Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0280551 Rosa chinensis HOM05D003695 ORTHO05D025748 7.0e-59 230.3 110 100.0
RcHm_v2.0_Chr7g0225341 Rosa chinensis HOM05D003695 ORTHO05D004788 1.7e-36 156.0 77 96.1
FAN04G0554 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.9e-36 154.5 110 75.5
FvH4_2g16530 Fragaria vesca HOM05D003695 ORTHO05D004788 4.1e-35 151.4 77 93.5
FAN15G0675 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.1e-35 151.4 77 93.5
FAN24G2440 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.1e-35 151.4 77 93.5
FAN08G1272 Fragaria x ananassa HOM05D003695 ORTHO05D004788 9.2e-35 150.2 77 92.2
FAN27G2019 Fragaria x ananassa HOM05D003695 ORTHO05D004788 2.1e-34 149.1 77 92.2
Ciclev10028035m.g Citrus clementina HOM05D003695 ORTHO05D004788 1.7e-33 146.0 77 84.4
CANSAT25G1589 Cannabis sativa HOM05D003695 ORTHO05D004788 2.3e-33 145.6 87 82.8
Cfa005327 Carpinus fangiana HOM05D003695 ORTHO05D004788 6.6e-33 144.1 77 84.4
CiPaw.06G118100 Carya illinoinensis HOM05D003695 ORTHO05D004788 3.3e-32 141.7 77 81.8
Migut.E00721 Erythranthe guttata HOM05D003695 ORTHO05D004788 3.3e-32 141.7 77 81.8
Prupe.8G177500 Prunus persica HOM05D003695 ORTHO05D004788 3.3e-32 141.7 79 84.8
QL02p073794 Quercus lobata HOM05D003695 ORTHO05D004788 3.3e-32 141.7 77 83.1
QL11p053951 Quercus lobata HOM05D003695 ORTHO05D004788 3.3e-32 141.7 78 84.6
Haze_02053 Corylus avellana HOM05D003695 ORTHO05D004788 4.3e-32 141.4 77 81.8
Thecc.02G045500 Theobroma cacao HOM05D003695 ORTHO05D004788 4.3e-32 141.4 79 84.8
ATR0661G017 Amborella trichopoda HOM05D003695 ORTHO05D004788 5.6e-32 141.0 79 81.0
Duzib132G1261 Durio zibethinus HOM05D003695 ORTHO05D004788 5.6e-32 141.0 79 83.5
Rhsim11G0196800 Rhododendron simsii HOM05D003695 ORTHO05D004788 5.6e-32 141.0 79 83.5
Duzib052G0095 Durio zibethinus HOM05D003695 ORTHO05D004788 7.3e-32 140.6 79 84.8
MBI05_g12019_MAGBIO Magnolia biondii HOM05D003695 ORTHO05D004788 7.3e-32 140.6 79 83.5
MD05G1133700 Malus domestica HOM05D003695 ORTHO05D004788 9.5e-32 140.2 79 82.3
GSVIVG01023951001 Vitis vinifera HOM05D003695 ORTHO05D004788 9.5e-32 140.2 85 76.5
MD10G1138700 Malus domestica HOM05D003695 ORTHO05D004788 1.2e-31 139.8 78 83.3
Manes.02G063200 Manihot esculenta HOM05D003695 ORTHO05D004788 2.8e-31 138.7 77 77.9
Manes.02G064001 Manihot esculenta HOM05D003695 ORTHO05D004788 2.8e-31 138.7 77 77.9
PGSC0003DMG400014674 Solanum tuberosum HOM05D003695 ORTHO05D004788 2.8e-31 138.7 79 82.3
CAN.G1235.1 Capsicum annuum HOM05D003695 ORTHO05D004788 3.6e-31 138.3 79 81.0
Actinidia20564 Actinidia chinensis HOM05D003695 ORTHO05D004788 4.7e-31 137.9 79 82.3
COL.COLO4_17937 Corchorus olitorius HOM05D003695 ORTHO05D004788 4.7e-31 137.9 77 84.4
