Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0280031 Rosa chinensis HOM05D003439 ORTHO05D004062 4.7e-35 150.6 73 100.0
RcHm_v2.0_Chr2g0159271 Rosa chinensis HOM05D003439 ORTHO05D004062 3.7e-24 114.4 60 91.7
FvH4_6g43170 Fragaria vesca HOM05D003439 ORTHO05D004062 1.4e-23 112.5 60 88.3
FAN14G2769 Fragaria x ananassa HOM05D003439 ORTHO05D004062 1.4e-23 112.5 60 88.3
Duzib248G0706 Durio zibethinus HOM05D003439 ORTHO05D004062 1.8e-23 112.1 60 88.3
FAN05G3766 Fragaria x ananassa HOM05D003439 ORTHO05D004062 1.8e-23 112.1 60 88.3
FAN09G3949 Fragaria x ananassa HOM05D003439 ORTHO05D004062 1.8e-23 112.1 60 88.3
Duzib251G0240 Durio zibethinus HOM05D003439 ORTHO05D004062 2.4e-23 111.7 60 86.7
arahy.Tifrunner.gnm1.ann1.N0VMF0 Arachis hypogaea HOM05D003439 ORTHO05D004062 3.1e-23 111.3 60 85.0
arahy.Tifrunner.gnm1.ann1.S34EA0 Arachis hypogaea HOM05D003439 ORTHO05D004062 3.1e-23 111.3 60 85.0
MD09G1109000 Malus domestica HOM05D003439 ORTHO05D004062 3.1e-23 111.3 60 88.3
MD17G1097000 Malus domestica HOM05D003439 ORTHO05D004062 3.1e-23 111.3 60 88.3
Gohir.A03G108400 Gossypium hirsutum HOM05D003439 ORTHO05D004062 7.0e-23 110.2 60 86.7
Prupe.3G217100 Prunus persica HOM05D003439 ORTHO05D004062 7.0e-23 110.2 59 88.1
Thecc.02G314800 Theobroma cacao HOM05D003439 ORTHO05D004062 7.0e-23 110.2 60 86.7
QL08p033044 Quercus lobata HOM05D003439 ORTHO05D004062 1.2e-22 109.4 60 85.0
GSVIVG01030423001 Vitis vinifera HOM05D003439 ORTHO05D004062 1.2e-22 109.4 60 85.0
COL.COLO4_27713 Corchorus olitorius HOM05D003439 ORTHO05D004062 1.6e-22 109.0 60 86.7
SalBow7G1393 Salvia bowleyana HOM05D003439 ORTHO05D004062 1.6e-22 109.0 60 86.7
TPR.G4641 Trifolium pratense HOM05D003439 ORTHO05D004062 1.6e-22 109.0 60 85.0
TWI36G1050 Tripterygium wilfordii HOM05D003439 ORTHO05D004062 1.6e-22 109.0 60 86.7
Psat7g157240 Pisum sativum HOM05D003439 ORTHO05D004062 2.0e-22 108.6 60 85.0
Gohir.D02G133600 Gossypium hirsutum HOM05D003439 ORTHO05D004062 2.7e-22 108.2 60 85.0
Gorai.005G149600 Gossypium raimondii HOM05D003439 ORTHO05D004062 2.7e-22 108.2 60 85.0
EL10Ac8g19506 Beta vulgaris HOM05D003439 ORTHO05D004062 3.5e-22 107.8 60 81.7
Cfa014399 Carpinus fangiana HOM05D003439 ORTHO05D004062 5.9e-22 107.1 60 83.3
Ciclev10014908m.g Citrus clementina HOM05D003439 ORTHO05D004062 5.9e-22 107.1 64 78.1
CANSAT64G1323 Cannabis sativa HOM05D003439 ORTHO05D004062 7.7e-22 106.7 60 80.0
Cpa.g.sc87.77 Carica papaya HOM05D003439 ORTHO05D004062 7.7e-22 106.7 60 81.7
Peaxi162Scf00389g00814 Petunia axillaris HOM05D003439 ORTHO05D004062 7.7e-22 106.7 60 85.0
BcaC02g11324 Brassica carinata HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 80.0
A05p13180 Brassica napus HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 80.0
C04p17240 Brassica napus HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 80.0
BolC4t23276H Brassica oleracea HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 80.0
CSS0041453 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 81.7
