Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 1.0e-35 153.3 102 100.0
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.3e-35 152.9 101 100.0
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.3e-35 152.9 101 100.0
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.3e-35 152.9 101 100.0
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 1.3e-35 152.9 101 100.0
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 1.7e-35 152.5 101 99.0
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 3.8e-35 151.4 101 99.0
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 3.8e-35 151.4 101 99.0
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 3.8e-35 151.4 101 99.0
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 3.8e-35 151.4 101 99.0
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 3.8e-35 151.4 101 99.0
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 8.5e-35 150.2 101 98.0
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 8.5e-35 150.2 101 98.0
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 8.5e-35 150.2 101 98.0
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 8.5e-35 150.2 101 98.0
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 8.5e-35 150.2 101 98.0
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 1.1e-34 149.8 101 98.0
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 1.5e-34 149.4 101 98.0
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 1.5e-34 149.4 101 97.0
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 1.5e-34 149.4 101 97.0
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 1.9e-34 149.1 101 97.0
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 1.9e-34 149.1 101 97.0
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.9e-34 149.1 101 97.0
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 1.9e-34 149.1 101 97.0
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 4.2e-34 147.9 101 96.0
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 4.2e-34 147.9 101 96.0
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 4.2e-34 147.9 101 96.0
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 4.2e-34 147.9 101 96.0
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 5.5e-34 147.5 101 91.1
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 9.4e-34 146.7 101 97.0
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 9.4e-34 146.7 101 97.0
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 9.4e-34 146.7 101 97.0
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 9.4e-34 146.7 101 94.1
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 9.4e-34 146.7 101 95.0
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.2e-33 146.4 101 96.0
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.2e-33 146.4 101 95.0
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 1.2e-33 146.4 101 95.0
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 1.2e-33 146.4 101 91.1
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 1.2e-33 146.4 101 91.1
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 1.2e-33 146.4 101 91.1
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 1.2e-33 146.4 101 91.1
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 1.6e-33 146.0 101 95.0
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 1.6e-33 146.0 101 95.0
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 2.1e-33 145.6 101 96.0
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 2.1e-33 145.6 101 96.0
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 2.1e-33 145.6 101 91.1
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 2.1e-33 145.6 101 87.1
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 2.1e-33 145.6 101 95.0
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.7e-33 145.2 101 94.1
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 2.7e-33 145.2 101 91.1
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 3.6e-33 144.8 101 94.1
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 8.0e-33 143.7 101 92.1
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 1.0e-32 143.3 101 85.1
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 1.0e-32 143.3 101 93.1
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 1.0e-32 143.3 101 94.1
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 1.4e-32 142.9 101 93.1
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 1.4e-32 142.9 101 93.1
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 2.3e-32 142.1 101 95.0
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 3.0e-32 141.7 101 93.1
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 8.8e-32 140.2 101 93.1
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 8.8e-32 140.2 102 94.1
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 1.2e-31 139.8 101 94.1
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 1.2e-31 139.8 101 94.1
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 1.2e-31 139.8 101 94.1
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 1.2e-31 139.8 101 94.1
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 1.2e-31 139.8 101 94.1
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.2e-31 139.8 101 94.1
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 1.5e-31 139.4 101 93.1
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 1.5e-31 139.4 101 93.1
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.5e-31 139.4 101 92.1
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 2.0e-31 139.0 101 93.1
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 2.6e-31 138.7 101 92.1
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 2.6e-31 138.7 101 92.1
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 5.7e-31 137.5 101 90.1
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 7.5e-31 137.1 101 92.1
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 7.5e-31 137.1 101 84.2
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 1.3e-30 136.3 101 92.1
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.3e-30 136.3 101 92.1
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 1.3e-30 136.3 101 92.1
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 1.3e-30 136.3 101 92.1
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 1.3e-30 136.3 101 92.1
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 1.3e-30 136.3 101 92.1
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 2.2e-30 135.6 101 92.1
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 2.2e-30 135.6 101 92.1
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.8e-30 135.2 101 89.1
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 2.8e-30 135.2 101 91.1
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 4.8e-30 134.4 101 91.1
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 4.8e-30 134.4 101 89.1
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 1.1e-29 133.3 101 91.1
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 1.1e-29 133.3 101 90.1
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.4e-29 132.9 101 73.3
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 1.8e-29 132.5 101 90.1
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 2.4e-29 132.1 99 90.9
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 4.1e-29 131.3 101 88.1
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 4.1e-29 131.3 101 88.1
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 1.2e-28 129.8 140 59.3
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 4.5e-28 127.9 101 86.1
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 9.5e-26 120.2 101 84.2
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.6e-25 119.4 99 74.7
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 6.1e-25 117.5 92 80.4
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.8e-24 115.9 101 78.2
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.8e-24 115.9 101 78.2
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.8e-24 115.9 92 83.7
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.1e-21 106.7 99 65.7
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 1.4e-21 106.3 59 98.3
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 1.8e-21 105.9 58 100.0
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 1.8e-21 105.9 59 98.3
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 2.4e-21 105.5 101 68.3
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 9.2e-21 103.6 59 94.9
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 3.5e-20 101.7 59 94.9
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 4.5e-20 101.3 59 91.5
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 5.9e-20 100.9 59 93.2
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 7.3e-18 94.0 59 86.4
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 1.6e-17 92.8 73 91.8
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 3.6e-17 91.7 101 66.3
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 1.0e-16 90.1 73 91.8
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 1.3e-14 83.2 59 81.4
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 6.4e-14 80.9 101 63.4
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 1.1e-13 80.1 96 68.8
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 2.7e-12 75.5 102 54.9
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 3.0e-11 72.0 47 83.0
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 4.0e-08 61.6 100 41.0
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 2.0e-07 59.3 102 40.2
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 2.2e-06 55.8 27 100.0
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 4.9e-06 54.7 27 96.3
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 4.9e-06 54.7 27 96.3


User provided reference genes

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