendron aralioides HOM05D005998 ORTHO05D007664 1.2e-76 291.2 372 70.4
Gohir.D11G153100 Gossypium hirsutum HOM05D005998 ORTHO05D007664 5.7e-76 288.9 374 65.5
Gorai.007G162000 Gossypium raimondii HOM05D005998 ORTHO05D007664 5.7e-76 288.9 374 65.5
Gohir.A11G144800 Gossypium hirsutum HOM05D005998 ORTHO05D007664 4.8e-75 285.8 374 65.5
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 6.3e-75 285.4 287 57.8
A05p40660 Brassica napus HOM05D005998 ORTHO05D007664 1.1e-74 284.6 375 57.1
BcaC05g29548 Brassica carinata HOM05D005998 ORTHO05D007664 1.8e-74 283.9 284 60.6
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.1e-74 281.6 372 41.7
BcaC05g29549 Brassica carinata HOM05D005998 ORTHO05D007664 1.2e-73 281.2 287 64.1
Carub.0003s0710 Capsella rubella HOM05D005998 ORTHO05D007664 1.0e-72 278.1 372 62.9
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 3.8e-72 276.2 287 57.8
PSO017G2023 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-71 274.6 287 63.4
CSS0043446 Camellia sinensis var. sinensis HOM05D005998 ORTHO05D007664 7.2e-71 271.9 354 65.8
Potri.017G056400 Populus trichocarpa HOM05D005998 ORTHO05D007664 1.2e-68 264.6 373 67.0
Aa31LG5G18090 Aethionema arabicum HOM05D005998 ORTHO05D007664 9.8e-68 261.5 283 59.7
Cc02_g30680 Coffea canephora HOM05D005998 ORTHO05D007664 9.8e-68 261.5 374 55.6
Eucgr.H00683 Eucalyptus grandis HOM05D005998 ORTHO05D007664 6.3e-67 258.8 287 62.0
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 8.3e-67 258.5 373 46.4
RcHm_v2.0_Chr5g0064201 Rosa chinensis HOM05D005998 ORTHO05D007664 3.1e-66 256.5 262 67.2
Cpa.g.sc8.24 Carica papaya HOM05D005998 ORTHO05D007664 4.1e-66 256.1 371 56.1
CARHR082230 Cardamine hirsuta HOM05D005998 ORTHO05D007664 1.2e-65 254.6 374 59.6
EL10Ac5g10571 Beta vulgaris HOM05D005998 ORTHO05D007664 1.6e-65 254.2 280 52.1
Sabra17G0050000 Salix brachista HOM05D005998 ORTHO05D007664 2.3e-64 250.4 373 67.0
PGSC0003DMG400020641 Solanum tuberosum HOM05D005998 ORTHO05D007664 2.1e-62 243.8 372 56.5
Peaxi162Scf00372g00061 Petunia axillaris HOM05D005998 ORTHO05D007664 2.0e-60 237.3 372 54.6
Duzib211G0440 Durio zibethinus HOM05D005998 ORTHO05D007664 4.4e-60 236.1 306 74.5
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 7.5e-60 235.3 375 44.5
Sabra17G0048300 Salix brachista HOM05D005998 ORTHO05D007664 7.5e-60 235.3 355 68.2
Nitab4.5_0003952g0080 Nicotiana tabacum HOM05D005998 ORTHO05D007664 1.3e-59 234.6 372 55.9
Hma1.2p1_1756F.1_g301020 Hydrangea macrophylla HOM05D005998 ORTHO05D007664 2.2e-59 233.8 373 44.8
Solyc06g007680.1 Solanum lycopersicum HOM05D005998 ORTHO05D007664 2.8e-59 233.4 372 55.6
Nitab4.5_0002641g0010 Nicotiana tabacum HOM05D005998 ORTHO05D007664 9.2e-58 228.4 372 55.1
Lsat_1_v5_gn_8_98580 Lactuca sativa HOM05D005998 ORTHO05D007664 1.2e-57 228.0 372 47.8
Sopen06g002580 Solanum pennellii HOM05D005998 ORTHO05D007664 1.6e-57 227.6 372 54.0
CAN.G181.48 Capsicum annuum HOM05D005998 ORTHO05D007664 2.3e-56 223.8 372 44.1
Haze_03601 Corylus avellana HOM05D005998 ORTHO05D007664 1.6e-54 217.6 384 45.3
PSO573G0042 Papaver somniferum HOM05D005998 ORTHO05D007664 6.1e-54 215.7 288 53.1
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 5.2e-53 212.6 249 64.7
AUR62008051 Chenopodium quinoa HOM05D005998 ORTHO05D007664 6.8e-53 212.2 399 55.9
PSO573G0007 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-50 204.9 312 54.2
Lj3g0009731 Lotus japonicus HOM05D005998 ORTHO05D007664 7.0e-50 202.2 375 61.6
PSO017G6055 Papaver somniferum HOM05D005998 ORTHO05D007664 1.2e-49 201.4 312 54.2
