Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0281091 Rosa chinensis HOM05D001098 ORTHO05D044896 2.2e-24 114.8 56 100.0
vmacro02343 Vaccinium macrocarpon HOM05D001098 ORTHO05D002527 1.5e-17 92.0 47 95.7
arahy.Tifrunner.gnm1.ann1.1X8DY6 Arachis hypogaea HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
FvH4_2g16930 Fragaria vesca HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
FAN15G1608 Fragaria x ananassa HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
FAN24G1038 Fragaria x ananassa HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
FAN27G2361 Fragaria x ananassa HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 4.4e-17 90.5 51 90.2
RcHm_v2.0_Chr6g0281071 Rosa chinensis HOM05D001098 ORTHO05D002527 4.4e-17 90.5 47 95.7
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 9.8e-17 89.4 47 93.6
Ciclev10028748m.g Citrus clementina HOM05D001098 ORTHO05D002527 1.3e-16 89.0 47 93.6
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 1.3e-16 89.0 47 93.6
Duzib248G0955 Durio zibethinus HOM05D001098 ORTHO05D002527 1.3e-16 89.0 47 93.6
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 1.7e-16 88.6 47 93.6
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 1.7e-16 88.6 47 93.6
Gohir.D04G152000 Gossypium hirsutum HOM05D001098 ORTHO05D002527 1.7e-16 88.6 47 93.6
Gorai.012G138800 Gossypium raimondii HOM05D001098 ORTHO05D002527 1.7e-16 88.6 47 93.6
Actinidia17990 Actinidia chinensis HOM05D001098 ORTHO05D002527 2.2e-16 88.2 47 93.6
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 2.2e-16 88.2 47 93.6
Lj9A408T81 Lonicera japonica HOM05D001098 ORTHO05D002527 2.2e-16 88.2 47 93.6
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 2.2e-16 88.2 47 93.6
Rhsim05G0044700 Rhododendron simsii HOM05D001098 ORTHO05D002527 2.2e-16 88.2 47 93.6
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
AUR62013184 Chenopodium quinoa HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
Ca_06505_v3 Cicer arietinum L. HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
Haze_01974 Corylus avellana HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
LjContig00081g0022408 Lotus japonicus HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
VMungo0647G1862 Vigna mungo HOM05D001098 ORTHO05D002527 2.9e-16 87.8 47 91.5
Atru.chr5.3569 Acer truncatum HOM05D001098 ORTHO05D002527 3.7e-16 87.4 47 91.5
Ah.01g017660 Amaranthus hybridus HOM05D001098 ORTHO05D002527 3.7e-16 87.4 47 89.4
AUR62010182 Chenopodium quinoa HOM05D001098 ORTHO05D002527 3.7e-16 87.4 47 91.5
MBI04_g31202_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 3.7e-16 87.4 46 93.5
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 3.7e-16 87.4 46 93.5
EL10Ac9g21546 Beta vulgaris HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
ECA233G3688 Erigeron canadensis HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
Lsat_1_v5_gn_8_120701 Lactuca sativa HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
Nn6g31647 Nelumbo nucifera HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
Hund06357 Selenicereus undatus HOM05D001098 ORTHO05D002527 4.9e-16 87.0 47 91.5
Actinidia20579 Actinidia chinensis HOM05D001098 ORTHO05D002527 6.4e-16 86.7 47 91.5
DCAR_006385 Daucus carota HOM05D001098 ORTHO05D002527 6.4e-16 86.7 47 91.5
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 6.4e-16 86.7 47 91.5
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 6.4e-16 86.7 47 91.5
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 6.4e-16 86.7 47 91.5
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 6.4e-16 86.7 47 91.5
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 6.4e-16 86.7 47 89.4
Cpa.g.sc1440.1 Carica papaya HOM05D001098 ORTHO05D002527 8.3e-16 86.3 47 91.5
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 8.3e-16 86.3 47 91.5
PGR142G3259 Punica granatum HOM05D001098 ORTHO05D002527 8.3e-16 86.3 47 91.5
Gohir.A13G064400 Gossypium hirsutum HOM05D001098 ORTHO05D002527 1.1e-15 85.9 47 91.5
MBI01_g17242_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 1.1e-15 85.9 47 91.5
Sc08g0002100 Simmondsia chinensis HOM05D001098 ORTHO05D002527 1.1e-15 85.9 47 89.4
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 1.1e-15 85.9 47 89.4
Prupe.8G181000 Prunus persica HOM05D001098 ORTHO05D002527 1.4e-15 85.5 47 91.5
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 1.4e-15 85.5 47 89.4
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 1.4e-15 85.5 47 91.5
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 1.4e-15 85.5 47 91.5
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 1.4e-15 85.5 47 91.5
TAR381G1518 Trochodendron aralioides HOM05D001098 ORTHO05D002527 1.4e-15 85.5 47 91.5
Aa31sc18G70 Aethionema arabicum HOM05D001098 ORTHO05D002527 1.9e-15 85.1 47 91.5
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 1.9e-15 85.1 47 89.4
Migut.B00005 Erythranthe guttata HOM05D001098 ORTHO05D002527 2.4e-15 84.7 47 89.4
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 2.4e-15 84.7 47 87.2
