Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0279711 Rosa chinensis HOM05D007741 ORTHO05D016318 3.7e-174 614.8 307 100.0
RcHm_v2.0_Chr4g0423141 Rosa chinensis HOM05D007741 ORTHO05D016318 5.5e-162 574.3 288 97.9
RcHm_v2.0_Chr1g0339901 Rosa chinensis HOM05D007741 ORTHO05D016318 8.0e-161 570.5 288 96.9
RcHm_v2.0_Chr2g0119361 Rosa chinensis HOM05D007741 ORTHO05D016318 1.0e-160 570.1 288 96.9
RcHm_v2.0_Chr1g0346381 Rosa chinensis HOM05D007741 ORTHO05D016318 3.8e-155 551.6 288 94.4
RcHm_v2.0_Chr7g0204591 Rosa chinensis HOM05D007741 ORTHO05D016318 1.3e-41 174.5 177 62.7
RcHm_v2.0_Chr4g0422751 Rosa chinensis HOM05D007741 ORTHO05D016318 1.1e-29 134.8 111 69.4
FAN11G0182 Fragaria x ananassa HOM05D007741 ORTHO05D016318 9.5e-29 131.7 131 58.8
FAN12G2273 Fragaria x ananassa HOM05D007741 ORTHO05D209008 3.6e-28 129.8 182 47.3
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 8.8e-27 125.2 141 51.8
RcHm_v2.0_Chr1g0358041 Rosa chinensis HOM05D007741 ORTHO05D347005 4.1e-24 116.3 166 45.8
FAN27G3337 Fragaria x ananassa HOM05D007741 ORTHO05D016314 1.6e-23 114.4 139 53.2
RcHm_v2.0_Chr5g0050261 Rosa chinensis HOM05D007741 ORTHO05D014215 4.5e-23 112.8 145 49.7
RcHm_v2.0_Chr4g0442201 Rosa chinensis HOM05D028330 ORTHO05D342349 2.3e-22 110.5 168 45.8
RcHm_v2.0_Chr1g0320181 Rosa chinensis HOM05D028330 ORTHO05D341788 2.9e-22 110.2 151 50.3
FAN10G2132 Fragaria x ananassa HOM05D007741 ORTHO05D204785 6.6e-22 109.0 140 50.7
RcHm_v2.0_Chr4g0427731 Rosa chinensis HOM05D007741 ORTHO05D006912 8.6e-22 108.6 167 43.7
FAN13G2213 Fragaria x ananassa HOM05D007741 ORTHO05D208410 1.5e-21 107.8 184 42.4
FAN22G0864 Fragaria x ananassa HOM05D007741 ORTHO05D014215 2.1e-20 104.0 116 55.2
RcHm_v2.0_Chr1g0351211 Rosa chinensis HOM05D007741 ORTHO05D015647 3.0e-19 100.1 208 38.9
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 5.2e-19 99.4 113 54.0
FAN06G3290 Fragaria x ananassa HOM05D007741 ORTHO05D203466 6.8e-19 99.0 186 40.9
FAN08G0049 Fragaria x ananassa HOM05D007741 ORTHO05D210836 2.0e-18 97.4 146 44.5
FAN15G3031 Fragaria x ananassa HOM05D007741 ORTHO05D014215 2.0e-18 97.4 114 52.6
FAN21G0226 Fragaria x ananassa HOM05D007741 ORTHO05D208582 2.6e-18 97.1 152 44.1
RcHm_v2.0_Chr1g0367541 Rosa chinensis HOM05D007741 ORTHO05D011083 2.6e-18 97.1 169 43.2
FAN22G1765 Fragaria x ananassa HOM05D007741 ORTHO05D016314 5.7e-18 95.9 82 68.3
RcHm_v2.0_Chr3g0465101 Rosa chinensis HOM05D007741 ORTHO05D342996 1.7e-17 94.4 180 40.6
FvH4_5g00140 Fragaria vesca HOM05D007761 ORTHO05D015647 2.9e-17 93.6 138 44.2
FAN18G4008 Fragaria x ananassa HOM05D007741 ORTHO05D200570 2.9e-17 93.6 128 53.9
