Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 4.3e-142 508.1 269 100.0
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 3.4e-123 445.3 261 84.3
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.4e-123 445.3 261 84.3
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.7e-122 441.8 261 83.9
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 5.4e-121 438.0 261 83.1
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.9e-119 431.8 261 82.0
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.1e-118 430.3 261 80.8
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 2.5e-118 429.1 261 80.1
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.3e-118 428.3 261 80.5
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 2.4e-113 412.5 261 75.9
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.9e-110 402.9 261 73.9
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 2.3e-103 379.4 261 69.0
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 6.6e-103 377.9 261 68.6
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 2.8e-101 372.5 261 66.7
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 4.8e-101 371.7 261 65.5
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 1.8e-100 369.8 261 65.9
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 6.9e-100 367.9 261 67.4
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 1.5e-99 366.7 261 65.9
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 2.0e-99 366.3 261 67.0
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 2.6e-99 365.9 261 67.8
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 7.6e-99 364.4 261 65.1
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 7.6e-99 364.4 261 65.1
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 8.4e-98 360.9 261 67.4
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 2.4e-97 359.4 261 63.6
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 3.2e-97 359.0 261 64.0
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 5.4e-97 358.2 262 65.3
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 7.1e-97 357.8 262 64.9
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 9.3e-97 357.5 261 63.6
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.6e-96 356.7 268 64.2
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 3.5e-96 355.5 261 65.5
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 4.6e-96 355.1 261 63.6
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 6.0e-96 354.8 261 63.6
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 7.9e-96 354.4 261 63.2
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 1.0e-95 354.0 268 62.3
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 1.3e-95 353.6 262 64.1
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.8e-95 353.2 261 62.8
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 2.3e-95 352.8 261 63.6
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 1.5e-94 350.1 261 62.8
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 2.5e-94 349.4 261 61.3
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 4.3e-94 348.6 261 62.1
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 7.4e-94 347.8 267 62.2
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 7.4e-94 347.8 261 62.1
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 1.3e-93 347.1 261 62.1
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 1.3e-93 347.1 261 61.7
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 3.6e-93 345.5 288 57.6
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 3.6e-93 345.5 261 61.7
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 4.8e-93 345.1 263 60.8
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 4.8e-93 345.1 261 61.3
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 8.1e-93 344.4 261 61.3
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 3.1e-92 342.4 261 62.5
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 4.0e-92 342.0 261 63.2
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 3.4e-91 339.0 262 61.1
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 7.6e-91 337.8 286 58.0
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.3e-90 337.0 269 61.0
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 1.7e-90 336.7 288 57.6
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 2.2e-90 336.3 261 59.8
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 3.8e-90 335.5 268 60.1
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 3.8e-90 335.5 261 60.2
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 3.8e-90 335.5 261 60.5
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 1.1e-89 334.0 280 58.6
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 1.1e-89 334.0 268 58.6
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 4.6e-88 328.6 261 58.6
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 1.8e-87 326.6 261 59.0
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 1.8e-87 326.6 263 58.6
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 3.0e-87 325.9 262 58.4
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 3.9e-87 325.5 279 57.0
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 5.1e-87 325.1 268 58.6
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 5.1e-87 325.1 261 59.0
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 3.3e-86 322.4 262 57.3
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 4.3e-86 322.0 262 59.2
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.7e-85 318.9 261 58.2
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 3.7e-85 318.9 257 58.4
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 1.4e-84 317.0 267 57.3
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 1.8e-84 316.6 261 57.5
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.1e-84 315.8 261 57.5
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 4.0e-84 315.5 269 56.1
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 1.2e-83 313.9 261 58.2
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 2.0e-83 313.2 261 61.3
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 2.0e-83 313.2 261 59.0
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 3.4e-83 312.4 261 60.5
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 9.3e-81 304.3 261 59.4
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 1.0e-79 300.8 242 57.0
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 1.3e-79 300.4 261 52.5
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 5.1e-79 298.5 268 54.9
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 1.3e-77 293.9 246 56.5
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 2.1e-77 293.1 268 55.6
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 3.7e-77 292.4 261 55.6
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 1.1e-76 290.8 261 54.4
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 1.4e-76 290.4 261 54.8
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 6.9e-76 288.1 261 55.2
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 9.0e-76 287.7 259 53.7
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 9.0e-76 287.7 261 55.2