AUR62032477 Chenopodium quinoa HOM05D003439 ORTHO05D004062 1.3e-21 105.9 58 82.8
Cc05_g04590 Coffea canephora HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 81.7
Nitab4.5_0006567g0010 Nicotiana tabacum HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 83.3
Oeu041919.3 Olea europaea HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 83.3
SGA_v2.0_scaffold70G23396 Striga asiatica HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 83.3
TAR629G2369 Trochodendron aralioides HOM05D003439 ORTHO05D004062 1.3e-21 105.9 60 81.7
MSTRG.6579 Avicennia marina HOM05D003439 ORTHO05D004062 1.7e-21 105.5 60 81.7
CiPaw.03G159900 Carya illinoinensis HOM05D003439 ORTHO05D004062 1.7e-21 105.5 60 80.0
Nitab4.5_0001213g0070 Nicotiana tabacum HOM05D003439 ORTHO05D004062 1.7e-21 105.5 60 81.7
SGA_v2.0_scaffold34G13839 Striga asiatica HOM05D003439 ORTHO05D004062 1.7e-21 105.5 60 83.3
THA.LOC104816043 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 1.7e-21 105.5 60 80.0
TAR627G1083 Trochodendron aralioides HOM05D003439 ORTHO05D004062 1.7e-21 105.5 60 81.7
Atru.chr6.3185 Acer truncatum HOM05D003439 ORTHO05D004062 2.3e-21 105.1 60 81.7
Lj1C765G0 Lonicera japonica HOM05D003439 ORTHO05D004062 2.3e-21 105.1 60 81.7
Medtr4g048220 Medicago truncatula HOM05D003439 ORTHO05D004062 2.3e-21 105.1 60 81.7
Haze_12863 Corylus avellana HOM05D003439 ORTHO05D004062 2.9e-21 104.8 60 81.7
CsaV3_2G034930 Cucumis sativus L. HOM05D003439 ORTHO05D004062 2.9e-21 104.8 60 81.7
BcaB02g10470 Brassica carinata HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 78.3
CSS0047283 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 81.7
Carub.0004s1376 Capsella rubella HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 78.3
Ca_26960_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 81.7
Ca_29946_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 81.7
Lsat_1_v5_gn_9_43200 Lactuca sativa HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 81.7
Solyc12g005870.3 Solanum lycopersicum HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 81.7
Sopen12g001820 Solanum pennellii HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 81.7
VMungo1127G2094 Vigna mungo HOM05D003439 ORTHO05D004062 3.8e-21 104.4 60 80.0
MELO3C019269.2 Cucumis melo HOM05D003439 ORTHO05D004062 5.0e-21 104.0 60 81.7
Glyma.06G305800 Glycine max HOM05D003439 ORTHO05D004062 5.0e-21 104.0 60 80.0
HanXRQChr05g0144141 Helianthus annuus HOM05D003439 ORTHO05D004062 5.0e-21 104.0 60 81.7
Lj3g0022714 Lotus japonicus HOM05D003439 ORTHO05D004062 5.0e-21 104.0 59 81.4
AUR62043065 Chenopodium quinoa HOM05D003439 ORTHO05D004062 6.6e-21 103.6 58 81.0
Dinv39712 Davidia involucrata HOM05D003439 ORTHO05D004062 6.6e-21 103.6 60 81.7
Manes.12G066600 Manihot esculenta HOM05D003439 ORTHO05D004062 6.6e-21 103.6 60 78.3
PGR042G0375 Punica granatum HOM05D003439 ORTHO05D004062 6.6e-21 103.6 60 78.3
Sabra14G0116100 Salix brachista HOM05D003439 ORTHO05D004062 6.6e-21 103.6 60 80.0