FAN15G0259 Fragaria x ananassa HOM05D007741 ORTHO05D200480 4.9e-17 92.8 198 37.9
FAN19G1218 Fragaria x ananassa HOM05D007741 ORTHO05D035834 4.9e-17 92.8 96 51.0
FAN15G0652 Fragaria x ananassa HOM05D007741 ORTHO05D014215 6.4e-17 92.4 117 49.6
FAN23G1385 Fragaria x ananassa HOM05D015953 ORTHO05D019200 6.4e-17 92.4 116 50.9
FAN04G0311 Fragaria x ananassa HOM05D007741 ORTHO05D209742 3.2e-16 90.1 111 50.5
FAN24G0121 Fragaria x ananassa HOM05D007741 ORTHO05D208107 3.2e-16 90.1 117 53.0
RcHm_v2.0_Chr4g0422711 Rosa chinensis HOM05D007741 ORTHO05D011461 3.2e-16 90.1 128 47.7
FvH4_6g29890 Fragaria vesca HOM05D007741 ORTHO05D014215 5.4e-16 89.4 89 60.7
RcHm_v2.0_Chr4g0413331 Rosa chinensis HOM05D028330 ORTHO05D343215 5.4e-16 89.4 156 46.2
RcHm_v2.0_Chr6g0295101 Rosa chinensis HOM05D007741 ORTHO05D035834 2.0e-15 87.4 114 47.4
RcHm_v2.0_Chr2g0150711 Rosa chinensis HOM05D007741 ORTHO05D343767 2.7e-15 87.0 125 48.0
FAN21G2484 Fragaria x ananassa HOM05D007741 ORTHO05D014215 4.6e-15 86.3 152 39.5
RcHm_v2.0_Chr1g0319561 Rosa chinensis HOM05D007741 ORTHO05D342843 5.9e-15 85.9 159 40.9
RcHm_v2.0_Chr7g0215471 Rosa chinensis HOM05D007741 ORTHO05D346134 1.0e-14 85.1 102 51.0
FAN10G3035 Fragaria x ananassa HOM05D010166 ORTHO05D207531 1.3e-14 84.7 114 50.0
FAN17G1839 Fragaria x ananassa HOM05D010166 ORTHO05D204969 1.7e-14 84.3 100 54.0
FAN15G0375 Fragaria x ananassa HOM05D007741 ORTHO05D014215 3.9e-14 83.2 93 53.8
FAN11G3088 Fragaria x ananassa HOM05D010166 ORTHO05D210407 5.0e-14 82.8 100 53.0
FAN02G2687 Fragaria x ananassa HOM05D007741 ORTHO05D211123 2.5e-13 80.5 106 49.1
FAN05G2149 Fragaria x ananassa HOM05D007741 ORTHO05D016318 2.5e-13 80.5 60 76.7
FAN11G1752 Fragaria x ananassa HOM05D007741 ORTHO05D204122 4.3e-13 79.7 117 44.4
FAN26G3015 Fragaria x ananassa HOM05D007741 ORTHO05D199990 7.3e-13 79.0 90 50.0
FAN11G1680 Fragaria x ananassa HOM05D007741 ORTHO05D204100 9.5e-13 78.6 89 53.9
FAN14G3085 Fragaria x ananassa HOM05D007741 ORTHO05D201723 1.2e-12 78.2 135 42.2
FAN16G3080 Fragaria x ananassa HOM05D007761 ORTHO05D000537 1.2e-12 78.2 206 33.5
FAN14G1493 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.6e-12 77.8 94 47.9
FAN25G1610 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.6e-12 77.8 94 47.9
FAN27G1171 Fragaria x ananassa HOM05D007761 ORTHO05D011083 1.6e-12 77.8 113 43.4
RcHm_v2.0_Chr3g0459951 Rosa chinensis HOM05D007741 ORTHO05D342834 1.6e-12 77.8 94 52.1
FAN08G0423 Fragaria x ananassa HOM05D007761 ORTHO05D207630 2.1e-12 77.4 183 34.4
FAN08G3184 Fragaria x ananassa HOM05D007761 ORTHO05D206550 2.1e-12 77.4 183 34.4
RcHm_v2.0_Chr6g0280951 Rosa chinensis HOM05D007761 ORTHO05D011461 2.1e-12 77.4 136 41.9
