Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.4e-72 276.2 143 100.0
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 2.2e-68 262.3 143 93.0
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 6.3e-44 181.0 141 65.2
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.0e-42 176.0 140 62.9
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.7e-41 172.9 123 69.1
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.3e-40 168.7 123 66.7
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 3.3e-40 168.7 135 58.5
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 4.2e-40 168.3 138 58.7
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.4e-38 163.3 146 54.1
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 3.0e-38 162.2 129 61.2
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 6.8e-38 161.0 140 57.1
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 6.8e-38 161.0 118 62.7
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 8.9e-38 160.6 137 58.4
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 3.4e-37 158.7 119 62.2
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 9.8e-37 157.1 112 70.5
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.8e-36 155.6 128 59.4
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 3.7e-36 155.2 105 67.6
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.9e-36 154.8 123 61.8
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 6.3e-36 154.5 137 56.2
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.1e-35 153.7 117 63.2
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.8e-35 152.9 123 61.0
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-35 152.1 123 61.0
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-35 152.1 123 61.0
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-35 152.1 123 61.0
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-35 152.1 123 61.0
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-35 152.1 123 61.0
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-35 152.1 123 61.0
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 3.1e-35 152.1 111 66.7
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 4.1e-35 151.8 123 61.0
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 4.1e-35 151.8 126 55.6
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 7.0e-35 151.0 121 60.3
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.6e-34 149.8 139 56.1
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.6e-34 149.8 125 58.4
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.6e-34 149.8 126 54.8
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-34 149.1 123 60.2
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-34 149.1 122 62.3
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.7e-34 149.1 121 58.7
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 3.5e-34 148.7 138 50.7
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 4.5e-34 148.3 124 60.5
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 4.5e-34 148.3 138 49.3
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 5.9e-34 147.9 121 60.3
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.0e-33 147.1 106 67.0
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.0e-33 147.1 130 56.2
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.7e-33 146.4 121 59.5
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.9e-33 145.6 108 63.9
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.9e-33 145.6 125 57.6
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.8e-33 145.2 130 57.7
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 3.8e-33 145.2 120 56.7
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 5.0e-33 144.8 123 55.3
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 5.0e-33 144.8 135 54.8
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 6.6e-33 144.4 123 61.0
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 6.6e-33 144.4 142 51.4
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.1e-32 143.7 106 62.3
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.1e-32 143.7 131 54.2
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.5e-32 142.5 116 59.5
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.3e-32 142.1 123 58.5
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 4.3e-32 141.7 108 60.2
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 4.3e-32 141.7 135 53.3
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 9.5e-32 140.6 123 58.5
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 9.5e-32 140.6 123 57.7
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 9.5e-32 140.6 139 48.9
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.1e-31 139.4 123 57.7
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.6e-31 138.7 119 59.7
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 3.6e-31 138.7 120 57.5
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 8.0e-31 137.5 119 53.8
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-30 136.7 95 69.5
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 6.8e-30 134.4 119 59.7
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 2.6e-29 132.5 118 53.4
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 3.4e-29 132.1 106 59.4
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 1.3e-28 130.2 128 53.9
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 2.4e-27 125.9 139 47.5
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 2.4e-27 125.9 139 47.5
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 7.0e-27 124.4 138 44.9
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.2e-26 123.6 116 57.8
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.0e-25 120.6 133 49.6
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 6.6e-25 117.9 125 50.4
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 8.6e-25 117.5 116 56.0
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.1e-24 117.1 134 49.3
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.9e-24 116.3 94 57.4
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 9.5e-24 114.0 88 68.2
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.1e-23 112.8 120 48.3
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 2.8e-23 112.5 106 54.7
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-22 110.5 95 56.8
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.4e-22 110.2 133 47.4
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 2.3e-22 109.4 137 47.4
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 6.8e-22 107.8 87 60.9
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.5e-21 106.7 107 48.6
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 2.6e-21 105.9 126 44.4
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.3e-20 103.6 111 47.7
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.7e-20 103.2 131 42.0
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 2.9e-20 102.4 195 32.8
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 2.9e-20 102.4 116 45.7
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 8.3e-20 100.9 106 49.1
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 1.1e-19 100.5 102 53.9
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 2.4e-19 99.4 120 45.0
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 4.1e-19 98.6 114 44.7
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 4.1e-19 98.6 106 47.2
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.1e-19 98.6 95 53.7
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 4.1e-19 98.6 119 47.1
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 9.2e-19 97.4 106 46.2
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 9.2e-19 97.4 106 46.2
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 9.2e-19 97.4 106 49.1
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.2e-18 97.1 106 49.1
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.2e-18 97.1 95 53.7
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 1.6e-18 96.7 57 78.9
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.6e-18 96.7 118 44.9
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.6e-18 96.7 117 47.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 2.7e-18 95.9 122 42.6
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 2.7e-18 95.9 124 40.3
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 3.5e-18 95.5 76 55.3
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 7.8e-18 94.4 106 45.3
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.0e-17 94.0 106 46.2
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.0e-17 94.0 125 41.6
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.9e-16 89.7 107 43.0
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 3.3e-16 89.0 137 38.7
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 4.3e-16 88.6 107 43.9
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 9.5e-16 87.4 124 45.2
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 8.1e-15 84.3 107 46.7
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 4.0e-14 82.0 94 43.6
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 5.2e-14 81.6 104 43.3
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.9e-14 80.9 58 63.8
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.6e-13 79.3 60 56.7
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.6e-13 79.3 62 59.7
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 1.7e-12 76.6 70 52.9
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 2.2e-12 76.3 121 38.0
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 6.4e-12 74.7 107 43.0
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 8.3e-12 74.3 107 39.3
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 4.1e-11 72.0 90 41.1
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 5.4e-11 71.6 60 65.0
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 7.1e-11 71.2 60 65.0
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 2.7e-10 69.3 134 30.6
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 6.6e-09 64.7 59 57.6
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 7.3e-08 61.2 45 57.8
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 2.8e-07 59.3 65 41.5
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 4.7e-07 58.5 86 40.7
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.4e-06 57.0 41 73.2
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 2.4e-06 56.2 86 39.5


User provided reference genes

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