Solyc11g072460.2 Solanum lycopersicum HOM05D003439 ORTHO05D004062 6.6e-21 103.6 57 86.0
Sopen11g030100 Solanum pennellii HOM05D003439 ORTHO05D004062 6.6e-21 103.6 57 86.0
PGSC0003DMG400027403 Solanum tuberosum HOM05D003439 ORTHO05D004062 6.6e-21 103.6 57 86.0
Eucgr.A01128 Eucalyptus grandis HOM05D003439 ORTHO05D004062 8.6e-21 103.2 60 80.0
BraA05t20259Z Brassica rapa HOM05D003439 ORTHO05D004062 1.1e-20 102.8 60 78.3
CAN.G80.46 Capsicum annuum HOM05D003439 ORTHO05D004062 1.1e-20 102.8 60 80.0
Sed0015779 Sechium edule HOM05D003439 ORTHO05D004062 1.1e-20 102.8 59 79.7
Sc21g0001430 Simmondsia chinensis HOM05D003439 ORTHO05D004062 1.1e-20 102.8 60 78.3
Phvul.011G103600 Phaseolus vulgaris HOM05D003439 ORTHO05D004062 1.5e-20 102.4 60 78.3
Aqoxy1G02139 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 1.9e-20 102.1 60 80.0
BraA09t42091Z Brassica rapa HOM05D003439 ORTHO05D004062 1.9e-20 102.1 60 76.7
Psat1g032320 Pisum sativum HOM05D003439 ORTHO05D004062 1.9e-20 102.1 60 81.7
Potri.002G229100 Populus trichocarpa HOM05D003439 ORTHO05D004062 1.9e-20 102.1 60 80.0
Sed0026537 Sechium edule HOM05D003439 ORTHO05D004062 1.9e-20 102.1 60 80.0
DCAR_019274 Daucus carota HOM05D003439 ORTHO05D004062 2.5e-20 101.7 57 86.0
Lalb_Chr19g0135881 Lupinus albus HOM05D003439 ORTHO05D004062 2.5e-20 101.7 58 81.0
PSO541G1862 Papaver somniferum HOM05D003439 ORTHO05D004062 2.5e-20 101.7 60 78.3
PSO675G5573 Papaver somniferum HOM05D003439 ORTHO05D004062 2.5e-20 101.7 60 78.3
A10p03710 Brassica napus HOM05D003439 ORTHO05D004062 3.3e-20 101.3 60 75.0
BraA10t42644Z Brassica rapa HOM05D003439 ORTHO05D004062 3.3e-20 101.3 60 75.0
Psat0s800g0080 Pisum sativum HOM05D003439 ORTHO05D004062 3.3e-20 101.3 58 84.5
CARHR126230 Cardamine hirsuta HOM05D003439 ORTHO05D004062 4.2e-20 100.9 60 78.3
Potri.014G153500 Populus trichocarpa HOM05D003439 ORTHO05D004062 4.2e-20 100.9 60 78.3
AL4G27800 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 5.5e-20 100.5 60 76.7
CAN.G553.19 Capsicum annuum HOM05D003439 ORTHO05D004062 5.5e-20 100.5 57 82.5
Migut.M00436 Erythranthe guttata HOM05D003439 ORTHO05D004062 5.5e-20 100.5 60 78.3
Nn1g07136 Nelumbo nucifera HOM05D003439 ORTHO05D004062 5.5e-20 100.5 60 78.3
Sabra02G0175100 Salix brachista HOM05D003439 ORTHO05D004062 5.5e-20 100.5 60 78.3
Sp1g04030 Schrenkiella parvula HOM05D003439 ORTHO05D004062 5.5e-20 100.5 60 73.3
Sp4g14780 Schrenkiella parvula HOM05D003439 ORTHO05D004062 5.5e-20 100.5 60 75.0
SpUn0024_0110 Schrenkiella parvula HOM05D003439 ORTHO05D004062 5.5e-20 100.5 60 73.3
ECA232G2998 Erigeron canadensis HOM05D003439 ORTHO05D004062 7.2e-20 100.1 60 76.7
Glyma.12G098800 Glycine max HOM05D003439 ORTHO05D004062 7.2e-20 100.1 60 75.0
BcaNung05930 Brassica carinata HOM05D003439 ORTHO05D004062 9.5e-20 99.8 60 73.3
Thhalv10007362m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 9.5e-20 99.8 60 73.3
BcaC07g42149 Brassica carinata HOM05D003439 ORTHO05D004062 1.2e-19 99.4 60 75.0