FAN05G5109 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.8e-12 77.0 94 47.9
FAN20G2857 Fragaria x ananassa HOM05D017632 ORTHO05D029434 2.8e-12 77.0 63 66.7
FAN27G1253 Fragaria x ananassa HOM05D007761 ORTHO05D011461 3.6e-12 76.6 202 33.2
FAN01G0683 Fragaria x ananassa HOM05D007761 ORTHO05D011461 4.7e-12 76.3 231 30.3
FAN04G2478 Fragaria x ananassa HOM05D007761 ORTHO05D011461 6.2e-12 75.9 113 42.5
FAN06G3287 Fragaria x ananassa HOM05D007761 ORTHO05D011461 6.2e-12 75.9 231 29.9
FAN12G0192 Fragaria x ananassa HOM05D007761 ORTHO05D011461 8.0e-12 75.5 231 30.3
RcHm_v2.0_Chr4g0424711 Rosa chinensis HOM05D007741 ORTHO05D006912 8.0e-12 75.5 84 51.2
FAN07G1261 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.4e-11 74.7 94 45.7
FAN10G2127 Fragaria x ananassa HOM05D022609 ORTHO05D029410 1.4e-11 74.7 73 54.8
FAN05G2747 Fragaria x ananassa HOM05D015953 ORTHO05D202276 1.8e-11 74.3 90 48.9
FAN10G3275 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.8e-11 74.3 231 30.7
FvH4_2g30030 Fragaria vesca HOM05D017632 ORTHO05D029434 2.3e-11 73.9 124 44.4
FAN20G0086 Fragaria x ananassa HOM05D007761 ORTHO05D035530 3.1e-11 73.6 133 36.1
FAN08G3144 Fragaria x ananassa HOM05D007761 ORTHO05D011461 6.8e-11 72.4 206 32.0
FAN19G0161 Fragaria x ananassa HOM05D007741 ORTHO05D204998 2.0e-10 70.9 122 44.3
FAN28G2015 Fragaria x ananassa HOM05D010166 ORTHO05D205652 2.0e-10 70.9 100 48.0
FAN17G2775 Fragaria x ananassa HOM05D007741 ORTHO05D206244 2.6e-10 70.5 67 62.7
FAN12G3907 Fragaria x ananassa HOM05D022609 ORTHO05D029410 3.4e-10 70.1 79 57.0
FAN20G1840 Fragaria x ananassa HOM05D007741 ORTHO05D202158 3.4e-10 70.1 118 43.2
FAN15G1618 Fragaria x ananassa HOM05D007761 ORTHO05D011461 4.4e-10 69.7 107 43.0
FAN04G2389 Fragaria x ananassa HOM05D007761 ORTHO05D011461 9.8e-10 68.6 185 33.5
FAN22G0676 Fragaria x ananassa HOM05D007741 ORTHO05D204708 9.8e-10 68.6 70 60.0
FAN22G2406 Fragaria x ananassa HOM05D007741 ORTHO05D210186 9.8e-10 68.6 70 60.0
FAN06G3588 Fragaria x ananassa HOM05D007741 ORTHO05D201100 1.7e-09 67.8 87 55.2
FAN12G3425 Fragaria x ananassa HOM05D008445 ORTHO05D011083 2.2e-09 67.4 142 40.8
FAN12G3955 Fragaria x ananassa HOM05D007761 ORTHO05D015647 2.2e-09 67.4 132 37.9
FAN16G1673 Fragaria x ananassa HOM05D007741 ORTHO05D035834 4.9e-09 66.2 77 49.4
FAN09G4565 Fragaria x ananassa HOM05D007761 ORTHO05D015647 1.4e-08 64.7 106 40.6
FAN18G4536 Fragaria x ananassa HOM05D007761 ORTHO05D015647 2.4e-08 63.9 77 49.4
FAN24G1718 Fragaria x ananassa HOM05D000542 ORTHO05D000202 5.4e-08 62.8 85 44.7
FAN03G0027 Fragaria x ananassa HOM05D060314 ORTHO05D022710 7.0e-08 62.4 56 57.1