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 3.2e-15 84.3 47 89.4
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 3.2e-15 84.3 47 89.4
SalBow1G7648 Salvia bowleyana HOM05D001098 ORTHO05D002527 3.2e-15 84.3 47 89.4
SalBow7G2674 Salvia bowleyana HOM05D001098 ORTHO05D002527 3.2e-15 84.3 47 89.4
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 4.1e-15 84.0 47 89.4
Eucgr.I01538 Eucalyptus grandis HOM05D001098 ORTHO05D002527 4.1e-15 84.0 47 89.4
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 4.1e-15 84.0 47 87.2
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 4.1e-15 84.0 47 87.2
Rhsim11G0198300 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.1e-15 84.0 46 89.1
AL7G15820 Arabidopsis lyrata HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BcaB03g12410 Brassica carinata HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BcaC01g00493 Brassica carinata HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BcaNung02390 Brassica carinata HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BcaNung06457 Brassica carinata HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
A01p03220 Brassica napus HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
A03p63540 Brassica napus HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
A08p21890 Brassica napus HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
C03p80640 Brassica napus HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
C07p61120 Brassica napus HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BolC1t00347H Brassica oleracea HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BolC3t20307H Brassica oleracea HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BolC7t46536H Brassica oleracea HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BraA01t00307Z Brassica rapa HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BraA03t15424Z Brassica rapa HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
BraA08t34142Z Brassica rapa HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
Carub.0007s0496 Capsella rubella HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
CARHR243660 Cardamine hirsuta HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
Thhalv10025582m.g Eutrema salsugineum HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 87.2
Sp7g33130 Schrenkiella parvula HOM05D001098 ORTHO05D002527 5.4e-15 83.6 47 89.4
HPP92_015755 Vanilla planifolia HOM05D001098 ORTHO05D002527 9.2e-15 82.8 47 87.2
Hma1.2p1_0271F.1_g108730 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 1.2e-14 82.4 44 93.2
MD05G1141000 Malus domestica HOM05D001098 ORTHO05D002527 1.2e-14 82.4 47 87.2
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 1.2e-14 82.4 47 87.2
CDE10G0149 Ceratophyllum demersum HOM05D001098 ORTHO05D002527 1.6e-14 82.0 46 87.0
MD11G1242300 Malus domestica HOM05D001098 ORTHO05D002527 1.6e-14 82.0 47 87.2
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 2.0e-14 81.6 47 85.1
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 2.0e-14 81.6 47 85.1
Medtr5g099280 Medicago truncatula HOM05D001098 ORTHO05D002527 2.7e-14 81.3 47 85.1
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 3.5e-14 80.9 47 83.0
ATR0057G016 Amborella trichopoda HOM05D001098 ORTHO05D002527 4.6e-14 80.5 47 85.1
MD05G1140500 Malus domestica HOM05D001098 ORTHO05D002527 6.0e-14 80.1 47 85.1
Os07g0573700 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D002527 6.0e-14 80.1 47 83.0
PSO675G9097 Papaver somniferum HOM05D001098 ORTHO05D002527 6.0e-14 80.1 47 85.1
Nitab4.5_0001003g0090 Nicotiana tabacum HOM05D001098 ORTHO05D002527 1.0e-13 79.3 54 79.6
Nitab4.5_0009631g0030 Nicotiana tabacum HOM05D001098 ORTHO05D002527 1.0e-13 79.3 54 79.6
CAN.G321.15 Capsicum annuum HOM05D001098 ORTHO05D002527 1.3e-13 79.0 55 78.2
SEGI_11233 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 1.3e-13 79.0 47 83.0
AagrBONN_evm.TU.Sc2ySwM_368.1241 Anthoceros agrestis HOM05D001098 ORTHO05D002527 1.7e-13 78.6 49 79.6
SMO118G0063 Selaginella moellendorffii HOM05D001098 ORTHO05D002527 1.7e-13 78.6 47 80.9
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 3.9e-13 77.4 47 83.0
MELO3C030913.2 Cucumis melo HOM05D001080 ORTHO05D044896 3.9e-13 77.4 47 83.0
Zm00001eb325140 Zea mays HOM05D001098 ORTHO05D002527 5.0e-13 77.0 46 82.6
Zm00001eb412040 Zea mays HOM05D001098 ORTHO05D002527 5.0e-13 77.0 47 78.7
QL05p062370 Quercus lobata HOM05D001098 ORTHO05D002527 6.6e-13 76.6 47 78.7
Zm00001eb137090 Zea mays HOM05D001098 ORTHO05D002648 1.5e-12 75.5 46 80.4
CBR_g38158 Chara braunii HOM05D001098 ORTHO05D000301 1.9e-12 75.1 46 78.3
unitig_90.g27539 Utricularia gibba HOM05D001098 ORTHO05D002527 6.2e-11 70.1 46 76.1
Peaxi162Scf00296g01213 Petunia axillaris HOM05D001098 ORTHO05D002527 8.0e-11 69.7 47 80.9
Duzib132G1111 Durio zibethinus HOM05D001098 ORTHO05D002527 2.7e-06 54.7 47 68.1


User provided reference genes

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