Nitab4.5_0011212g0010 Nicotiana tabacum HOM05D003695 ORTHO05D004788 4.7e-31 137.9 79 82.3
vmacro21804 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 4.7e-31 137.9 79 81.0
Dinv41883 Davidia involucrata HOM05D003695 ORTHO05D004788 6.2e-31 137.5 79 81.0
Potri.004G204400 Populus trichocarpa HOM05D003695 ORTHO05D004788 6.2e-31 137.5 79 82.3
Solyc01g112150.3 Solanum lycopersicum HOM05D003695 ORTHO05D004788 6.2e-31 137.5 79 81.0
TWI31G0731 Tripterygium wilfordii HOM05D003695 ORTHO05D004788 6.2e-31 137.5 79 82.3
CSS0026215 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 8.1e-31 137.1 79 82.3
DCAR_006289 Daucus carota HOM05D003695 ORTHO05D004788 8.1e-31 137.1 77 80.5
DCAR_015668 Daucus carota HOM05D003695 ORTHO05D004788 8.1e-31 137.1 77 79.2
Hma1.2p1_0271F.1_g108980 Hydrangea macrophylla HOM05D003695 ORTHO05D004788 8.1e-31 137.1 79 79.7
Lj5A173T63 Lonicera japonica HOM05D003695 ORTHO05D004788 1.1e-30 136.7 79 81.0
PGR142G4002 Punica granatum HOM05D003695 ORTHO05D004788 1.1e-30 136.7 87 77.0
Sopen01g054200 Solanum pennellii HOM05D003695 ORTHO05D004788 1.1e-30 136.7 79 81.0
vmacro08752 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 1.1e-30 136.7 79 81.0
Actinidia18006 Actinidia chinensis HOM05D003695 ORTHO05D004788 1.8e-30 136.0 79 82.3
Dinv14161 Davidia involucrata HOM05D003695 ORTHO05D004788 1.8e-30 136.0 79 79.7
Sabra09G0129300 Salix brachista HOM05D003695 ORTHO05D004788 1.8e-30 136.0 79 79.7
CiPaw.05G088700 Carya illinoinensis HOM05D003695 ORTHO05D004788 2.3e-30 135.6 77 77.9
Nitab4.5_0000783g0140 Nicotiana tabacum HOM05D003695 ORTHO05D004788 2.3e-30 135.6 79 81.0
AUR62012932 Chenopodium quinoa HOM05D003695 ORTHO05D004788 3.1e-30 135.2 77 81.8
AUR62027130 Chenopodium quinoa HOM05D003695 ORTHO05D004788 3.1e-30 135.2 77 81.8
Peaxi162Scf00205g00012 Petunia axillaris HOM05D003695 ORTHO05D004788 3.1e-30 135.2 79 81.0
Sabra04G0138000 Salix brachista HOM05D003695 ORTHO05D004788 3.1e-30 135.2 79 81.0
SGA_v2.0_scaffold32G13340 Striga asiatica HOM05D003695 ORTHO05D004788 3.1e-30 135.2 77 83.1
TAR625G0891 Trochodendron aralioides HOM05D003695 ORTHO05D004788 3.1e-30 135.2 79 79.7
ECA232G0128 Erigeron canadensis HOM05D003695 ORTHO05D004788 4.0e-30 134.8 79 78.5
Peaxi162Scf00362g00220 Petunia axillaris HOM05D003695 ORTHO05D004788 4.0e-30 134.8 79 81.0
MSTRG.5469 Avicennia marina HOM05D003695 ORTHO05D004788 6.8e-30 134.0 79 78.5
Eucgr.G01854 Eucalyptus grandis HOM05D003695 ORTHO05D004788 6.8e-30 134.0 79 78.5
Gohir.D12G038900 Gossypium hirsutum HOM05D003695 ORTHO05D004788 8.9e-30 133.7 87 75.9
Gorai.008G040800 Gossypium raimondii HOM05D003695 ORTHO05D004788 8.9e-30 133.7 87 75.9