RcHm_v2.0_Chr7g0205731 Rosa chinensis HOM05D005998 ORTHO05D007664 1.6e-49 201.1 206 64.6
AUR62028626 Chenopodium quinoa HOM05D005998 ORTHO05D007664 2.0e-49 200.7 316 49.1
Medtr8g028140 Medicago truncatula HOM05D005998 ORTHO05D007664 2.7e-49 200.3 371 63.3
Glyma.07G060100 Glycine max HOM05D005998 ORTHO05D007664 2.3e-48 197.2 375 62.4
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 1.9e-47 194.1 276 53.3
Lsat_1_v5_gn_4_46380 Lactuca sativa HOM05D005998 ORTHO05D007664 2.8e-46 190.3 289 54.0
HanXRQChr08g0231291 Helianthus annuus HOM05D005998 ORTHO05D007664 4.0e-45 186.4 287 48.8
HanXRQChr08g0231301 Helianthus annuus HOM05D005998 ORTHO05D007664 4.0e-45 186.4 287 48.8
HPP92_024394 Vanilla planifolia HOM05D005998 ORTHO05D007664 4.0e-45 186.4 292 53.1
TPR.G5126 Trifolium pratense HOM05D005998 ORTHO05D007664 1.5e-44 184.5 373 60.9
Psat4g158400 Pisum sativum HOM05D005998 ORTHO05D007664 9.8e-44 181.8 371 60.4
MD10G1146000 Malus domestica HOM05D005998 ORTHO05D007664 1.3e-43 181.4 283 58.0
Ca_23566_v3 Cicer arietinum L. HOM05D005998 ORTHO05D007664 1.7e-43 181.0 376 59.8
SEGI_17775 Sequoiadendron giganteum HOM05D005998 ORTHO05D007664 1.9e-42 177.6 288 45.1
HanXRQChr08g0231281 Helianthus annuus HOM05D005998 ORTHO05D007664 5.4e-42 176.0 287 47.7
PSO017G3521 Papaver somniferum HOM05D005998 ORTHO05D007664 1.9e-39 167.5 295 46.4
Os11g0264200 Oryza sativa ssp. japonica HOM05D005998 ORTHO05D007664 2.3e-37 160.6 286 49.3
Dinv28780 Davidia involucrata HOM05D005998 ORTHO05D003775 5.8e-36 156.0 181 69.6
Zm00001eb112540 Zea mays HOM05D005998 ORTHO05D007664 6.4e-35 152.5 289 48.1
ECA247G3308 Erigeron canadensis HOM05D005998 ORTHO05D007664 5.4e-34 149.4 286 44.4
DCAR_000509 Daucus carota HOM05D005998 ORTHO05D007664 7.8e-33 145.6 241 65.1
ECA247G2512 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.5e-31 138.7 301 34.2
PSO675G7594 Papaver somniferum HOM05D005998 ORTHO05D007664 6.2e-30 136.0 288 42.7
ATR0743G036 Amborella trichopoda HOM05D005998 ORTHO05D007664 8.1e-30 135.6 273 45.1
ECA247G1983 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.2e-28 131.7 308 33.4
PSO017G0196 Papaver somniferum HOM05D005998 ORTHO05D007664 4.6e-25 119.8 281 39.1
Duzib138G0171 Durio zibethinus HOM05D005998 ORTHO05D007664 3.0e-24 117.1 89 61.8
Rhsim13G0055600 Rhododendron simsii HOM05D005998 ORTHO05D007664 3.0e-24 117.1 287 30.7
CDE08G0319 Ceratophyllum demersum HOM05D005998 ORTHO05D007664 1.9e-23 114.4 169 50.9
ECA232G4734 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.1e-22 110.9 286 38.5
Mapoly0166s0007 Marchantia polymorpha HOM05D005998 ORTHO05D007664 8.1e-22 109.0 283 40.3
PSO541G3130 Papaver somniferum HOM05D005998 ORTHO05D007664 3.1e-21 107.1 293 39.9
PSO017G5443 Papaver somniferum HOM05D005998 ORTHO05D007664 5.3e-21 106.3 253 43.5
PSO675G8174 Papaver somniferum HOM05D005998 ORTHO05D007664 2.0e-20 104.4 282 40.1
Zm00001eb182340 Zea mays HOM05D005998 ORTHO05D015715 2.6e-20 104.0 92 56.5
PSO218G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 4.4e-20 103.2 283 39.9
PSO340G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 4.4e-20 103.2 283 39.9
PSO675G6053 Papaver somniferum HOM05D005998 ORTHO05D007664 4.4e-20 103.2 283 39.9
PSO675G6885 Papaver somniferum HOM05D005998 ORTHO05D007664 4.4e-20 103.2 283 39.9
Zm00001eb048880 Zea mays HOM05D005998 ORTHO05D015715 2.2e-19 100.9 92 56.5
ECA247G3549 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.9e-18 97.8 287 43.6
Oeu064702.2 Olea europaea HOM05D005998 ORTHO05D007664 1.9e-18 97.8 70 67.1
