Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 3.0e-122 443.4 631 100.0
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.3e-90 337.4 630 92.5
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.4e-89 333.2 667 88.2
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.2e-88 330.9 667 88.0
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.5e-86 323.2 667 87.9
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.5e-84 317.4 667 87.9
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 9.3e-47 192.6 606 32.2
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 5.6e-44 183.3 145 71.0
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.7e-40 171.8 611 30.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.4e-39 167.9 134 66.4
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.6e-38 165.2 143 63.6
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 4.6e-38 163.7 144 63.2
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.3e-37 162.2 143 62.9
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.1e-36 159.1 138 63.0
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.5e-36 158.7 629 27.0
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.9e-36 158.3 146 58.9
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.5e-36 157.9 144 59.0
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 5.6e-36 156.8 144 61.8
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 5.6e-36 156.8 629 27.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 7.4e-36 156.4 144 61.1
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.6e-35 155.2 141 63.8
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.1e-35 154.8 144 57.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.1e-35 154.8 144 57.6
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 8.1e-35 152.9 135 61.5
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-34 152.1 134 64.2
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.8e-34 151.8 150 56.7
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.8e-34 151.8 630 27.1
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.4e-34 151.4 143 61.5
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.4e-34 151.4 145 61.4
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 3.1e-34 151.0 143 60.1
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 4.0e-34 150.6 137 59.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 6.9e-34 149.8 144 59.7
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 6.9e-34 149.8 135 61.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.0e-33 148.3 134 62.7
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.5e-33 147.1 144 56.9
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.6e-33 146.4 145 60.0
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.3e-32 145.6 144 56.9
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.2e-32 144.8 135 61.5
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.9e-31 141.7 143 57.3
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.9e-31 141.7 615 25.7
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.2e-31 141.0 145 57.9
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 7.1e-31 139.8 599 26.5
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.6e-30 138.7 134 62.7
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.5e-30 137.5 142 58.5
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 6.0e-30 136.7 633 26.5
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 1.3e-29 135.6 145 52.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 2.3e-29 134.8 146 56.2
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 5.1e-29 133.7 632 25.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 2.5e-28 131.3 150 54.7
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.6e-27 128.6 152 50.0
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.1e-26 125.9 145 50.3
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.8e-25 120.2 104 63.5
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.0e-24 119.4 156 48.1
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.3e-24 119.0 105 61.0
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.9e-24 117.9 130 53.1
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 3.8e-24 117.5 133 55.6
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 5.0e-24 117.1 130 51.5
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 5.0e-24 117.1 127 52.8
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.4e-24 116.3 118 56.8
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-23 115.5 118 58.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.9e-23 115.2 118 55.1
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 9.3e-23 112.8 147 51.7
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.2e-22 112.5 148 45.3
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.5e-22 110.9 146 50.0
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 4.6e-22 110.5 137 53.3
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.3e-19 102.4 150 44.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.6e-19 102.1 115 54.8
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.8e-19 101.3 148 43.9
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 4.8e-19 100.5 115 55.7
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.8e-18 98.6 148 45.3
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.4e-18 98.2 150 45.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 4.1e-18 97.4 121 52.1
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 4.1e-18 97.4 87 58.6
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 6.9e-18 96.7 134 47.8
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.2e-17 95.9 115 52.2
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.5e-17 95.5 151 43.0
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.5e-17 95.5 86 61.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.5e-17 95.5 120 50.8
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.0e-17 95.1 91 58.2
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.6e-17 94.7 130 47.7
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.4e-17 94.4 115 51.3
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 5.9e-17 93.6 94 58.5
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.0e-16 92.8 120 51.7
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 1.3e-16 92.4 79 62.0
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.3e-16 92.4 79 62.0
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.3e-16 92.4 101 54.5
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 2.9e-16 91.3 122 43.4
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.9e-16 91.3 130 43.1
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.1e-15 89.4 80 61.2
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.4e-15 89.0 83 63.9
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 2.5e-15 88.2 69 69.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.2e-15 87.8 125 47.2
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.2e-15 87.8 68 67.6
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 4.2e-15 87.4 127 46.5
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 5.5e-15 87.0 111 49.5
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.2e-14 85.9 88 59.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.6e-14 85.5 69 66.7
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.1e-14 85.1 95 53.7
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 2.7e-14 84.7 130 46.2
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.6e-14 84.3 75 64.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 6.1e-14 83.6 131 45.0
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.1e-14 83.6 124 44.4
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.0e-13 82.8 75 62.7
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.0e-13 82.8 122 44.3
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.3e-13 81.6 130 40.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 3.0e-13 81.3 112 43.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 3.9e-13 80.9 131 44.3
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.1e-12 79.3 122 43.4
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.5e-12 79.0 75 60.0
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 2.0e-12 78.6 89 51.7
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 3.3e-12 77.8 134 42.5
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.3e-12 77.8 107 47.7
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 4.3e-12 77.4 131 43.5
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 4.3e-12 77.4 151 43.7
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.7e-12 77.0 87 47.1
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 7.4e-12 76.6 132 44.7
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 7.4e-12 76.6 82 51.2
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.8e-11 73.9 90 46.7
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 4.8e-11 73.9 115 44.3
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 6.3e-11 73.6 131 40.5
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 6.3e-11 73.6 124 42.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.3e-11 73.6 86 48.8
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 8.2e-11 73.2 64 57.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.1e-10 72.8 81 49.4
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.1e-10 72.8 68 52.9
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.4e-10 72.4 111 42.3
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.4e-10 72.4 95 44.2
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.4e-10 72.4 128 41.4
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.8e-10 72.0 66 57.6
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.1e-10 71.2 120 41.7
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 4.1e-10 70.9 133 36.8
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 5.3e-10 70.5 97 47.4
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.2e-09 69.3 66 56.1
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.5e-09 68.9 112 42.0
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.0e-09 68.6 114 41.2
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.6e-09 68.2 68 55.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.6e-09 68.2 65 55.4
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 3.4e-09 67.8 114 39.5
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 3.4e-09 67.8 116 43.1
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.0e-08 66.2 106 41.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.0e-08 66.2 130 36.9
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.7e-08 65.5 96 38.5
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 1.7e-08 65.5 88 47.7
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.9e-08 64.7 135 34.8
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.9e-08 64.7 67 50.7
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.8e-08 64.3 129 34.9
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.8e-08 64.3 92 43.5
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.8e-08 64.3 112 39.3
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.8e-08 64.3 109 41.3
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.5e-08 63.5 69 50.7
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.1e-07 62.8 138 32.6
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-07 62.8 82 48.8
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.5e-07 61.6 104 43.3
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.2e-07 61.2 76 44.7
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 4.2e-07 60.8 116 37.1
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 4.2e-07 60.8 144 36.8
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 5.5e-07 60.5 87 46.0
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.2e-07 60.1 117 41.0
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 9.4e-07 59.7 120 40.8
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-06 58.9 122 42.6
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.7e-06 58.2 74 43.2
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 6.1e-06 57.0 125 35.2
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 7.9e-06 56.6 107 36.4


User provided reference genes

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