Nitab4.5_0003828g0040 Nicotiana tabacum HOM05D003695 ORTHO05D004788 8.9e-30 133.7 79 79.7
SalBow1G1498 Salvia bowleyana HOM05D003695 ORTHO05D004788 8.9e-30 133.7 79 79.7
Hund28543 Selenicereus undatus HOM05D003695 ORTHO05D004788 8.9e-30 133.7 77 77.9
Hund28545 Selenicereus undatus HOM05D003695 ORTHO05D004788 8.9e-30 133.7 77 77.9
Ah.11g043800 Amaranthus hybridus HOM05D003695 ORTHO05D004788 1.5e-29 132.9 79 77.2
Sed0023045 Sechium edule HOM05D003695 ORTHO05D004788 1.5e-29 132.9 79 79.7
AUR62034267 Chenopodium quinoa HOM05D003695 ORTHO05D004788 2.0e-29 132.5 77 80.5
ClCG02G010010 Citrullus lanatus HOM05D003695 ORTHO05D004788 2.0e-29 132.5 87 73.6
Gohir.A12G033600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 2.0e-29 132.5 87 75.9
HanXRQChr14g0459051 Helianthus annuus HOM05D003695 ORTHO05D004788 2.0e-29 132.5 79 75.9
Potri.009G165300 Populus trichocarpa HOM05D003695 ORTHO05D004788 2.0e-29 132.5 79 77.2
Atru.chr9.527 Acer truncatum HOM05D003695 ORTHO05D004788 3.4e-29 131.7 79 77.2
Nitab4.5_0001700g0110 Nicotiana tabacum HOM05D003695 ORTHO05D004788 3.4e-29 131.7 79 78.5
Oeu021964.1 Olea europaea HOM05D003695 ORTHO05D004788 5.8e-29 131.0 79 75.9
Oeu062472.1 Olea europaea HOM05D003695 ORTHO05D004788 7.5e-29 130.6 79 75.9
Oeu062473.1 Olea europaea HOM05D003695 ORTHO05D004788 7.5e-29 130.6 79 75.9
Atru.chr9.531 Acer truncatum HOM05D003695 ORTHO05D004788 9.9e-29 130.2 79 78.5
THA.LOC104819511 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 9.9e-29 130.2 78 78.2
EL10Ac9g21259 Beta vulgaris HOM05D003695 ORTHO05D004788 1.7e-28 129.4 77 77.9
MELO3C022592.2 Cucumis melo HOM05D003695 ORTHO05D004788 1.7e-28 129.4 87 71.3
Nn5g30948 Nelumbo nucifera HOM05D003695 ORTHO05D004788 1.7e-28 129.4 78 78.2
SEGI_21511 Sequoiadendron giganteum HOM05D003695 ORTHO05D004788 1.7e-28 129.4 78 74.4
Sc18g0005940 Simmondsia chinensis HOM05D003695 ORTHO05D004788 1.7e-28 129.4 77 76.6
Aqoxy5G01038 Aquilegia oxysepala HOM05D003695 ORTHO05D004788 2.2e-28 129.0 76 76.3
CsaV3_5G012530 Cucumis sativus L. HOM05D003695 ORTHO05D004788 2.2e-28 129.0 87 71.3
MSTRG.27620 Avicennia marina HOM05D003695 ORTHO05D004788 2.9e-28 128.6 79 77.2
CSS0016232 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 3.7e-28 128.3 79 77.2
Sed0014704 Sechium edule HOM05D003695 ORTHO05D004788 3.7e-28 128.3 87 69.0
Ah.02g124580 Amaranthus hybridus HOM05D003695 ORTHO05D004788 4.9e-28 127.9 77 75.3
Lalb_Chr07g0189201 Lupinus albus HOM05D003695 ORTHO05D004788 6.4e-28 127.5 77 77.9
VMungo0251G1743 Vigna mungo HOM05D003695 ORTHO05D004788 6.4e-28 127.5 76 78.9
Phvul.002G202700 Phaseolus vulgaris HOM05D003695 ORTHO05D004788 8.3e-28 127.1 77 76.6