C08p51960 Brassica napus HOM05D003439 ORTHO05D004062 1.2e-19 99.4 60 75.0
Thhalv10016512m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 1.2e-19 99.4 57 80.7
THA.LOC104800990 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 1.2e-19 99.4 59 76.3
Aa31LG1G19570 Aethionema arabicum HOM05D003439 ORTHO05D004062 1.6e-19 99.0 60 73.3
Hma1.2p1_0576F.1_g182010 Hydrangea macrophylla HOM05D003439 ORTHO05D004062 1.6e-19 99.0 61 73.8
C08p01780 Brassica napus HOM05D003439 ORTHO05D004062 2.1e-19 98.6 60 73.3
BolC8t46978H Brassica oleracea HOM05D003439 ORTHO05D004062 2.1e-19 98.6 60 73.3
AT2G32410 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 2.8e-19 98.2 60 75.0
C05p03410 Brassica napus HOM05D003439 ORTHO05D004062 2.8e-19 98.2 60 71.7
BolC5t29120H Brassica oleracea HOM05D003439 ORTHO05D004062 2.8e-19 98.2 60 71.7
Carub.0001s0445 Capsella rubella HOM05D003439 ORTHO05D004062 2.8e-19 98.2 60 71.7
Aqoxy2G04140 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 3.6e-19 97.8 60 76.7
CARHR004640 Cardamine hirsuta HOM05D003439 ORTHO05D004062 3.6e-19 97.8 60 75.0
MBI02_g21885_MAGBIO Magnolia biondii HOM05D003439 ORTHO05D004062 3.6e-19 97.8 60 75.0
A08p36540 Brassica napus HOM05D003439 ORTHO05D004062 4.7e-19 97.4 60 71.7
BraA08t35555Z Brassica rapa HOM05D003439 ORTHO05D004062 4.7e-19 97.4 60 71.7
SHI10354 Sapria himalayana HOM05D003439 ORTHO05D004062 4.7e-19 97.4 58 75.9
BolC8t52726H Brassica oleracea HOM05D003439 ORTHO05D004062 1.0e-18 96.3 60 75.0
Manes.12G074303 Manihot esculenta HOM05D003439 ORTHO05D004062 1.0e-18 96.3 60 76.7
SEGI_36291 Sequoiadendron giganteum HOM05D003439 ORTHO05D004062 1.0e-18 96.3 60 73.3
BcaC07g36858 Brassica carinata HOM05D003439 ORTHO05D004062 1.4e-18 95.9 60 70.0
Os03g0820100 Oryza sativa ssp. japonica HOM05D003439 ORTHO05D004062 1.4e-18 95.9 60 71.7
AL1G14940 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 1.8e-18 95.5 60 71.7
A09p67580 Brassica napus HOM05D003439 ORTHO05D004062 1.8e-18 95.5 60 73.3
HPP92_015981 Vanilla planifolia HOM05D003439 ORTHO05D004062 2.3e-18 95.1 60 70.0
ATR0794G065 Amborella trichopoda HOM05D003439 ORTHO05D004062 5.2e-18 94.0 60 68.3
AT1G05180 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 5.2e-18 94.0 60 70.0
Zm00001eb062550 Zea mays HOM05D003439 ORTHO05D004062 1.5e-17 92.4 60 68.3
Zm00001eb211770 Zea mays HOM05D003439 ORTHO05D004062 1.5e-17 92.4 60 68.3
BolC3t21144H Brassica oleracea HOM05D003439 ORTHO05D004062 2.6e-17 91.7 60 70.0
CDE11G0886 Ceratophyllum demersum HOM05D003439 ORTHO05D004062 4.4e-17 90.9 57 73.7
ClCG02G008740 Citrullus lanatus HOM05D003439 ORTHO05D004062 7.5e-17 90.1 87 56.3
Hund02156 Selenicereus undatus HOM05D003439 ORTHO05D004062 1.7e-16 89.0 92 53.3
BcaC07g38277 Brassica carinata HOM05D003439 ORTHO05D004062 3.7e-16 87.8 52 75.0
C08p10240 Brassica napus HOM05D003439 ORTHO05D004062 3.7e-16 87.8 52 75.0
Hma1.2p1_0032F.1_g018780 Hydrangea macrophylla HOM05D003439 ORTHO05D007904 6.3e-16 87.0 58 70.7
A08p35190 Brassica napus HOM05D003439 ORTHO05D004062 1.6e-14 82.4 49 75.5