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 2.6e-75 286.2 261 55.6
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 3.4e-75 285.8 262 53.1
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 3.4e-75 285.8 261 54.4
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 4.5e-75 285.4 261 53.6
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.7e-74 283.5 261 53.3
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 6.5e-74 281.6 261 54.4
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 6.5e-74 281.6 261 53.6
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 6.5e-74 281.6 261 53.3
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 5.5e-73 278.5 261 51.7
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 7.2e-73 278.1 260 52.7
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 7.2e-73 278.1 261 51.7
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 1.6e-72 276.9 256 51.2
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 7.9e-72 274.6 261 53.6
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 7.4e-70 268.1 209 59.8
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 3.7e-69 265.8 259 48.6
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 6.3e-69 265.0 208 58.2
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 1.8e-68 263.5 203 62.1
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 3.1e-68 262.7 255 51.0
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.5e-65 253.1 373 40.5
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 5.5e-65 251.9 255 50.6
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 7.2e-65 251.5 262 48.5
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 1.6e-64 250.4 256 49.6
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.6e-64 249.2 268 50.0
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.6e-64 249.2 268 50.0
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 8.8e-63 244.6 301 42.9
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 6.3e-61 238.4 179 62.6
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 1.5e-59 233.8 155 74.2
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.4e-59 232.6 264 48.1
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 5.9e-59 231.9 278 43.9
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 2.2e-58 229.9 256 45.3
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 4.2e-57 225.7 257 47.5
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 1.2e-56 224.2 263 44.1
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 1.6e-56 223.8 224 48.7
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 3.6e-56 222.6 252 46.0
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 1.0e-55 221.1 212 48.1
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 1.8e-55 220.3 253 42.7
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 3.9e-55 219.2 195 56.9
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.2e-55 218.8 268 44.4
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 1.5e-54 217.2 256 43.8
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 2.6e-54 216.5 220 47.3
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 4.1e-52 209.1 224 46.4
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 5.5e-49 198.7 247 40.5
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 4.0e-47 192.6 181 51.9
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 2.0e-46 190.3 234 43.2
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 4.5e-43 179.1 254 37.4
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 7.7e-43 178.3 258 39.1
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 1.1e-41 174.5 142 55.6
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.1e-41 174.5 184 48.9
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 9.4e-41 171.4 93 90.3
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 4.4e-38 162.5 230 39.1
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 2.2e-37 160.2 177 42.4
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 3.1e-36 156.4 93 78.5
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 3.8e-34 149.4 262 36.3
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 2.1e-32 143.7 226 35.4
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 1.4e-31 141.0 112 59.8
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 2.2e-29 133.7 93 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 1.2e-27 127.9 130 49.2
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 1.7e-26 124.0 168 41.7
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 2.1e-24 117.1 91 60.4
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 4.0e-23 112.8 171 36.3
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.5e-22 110.9 80 65.0
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.7e-22 109.0 84 58.3
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 7.5e-22 108.6 103 55.3
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 6.4e-21 105.5 61 77.0
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 5.0e-18 95.9 89 58.4
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 6.6e-18 95.5 145 40.7
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 7.3e-17 92.0 59 71.2
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 3.6e-16 89.7 71 57.7
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 6.2e-16 89.0 72 55.6
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 6.2e-16 89.0 69 52.2
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 1.7e-13 80.9 50 74.0
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.9e-13 80.1 79 51.9
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 5.4e-12 75.9 68 51.5
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 2.3e-10 70.5 80 40.0
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 3.9e-10 69.7 91 42.9
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.5e-09 67.8 70 54.3
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.5e-09 67.0 43 62.8
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 4.3e-09 66.2 75 44.0
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 4.3e-09 66.2 75 44.0
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 5.6e-09 65.9 75 44.0
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 9.5e-09 65.1 40 67.5
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 1.2e-08 64.7 45 66.7
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 2.8e-08 63.5 40 65.0
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 2.8e-08 63.5 40 65.0
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 2.8e-08 63.5 54 55.6
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 2.8e-08 63.5 40 65.0
Lj8A365T12 Lonicera japonica HOM05D000219 ORTHO05D004649 6.2e-08 62.4 36 77.8
C09p23930 Brassica napus HOM05D000219 ORTHO05D017689 1.4e-07 61.2 75 41.3
COL.COLO4_25028 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.4e-07 61.2 43 67.4
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 2.0e-06 57.4 81 39.5
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 2.6e-06 57.0 56 46.4


User provided reference genes

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