arahy.Tifrunner.gnm1.ann1.50NG3N Arachis hypogaea HOM05D003695 ORTHO05D004788 1.4e-27 126.3 77 75.3
arahy.Tifrunner.gnm1.ann1.I3VYS4 Arachis hypogaea HOM05D003695 ORTHO05D004788 1.4e-27 126.3 77 75.3
arahy.Tifrunner.gnm1.ann1.Q95X63 Arachis hypogaea HOM05D003695 ORTHO05D004788 1.4e-27 126.3 77 75.3
CsaV3_7G001760 Cucumis sativus L. HOM05D003695 ORTHO05D004788 1.9e-27 125.9 79 75.9
Glyma.05G122800 Glycine max HOM05D003695 ORTHO05D004788 1.9e-27 125.9 77 75.3
THA.LOC104807186 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 1.9e-27 125.9 77 74.0
CSS0032013 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 3.2e-27 125.2 72 81.9
CDE04G2739 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 3.2e-27 125.2 79 72.2
ClCG02G003540 Citrullus lanatus HOM05D003695 ORTHO05D004788 3.2e-27 125.2 79 74.7
MELO3C013262.2 Cucumis melo HOM05D003695 ORTHO05D004788 4.1e-27 124.8 79 74.7
Medtr4g094405 Medicago truncatula HOM05D003695 ORTHO05D004788 4.1e-27 124.8 77 74.0
Ca_18316_v3 Cicer arietinum L. HOM05D003695 ORTHO05D004788 7.1e-27 124.0 77 74.0
CARHR108470 Cardamine hirsuta HOM05D003695 ORTHO05D004788 9.2e-27 123.6 77 75.3
CDE07G1944 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 9.2e-27 123.6 79 70.9
Aa31LG8G15160 Aethionema arabicum HOM05D003695 ORTHO05D004788 1.2e-26 123.2 77 75.3
Psat7g095320 Pisum sativum HOM05D003695 ORTHO05D004788 1.2e-26 123.2 77 74.0
AL6G43520 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 1.6e-26 122.9 77 75.3
Lj4g0019363 Lotus japonicus HOM05D003695 ORTHO05D004788 1.6e-26 122.9 77 74.0
Pp3c4_5220 Physcomitrium patens HOM05D003695 ORTHO05D004788 2.1e-26 122.5 78 71.8
BcaB08g34780 Brassica carinata HOM05D003695 ORTHO05D004788 3.5e-26 121.7 77 74.0
AL3G51020 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 4.6e-26 121.3 77 74.0
Glyma.08G077800 Glycine max HOM05D003695 ORTHO05D004788 4.6e-26 121.3 77 74.0
PSO170G1984 Papaver somniferum HOM05D003695 ORTHO05D004788 4.6e-26 121.3 79 70.9
Carub.0003s3212 Capsella rubella HOM05D003695 ORTHO05D004788 6.0e-26 120.9 77 74.0
Thhalv10022599m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 6.0e-26 120.9 79 72.2
FvH4_5g21350 Fragaria vesca HOM05D003695 ORTHO05D004788 6.0e-26 120.9 83 73.5
Sp3g31410 Schrenkiella parvula HOM05D003695 ORTHO05D004788 6.0e-26 120.9 77 74.0
TPR.G23776 Trifolium pratense HOM05D003695 ORTHO05D004788 6.0e-26 120.9 77 74.0
Gohir.A01G174400 Gossypium hirsutum HOM05D003695 ORTHO05D004788 7.8e-26 120.6 70 78.6
A06p33480 Brassica napus HOM05D003695 ORTHO05D004788 1.0e-25 120.2 77 72.7
C03p58880 Brassica napus HOM05D003695 ORTHO05D004788 1.3e-25 119.8 77 72.7
Lsat_1_v5_gn_9_39861 Lactuca sativa HOM05D003695 ORTHO05D004788 1.7e-25 119.4 83 69.9