PSO837G0060 Papaver somniferum HOM05D005998 ORTHO05D007664 4.2e-18 96.7 283 38.2
ECA247G2923 Erigeron canadensis HOM05D005998 ORTHO05D003386 3.5e-17 93.6 274 44.2
PSO017G6716 Papaver somniferum HOM05D005998 ORTHO05D007664 4.6e-17 93.2 265 38.9
PSO017G2859 Papaver somniferum HOM05D005998 ORTHO05D007664 9.6e-15 85.5 231 45.0
PSO017G7250 Papaver somniferum HOM05D005998 ORTHO05D007664 9.6e-15 85.5 242 41.3
PSO837G0015 Papaver somniferum HOM05D005998 ORTHO05D007664 6.2e-14 82.8 297 36.4
ECA247G1593 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.2e-12 78.6 239 28.5
PSO017G6639 Papaver somniferum HOM05D005998 ORTHO05D007664 1.5e-12 78.2 266 35.0
PSO017G4719 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-11 75.1 166 34.3
PSO675G5104 Papaver somniferum HOM05D005998 ORTHO05D007664 6.4e-11 72.8 208 40.9
PSO017G0268 Papaver somniferum HOM05D005998 ORTHO05D007664 5.4e-10 69.7 167 31.7
Migut.I00727 Erythranthe guttata HOM05D001993 ORTHO05D009037 3.5e-09 67.0 157 31.8
PSO017G7319 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-08 65.1 92 38.0
Cpa.g.sc48.114 Carica papaya HOM05D002125 ORTHO05D002105 1.8e-08 64.7 141 33.3
PSO541G0922 Papaver somniferum HOM05D005998 ORTHO05D007664 3.0e-08 63.9 182 40.7
PSO573G0016 Papaver somniferum HOM05D005998 ORTHO05D007664 3.0e-08 63.9 202 35.1
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 3.9e-08 63.5 199 28.6
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 8.7e-08 62.4 195 29.2
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 8.7e-08 62.4 191 26.7
PSO017G3446 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-07 62.0 229 26.6
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 5.6e-07 59.7 157 31.2
ECA247G1907 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.6e-07 58.9 90 38.9
Nitab4.5_0005460g0010 Nicotiana tabacum HOM05D001993 ORTHO05D009037 9.6e-07 58.9 157 31.8
Peaxi162Scf00108g00131 Petunia axillaris HOM05D001993 ORTHO05D009037 9.6e-07 58.9 156 30.8
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 9.6e-07 58.9 193 27.5
Oeu010088.1 Olea europaea HOM05D001993 ORTHO05D009037 1.3e-06 58.5 157 29.3
SalBow7G0151 Salvia bowleyana HOM05D001993 ORTHO05D009037 1.3e-06 58.5 157 29.3
MSTRG.22779 Avicennia marina HOM05D001993 ORTHO05D009037 1.6e-06 58.2 157 30.6
Lj6g0020038 Lotus japonicus HOM05D002762 ORTHO05D004643 1.6e-06 58.2 199 26.6
SMO137G0150 Selaginella moellendorffii HOM05D001993 ORTHO05D009037 1.6e-06 58.2 140 32.1
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 2.1e-06 57.8 191 33.0
Aqoxy7G03544 Aquilegia oxysepala HOM05D001993 ORTHO05D009037 2.8e-06 57.4 185 29.2
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 2.8e-06 57.4 197 27.4
unitig_0.g1110 Utricularia gibba HOM05D001993 ORTHO05D009037 3.7e-06 57.0 157 29.9
Dinv30840 Davidia involucrata HOM05D002125 ORTHO05D002105 4.8e-06 56.6 143 27.3
Lalb_Chr14g0373981 Lupinus albus HOM05D001993 ORTHO05D009037 4.8e-06 56.6 157 29.9
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 4.8e-06 56.6 197 30.5
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 6.2e-06 56.2 196 25.5
Ah.01g006660 Amaranthus hybridus HOM05D001993 ORTHO05D009037 6.2e-06 56.2 156 28.8
SalBow6G3135 Salvia bowleyana HOM05D001993 ORTHO05D009037 6.2e-06 56.2 157 29.3
GSVIVG01017521001 Vitis vinifera HOM05D001993 ORTHO05D009037 6.2e-06 56.2 156 30.8
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 8.1e-06 55.8 194 26.3


User provided reference genes

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