Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 3.0e-250 869.0 864 100.0
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 7.9e-174 615.1 870 86.7
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 3.1e-170 603.2 874 85.8
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 3.8e-144 516.5 873 80.6
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 9.8e-140 501.9 869 78.6
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 1.1e-135 488.4 875 78.9
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 1.2e-121 441.8 866 75.2
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.6e-116 424.1 868 78.0
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 4.4e-116 423.3 862 76.3
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 2.2e-115 421.0 874 71.7
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 9.2e-114 415.6 869 75.6
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 2.1e-113 414.5 871 71.3
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 7.8e-113 412.5 874 71.7
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 6.6e-112 409.5 864 69.4
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 8.6e-112 409.1 872 70.6
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 9.5e-111 405.6 869 69.9
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 8.1e-110 402.5 871 71.0
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 6.8e-109 399.4 862 71.5
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.2e-108 398.7 881 65.4
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.5e-108 398.3 872 69.5
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 4.4e-108 396.7 882 68.4
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 7.6e-108 396.0 874 73.3
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 2.1e-105 387.9 869 73.4
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 4.6e-105 386.7 866 73.8
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 9.6e-103 379.0 868 70.2
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 9.6e-103 379.0 868 70.2
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 9.6e-103 379.0 874 62.7
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 2.1e-102 377.9 862 73.9
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 2.8e-102 377.5 869 70.7
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 2.4e-101 374.4 873 71.7
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 2.9e-99 367.5 864 66.0
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 9.3e-98 362.5 870 69.4
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 2.7e-97 360.9 869 68.4
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 8.7e-96 355.9 872 70.3
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.1e-93 347.4 872 70.2
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 6.9e-93 346.3 867 66.7
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 3.4e-92 344.0 871 68.9
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 6.4e-91 339.7 872 67.0
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.4e-90 337.8 864 69.3
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.2e-90 337.4 864 69.2
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 9.3e-90 335.9 873 66.0
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.3e-88 332.0 864 68.6
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 2.3e-88 331.3 896 68.1
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 5.1e-88 330.1 864 68.9
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 3.3e-87 327.4 866 70.1
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 3.3e-87 327.4 873 67.2
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 2.8e-86 324.3 871 69.5
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 5.3e-85 320.1 871 69.5
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 2.2e-83 314.7 870 69.4
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 2.4e-82 311.2 864 67.5
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 3.2e-82 310.8 875 66.6
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.5e-81 307.4 846 64.5
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 6.0e-81 306.6 865 69.5
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 7.9e-81 306.2 870 64.7
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.0e-80 305.8 871 69.0
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.0e-80 305.8 871 68.8
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 1.0e-80 305.8 871 68.7
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.8e-80 305.1 854 65.9
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 3.0e-80 304.3 868 66.9
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 2.8e-78 297.7 870 67.7
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 4.8e-78 297.0 868 68.5
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 5.3e-77 293.5 866 68.5
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 5.8e-76 290.0 866 68.6
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 1.7e-75 288.5 438 61.6
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 9.3e-74 282.7 862 68.7
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 3.5e-73 280.8 870 63.2
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 1.3e-72 278.9 880 64.2
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.5e-71 274.6 199 68.3
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 1.3e-70 272.3 871 66.7
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 1.6e-70 271.9 867 68.6
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 2.8e-70 271.2 871 67.4
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 5.3e-69 266.9 365 73.4
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 2.6e-68 264.6 780 71.8
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.9e-66 258.5 870 65.1
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 7.2e-66 256.5 367 71.9
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 3.6e-65 254.2 871 65.9
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 3.6e-65 254.2 365 72.1
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 4.6e-65 253.8 880 65.0
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 7.9e-65 253.1 880 57.8
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.5e-63 248.8 834 68.1
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 7.4e-63 246.5 803 68.0
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 9.7e-63 246.1 859 67.1
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 1.4e-61 242.3 864 65.0
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.4e-61 242.3 834 67.7
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 4.5e-60 237.3 834 63.2
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 5.5e-58 230.3 384 65.9
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 2.0e-55 221.9 879 59.2
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.4e-53 214.9 377 63.7
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.2e-52 212.6 411 51.6
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 6.3e-46 190.3 878 61.6
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 2.0e-44 185.3 179 50.3
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 1.9e-42 178.7 742 71.6
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 9.4e-42 176.4 379 60.7
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 4.7e-41 174.1 189 47.1
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 4.7e-41 174.1 324 70.7
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 4.0e-40 171.0 251 44.6
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 1.4e-37 162.5 387 58.9
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.3e-35 156.0 381 59.3
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 5.5e-34 150.6 872 35.1
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 5.2e-32 144.1 154 48.7
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 8.8e-32 143.3 179 41.3
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 9.1e-29 133.3 262 37.0
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.5e-26 125.9 327 60.6
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 1.2e-25 122.9 393 54.7
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 4.5e-20 104.4 98 54.1
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.9e-13 82.4 112 43.8
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 6.6e-11 73.9 64 56.2
Gorai.001G138600 Gossypium raimondii HOM05D006556 ORTHO05D025699 6.2e-09 67.4 55 60.0
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 9.8e-07 60.1 71 45.1


User provided reference genes

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