FAN27G1809 Fragaria x ananassa HOM05D007761 ORTHO05D206830 7.0e-08 62.4 93 40.9
FAN06G2936 Fragaria x ananassa HOM05D007741 ORTHO05D203393 1.2e-07 61.6 63 61.9
FAN08G0278 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.2e-07 61.6 94 43.6
FAN13G1293 Fragaria x ananassa HOM05D007741 ORTHO05D203552 1.6e-07 61.2 53 66.0
FAN18G1114 Fragaria x ananassa HOM05D008445 ORTHO05D020651 1.6e-07 61.2 121 42.1
RcHm_v2.0_Chr4g0405571 Rosa chinensis HOM05D007741 ORTHO05D343499 1.6e-07 61.2 138 41.3
FAN05G3071 Fragaria x ananassa HOM05D007761 ORTHO05D209680 2.0e-07 60.8 57 56.1
RcHm_v2.0_Chr3g0447381 Rosa chinensis HOM05D007761 ORTHO05D022710 2.7e-07 60.5 49 65.3
FAN24G0486 Fragaria x ananassa HOM05D007761 ORTHO05D011461 3.5e-07 60.1 208 34.1
FAN09G2793 Fragaria x ananassa HOM05D007741 ORTHO05D204231 4.6e-07 59.7 80 46.2
FvH4_5g02251 Fragaria vesca HOM05D000005 ORTHO05D000294 6.0e-07 59.3 96 43.8
FAN08G2524 Fragaria x ananassa HOM05D000025 ORTHO05D000040 6.0e-07 59.3 71 49.3
FAN02G0387 Fragaria x ananassa HOM05D007761 ORTHO05D011083 7.8e-07 58.9 92 43.5
FAN05G4712 Fragaria x ananassa HOM05D007761 ORTHO05D022710 7.8e-07 58.9 53 56.6
FAN12G2794 Fragaria x ananassa HOM05D007741 ORTHO05D210173 7.8e-07 58.9 74 56.8
FAN24G0104 Fragaria x ananassa HOM05D007741 ORTHO05D208640 1.0e-06 58.5 77 46.8
FAN28G1246 Fragaria x ananassa HOM05D007761 ORTHO05D202161 1.0e-06 58.5 92 43.5
FAN13G3075 Fragaria x ananassa HOM05D001229 ORTHO05D001374 1.3e-06 58.2 97 35.1
FAN15G2010 Fragaria x ananassa HOM05D000542 ORTHO05D000202 1.3e-06 58.2 70 48.6
FAN11G0210 Fragaria x ananassa HOM05D038588 ORTHO05D045961 1.7e-06 57.8 91 39.6
FAN07G1281 Fragaria x ananassa HOM05D007741 ORTHO05D016318 3.9e-06 56.6 49 65.3
FAN22G1122 Fragaria x ananassa HOM05D007761 ORTHO05D011461 3.9e-06 56.6 50 56.0
FAN25G2115 Fragaria x ananassa HOM05D007741 ORTHO05D014215 3.9e-06 56.6 90 43.3
FvH4_6g19980 Fragaria vesca HOM05D007761 ORTHO05D035530 5.0e-06 56.2 231 29.0
FAN22G0658 Fragaria x ananassa HOM05D006606 ORTHO05D008429 5.0e-06 56.2 48 62.5
FAN24G2548 Fragaria x ananassa HOM05D000542 ORTHO05D000202 5.0e-06 56.2 101 38.6
FAN23G2308 Fragaria x ananassa HOM05D007741 ORTHO05D014215 6.6e-06 55.8 86 43.0
FAN01G0429 Fragaria x ananassa HOM05D007761 ORTHO05D011461 8.6e-06 55.5 50 56.0
FAN18G4494 Fragaria x ananassa HOM05D010166 ORTHO05D209891 8.6e-06 55.5 62 61.3
FAN22G1235 Fragaria x ananassa HOM05D007761 ORTHO05D011461 8.6e-06 55.5 50 56.0
FAN27G0095 Fragaria x ananassa HOM05D007761 ORTHO05D011461 8.6e-06 55.5 50 56.0


User provided reference genes

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