AT2G17980 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 3.0e-25 118.6 77 72.7
HPP92_008376 Vanilla planifolia HOM05D003695 ORTHO05D004788 3.0e-25 118.6 77 70.1
unitig_62.g23821 Utricularia gibba HOM05D003695 ORTHO05D004788 5.1e-25 117.9 78 71.8
Zm00001eb027830 Zea mays HOM05D003695 ORTHO05D004788 6.6e-25 117.5 77 70.1
AL7G20270 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 3.3e-24 115.2 77 70.1
Lsat_1_v5_gn_1_280 Lactuca sativa HOM05D003695 ORTHO05D004788 2.1e-23 112.5 78 67.9
Os03g0620800 Oryza sativa ssp. japonica HOM05D003695 ORTHO05D004788 2.1e-23 112.5 77 67.5
Zm00001eb190510 Zea mays HOM05D003695 ORTHO05D004788 8.1e-23 110.5 79 67.1
CARHR239640 Cardamine hirsuta HOM05D003695 ORTHO05D004788 1.8e-22 109.4 86 62.8
Thhalv10003843m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 5.2e-22 107.8 86 62.8
Mapoly0007s0195 Marchantia polymorpha HOM05D003695 ORTHO05D004788 6.8e-22 107.5 78 64.1
AT4G31740 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 2.6e-21 105.5 77 64.9
BcaB03g12716 Brassica carinata HOM05D003695 ORTHO05D004788 3.4e-21 105.1 75 64.0
AagrBONN_evm.TU.Sc2ySwM_117.2597 Anthoceros agrestis HOM05D003695 ORTHO05D004788 7.6e-21 104.0 73 63.0
SHI55151 Sapria himalayana HOM05D003695 ORTHO05D004788 2.2e-20 102.4 81 61.7
SMO134G0246 Selaginella moellendorffii HOM05D003695 ORTHO05D004788 4.9e-20 101.3 77 58.4
CSS0036850 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 8.4e-20 100.5 56 83.9
CBR_g41372 Chara braunii HOM05D003695 ORTHO05D004788 8.4e-20 100.5 82 54.9
BcaB01g00720 Brassica carinata HOM05D003695 ORTHO05D004788 1.4e-19 99.8 79 65.8
BcaB07g29908 Brassica carinata HOM05D003695 ORTHO05D004788 1.4e-19 99.8 79 65.8
Lsat_1_v5_gn_3_116720 Lactuca sativa HOM05D003695 ORTHO05D025748 8.1e-15 84.0 82 57.3
Cre12.g521350 Chlamydomonas reinhardtii HOM05D003695 ORTHO05D004788 4.0e-14 81.6 78 50.0
BcaC01g01063 Brassica carinata HOM05D003695 ORTHO05D027682 5.2e-14 81.3 66 57.6
C03p87590 Brassica napus HOM05D003695 ORTHO05D027682 5.2e-14 81.3 66 57.6
BolC3t21077H Brassica oleracea HOM05D003695 ORTHO05D027682 5.2e-14 81.3 66 57.6
Cpa.g.sc20.199 Carica papaya HOM05D003695 ORTHO05D004788 1.7e-12 76.3 47 72.3
Pp3c12_11250 Physcomitrium patens HOM05D003695 ORTHO05D004788 2.2e-12 75.9 54 63.0
Gohir.D01G165600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 9.3e-11 70.5 39 84.6
Gorai.002G206000 Gossypium raimondii HOM05D003695 ORTHO05D004788 1.7e-09 66.2 39 76.9
PRCOL_00000573 Prasinoderma coloniale HOM05D003695 ORTHO05D004788 1.9e-08 62.8 71 43.7
TPR.G31636 Trifolium pratense HOM05D003695 ORTHO05D025748 1.3e-07 60.1 75 42.7


User provided reference genes

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