Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 1.4e-31 139.0 72 100.0
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.2e-12 74.7 54 75.9
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.2e-11 72.8 53 75.5
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-11 72.8 53 75.5
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-11 72.8 53 75.5
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-11 72.8 53 75.5
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 3.6e-11 71.2 60 63.3
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.0e-10 69.7 53 73.6
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.4e-10 69.3 55 67.3
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 2.3e-10 68.6 66 63.6
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 8.8e-10 66.6 54 66.7
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 8.8e-10 66.6 58 62.1
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 8.8e-10 66.6 54 66.7
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 8.8e-10 66.6 60 56.7
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 8.8e-10 66.6 56 62.5
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.1e-09 66.2 53 67.9
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.1e-09 66.2 60 61.7
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 1.1e-09 66.2 55 61.8
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.5e-09 65.9 59 59.3
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 2.0e-09 65.5 51 68.6
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 2.5e-09 65.1 63 57.1
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.5e-09 65.1 66 59.1
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.5e-09 65.1 66 59.1
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.5e-09 65.1 66 59.1
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 2.5e-09 65.1 57 63.2
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 2.5e-09 65.1 53 66.0
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.5e-09 65.1 62 56.5
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 3.3e-09 64.7 51 68.6
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 4.3e-09 64.3 62 56.5
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 4.3e-09 64.3 54 63.0
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 4.3e-09 64.3 55 63.6
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 5.7e-09 63.9 53 64.2
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 5.7e-09 63.9 53 66.0
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 5.7e-09 63.9 55 61.8
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 5.7e-09 63.9 62 59.7
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 7.4e-09 63.5 60 56.7
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 7.4e-09 63.5 63 54.0
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 9.7e-09 63.2 55 65.5
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 9.7e-09 63.2 53 64.2
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 9.7e-09 63.2 60 55.0
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 9.7e-09 63.2 60 55.0
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.3e-08 62.8 54 63.0
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 1.3e-08 62.8 51 62.7
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 1.3e-08 62.8 53 66.0
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.7e-08 62.4 53 64.2
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.8e-08 61.6 54 61.1
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.8e-08 61.6 54 61.1
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 2.8e-08 61.6 60 58.3
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 2.8e-08 61.6 59 55.9
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 3.7e-08 61.2 53 62.3
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 3.7e-08 61.2 53 62.3
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.7e-08 61.2 67 52.2
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 3.7e-08 61.2 51 64.7
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 3.7e-08 61.2 55 60.0
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 3.7e-08 61.2 53 62.3
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 4.8e-08 60.8 50 64.0
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 4.8e-08 60.8 50 64.0
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 6.3e-08 60.5 55 60.0
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 8.2e-08 60.1 55 58.2
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 8.2e-08 60.1 54 59.3
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 8.2e-08 60.1 53 60.4
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.2e-08 60.1 56 57.1
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.1e-07 59.7 51 62.7
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.4e-07 59.3 53 62.3
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.4e-07 59.3 46 65.2
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 1.8e-07 58.9 44 65.9
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.8e-07 58.9 63 55.6
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.8e-07 58.9 53 56.6
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.4e-07 58.5 47 63.8
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.4e-07 58.5 60 51.7
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 5.3e-07 57.4 53 56.6
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 5.3e-07 57.4 49 59.2
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 5.3e-07 57.4 43 65.1
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 6.9e-07 57.0 56 53.6
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 6.9e-07 57.0 48 62.5
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 9.1e-07 56.6 49 59.2
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 9.1e-07 56.6 55 52.7
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.2e-06 56.2 50 58.0
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.2e-06 56.2 46 63.0
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.5e-06 55.8 50 58.0
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 2.0e-06 55.5 48 58.3
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.4e-06 54.7 37 78.4
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 4.5e-06 54.3 62 48.4
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 4.5e-06 54.3 50 54.0
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 5.9e-06 53.9 51 52.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 5.9e-06 53.9 48 56.2
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 5.9e-06 53.9 48 56.2
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 7.7e-06 53.5 44 59.1


User provided reference genes

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