Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 2.7e-211 738.4 374 100.0
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 5.1e-186 654.4 375 89.3
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.7e-181 639.4 362 89.5
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.6e-179 632.9 364 88.5
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 2.9e-157 558.9 372 76.9
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 4.2e-156 555.1 372 75.3
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 1.1e-153 547.0 375 74.7
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 6.5e-141 504.6 372 69.9
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 6.6e-125 451.4 380 62.4
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 2.2e-120 436.4 326 66.6
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 1.9e-119 433.3 382 60.2
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 7.0e-119 431.4 378 62.4
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 9.2e-119 431.0 382 59.9
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 1.3e-117 427.2 371 59.6
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 1.7e-117 426.8 299 70.9
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 5.0e-117 425.2 381 60.9
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 1.9e-116 423.3 374 62.8
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 2.5e-116 422.9 376 60.9
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 2.1e-115 419.9 385 60.5
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 1.8e-114 416.8 383 60.6
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 9.8e-113 411.0 387 60.2
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 4.9e-112 408.7 302 67.5
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 2.4e-111 406.4 380 61.6
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 5.4e-111 405.2 292 67.1
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 9.2e-111 404.4 367 60.5
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 6.0e-110 401.7 370 57.8
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 1.3e-109 400.6 382 56.3
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 1.3e-109 400.6 379 56.7
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 3.0e-109 399.4 384 55.5
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 5.1e-109 398.7 379 57.0
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 9.5e-108 394.4 344 62.8
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 8.1e-107 391.3 357 56.6
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 1.4e-106 390.6 331 59.8
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 1.8e-106 390.2 341 58.1
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 3.1e-106 389.4 367 57.8
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 8.9e-106 387.9 318 59.4
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 1.2e-105 387.5 308 62.0
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 2.0e-105 386.7 328 61.6
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 4.4e-105 385.6 323 59.1
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 5.8e-105 385.2 295 66.4
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 1.3e-104 384.0 370 53.5
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 1.7e-104 383.6 295 66.1
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 8.3e-104 381.3 315 62.2
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 7.1e-103 378.3 275 66.9
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 2.1e-102 376.7 355 54.4
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 2.7e-102 376.3 297 64.6
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 4.6e-102 375.6 358 55.9
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 1.0e-101 374.4 287 63.1
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 1.0e-101 374.4 278 64.7
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 3.9e-101 372.5 312 60.9
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 1.1e-100 370.9 297 60.9
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 7.3e-100 368.2 309 62.1
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 2.8e-99 366.3 374 53.7
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 3.6e-99 365.9 339 56.9
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 6.2e-99 365.2 338 56.8
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 3.4e-97 359.4 294 58.2
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 5.8e-97 358.6 316 59.8
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 7.6e-97 358.2 298 60.1
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 8.4e-96 354.8 291 60.1
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 1.4e-95 354.0 355 54.1
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 1.9e-95 353.6 334 54.8
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 1.9e-95 353.6 312 56.4
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 4.2e-95 352.4 324 55.9
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 7.1e-95 351.7 306 59.2
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 2.1e-94 350.1 318 55.7
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 7.8e-94 348.2 386 51.6
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 3.0e-93 346.3 364 52.5
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 3.0e-93 346.3 353 53.0
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 3.9e-93 345.9 290 57.6
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 3.9e-93 345.9 291 58.4
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 2.5e-92 343.2 352 52.8
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 5.6e-92 342.0 371 50.1
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 5.3e-90 335.5 328 52.7
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 1.5e-89 334.0 403 49.1
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 2.0e-89 333.6 305 56.1
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 2.0e-89 333.6 306 55.6
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 9.9e-89 331.3 300 55.7
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 1.3e-88 330.9 298 56.7
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 3.8e-88 329.3 292 56.5
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.8e-88 329.3 292 56.5
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 1.4e-87 327.4 300 55.0
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 5.4e-87 325.5 224 67.4
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 1.2e-86 324.3 369 49.6
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 7.3e-84 315.1 236 64.0
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 7.3e-84 315.1 391 48.1
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 1.4e-82 310.8 275 57.5
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 2.2e-80 303.5 249 61.4
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 5.6e-76 288.9 213 63.4
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 1.7e-72 277.3 326 44.8
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 1.6e-70 270.8 372 42.2
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 2.5e-68 263.5 347 44.4
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 2.9e-56 223.4 378 37.3
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 6.5e-56 222.2 163 66.3
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 1.4e-55 221.1 324 41.0
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 7.4e-52 208.8 317 39.1
Hma1.2p1_0271F.1_g108750 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 2.2e-48 197.2 158 62.7
Hma1.2p1_1276F.1_g272150 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.1e-42 176.8 169 55.6
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 4.5e-41 172.9 305 37.0
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 9.4e-39 165.2 292 35.6
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 1.1e-34 151.8 301 33.6
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 7.7e-33 145.6 96 71.9
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 1.9e-31 141.0 211 42.2
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 1.9e-31 141.0 102 64.7
Hma1.2p1_1819F.1_g304100 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 1.9e-31 141.0 126 57.1
Hma1.2p1_0422F.1_g150110 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 9.4e-23 112.1 129 48.8
Hma1.2p1_0367F.1_g137160 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 2.7e-22 110.5 82 63.4
Cre12.g554600 Chlamydomonas reinhardtii HOM05D007297 ORTHO05D009352 1.7e-19 101.3 294 27.9
MCO13G078 Micromonas commoda HOM05D007297 ORTHO05D009352 2.9e-16 90.5 273 27.1
MCO16G326 Micromonas commoda HOM05D007297 ORTHO05D268116 1.6e-06 58.2 84 34.5


User provided reference genes

Program Settings