C09p70480 Brassica napus HOM05D003439 ORTHO05D004062 1.6e-14 82.4 49 75.5
BraA08t35428Z Brassica rapa HOM05D003439 ORTHO05D004062 1.6e-14 82.4 49 75.5
BolC8t51791H Brassica oleracea HOM05D003439 ORTHO05D004062 2.0e-14 82.0 57 68.4
Pp3c2_11270 Physcomitrium patens HOM05D003439 ORTHO05D004062 2.7e-14 81.6 60 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3702 Anthoceros agrestis HOM05D003439 ORTHO05D004062 3.5e-14 81.3 60 61.7
BcaC07g41226 Brassica carinata HOM05D003439 ORTHO05D004062 2.9e-13 78.2 56 66.1
CBR_g55862 Chara braunii HOM05D003439 ORTHO05D004062 2.9e-13 78.2 60 61.7
Pp3c14_7440 Physcomitrium patens HOM05D003439 ORTHO05D004062 2.9e-13 78.2 60 58.3
BolC8t48703H Brassica oleracea HOM05D003439 ORTHO05D004062 3.9e-13 77.8 52 71.2
CBR_g50442 Chara braunii HOM05D003439 ORTHO05D004062 1.9e-12 75.5 58 58.6
Mapoly0005s0094 Marchantia polymorpha HOM05D003439 ORTHO05D004062 1.9e-12 75.5 58 62.1
SMO140G0107 Selaginella moellendorffii HOM05D003439 ORTHO05D004062 3.3e-12 74.7 57 61.4
C08p42310 Brassica napus HOM05D003439 ORTHO05D004062 4.3e-12 74.3 52 69.2
PRCOL_00002650 Prasinoderma coloniale HOM05D003439 ORTHO05D004062 4.0e-10 67.8 60 50.0
Cre01.g002350 Chlamydomonas reinhardtii HOM05D003439 ORTHO05D004062 8.9e-10 66.6 69 49.3
FAN02G4351 Fragaria x ananassa HOM05D003439 ORTHO05D004062 2.0e-09 65.5 59 54.2
BraA01t03614Z Brassica rapa HOM05D003439 ORTHO05D004062 2.6e-09 65.1 52 65.4
RcHm_v2.0_Chr7g0198761 Rosa chinensis HOM05D003439 ORTHO05D004062 9.8e-09 63.2 41 65.9
CDE05G2607 Ceratophyllum demersum HOM05D003439 ORTHO05D004062 1.3e-08 62.8 77 48.1
RcHm_v2.0_Chr1g0335231 Rosa chinensis HOM05D003439 ORTHO05D004062 1.7e-08 62.4 41 65.9
RcHm_v2.0_Chr2g0118851 Rosa chinensis HOM05D003439 ORTHO05D004062 1.7e-08 62.4 41 65.9
RcHm_v2.0_Chr4g0396851 Rosa chinensis HOM05D003439 ORTHO05D004062 1.7e-08 62.4 41 65.9
RcHm_v2.0_Chr5g0011001 Rosa chinensis HOM05D003439 ORTHO05D004062 1.7e-08 62.4 41 65.9
RcHm_v2.0_Chr6g0268661 Rosa chinensis HOM05D003439 ORTHO05D004062 1.7e-08 62.4 41 65.9
RcHm_v2.0_Chr6g0277741 Rosa chinensis HOM05D003439 ORTHO05D004062 1.7e-08 62.4 41 65.9
vmacro12203 Vaccinium macrocarpon HOM05D003439 ORTHO05D004062 4.9e-08 60.8 41 78.0
RcHm_v2.0_Chr2g0126511 Rosa chinensis HOM05D003439 ORTHO05D025162 1.9e-07 58.9 41 63.4
Actinidia27265 Actinidia chinensis HOM05D003439 ORTHO05D004062 3.2e-07 58.2 59 50.8
Psat3g162480 Pisum sativum HOM05D003439 ORTHO05D004062 5.4e-07 57.4 28 85.7
Psat3g162520 Pisum sativum HOM05D003439 ORTHO05D004062 5.4e-07 57.4 28 85.7
Hma1.2p1_0257F.1_g103570 Hydrangea macrophylla HOM05D003439 ORTHO05D004062 7.0e-07 57.0 38 65.8
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 1.6e-06 55.8 32 81.2
CSS0017187 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 3.5e-06 54.7 29 79.3
MCO01G723 Micromonas commoda HOM05D003439 ORTHO05D004062 3.5e-06 54.7 69 31.9


User provided reference genes

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