Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.6e-252 875.5 437 100.0
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.3e-245 851.3 437 95.9
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 1.4e-243 845.9 434 96.1
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 9.1e-243 843.2 437 95.2
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.2e-215 753.1 439 84.5
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 4.0e-214 748.0 437 83.3
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 6.0e-186 654.4 439 71.8
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.0e-181 639.4 433 71.6
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.4e-179 632.5 433 70.7
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 4.1e-179 631.7 437 69.8
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.2e-178 630.2 429 69.5
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.2e-178 630.2 429 69.5
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 3.5e-178 628.6 438 69.6
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 3.5e-178 628.6 433 69.3
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.3e-177 626.7 428 70.3
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 8.6e-177 624.0 427 70.3
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-176 623.6 434 69.1
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.1e-176 623.6 431 68.7
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.5e-176 622.5 426 68.8
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.3e-176 622.1 424 69.8
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 7.3e-176 620.9 439 69.2
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.2e-175 620.2 434 69.1
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.2e-175 620.2 445 67.9
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.2e-175 620.2 427 70.0
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.6e-175 618.6 429 68.3
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 4.7e-175 618.2 438 69.6
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.7e-175 618.2 452 67.0
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 8.1e-175 617.5 425 70.4
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 5.2e-174 614.8 428 69.9
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 8.9e-174 614.0 427 68.4
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 8.9e-174 614.0 426 67.8
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.2e-173 613.6 425 67.8
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.5e-173 613.2 439 68.6
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.5e-173 613.2 425 69.9
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 3.4e-173 612.1 431 66.8
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 5.8e-173 611.3 425 69.9
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.7e-172 609.8 429 67.8
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.2e-172 609.4 426 68.5
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.9e-172 609.0 428 69.4
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 4.9e-172 608.2 425 69.6
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 4.9e-172 608.2 437 68.9
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 8.4e-172 607.4 427 70.0
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 3.2e-171 605.5 451 66.5
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 4.2e-171 605.1 429 68.1
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 4.2e-171 605.1 439 67.9
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 5.4e-171 604.7 435 67.8
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 9.2e-171 604.0 422 69.7
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 9.2e-171 604.0 409 71.6
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.6e-170 603.2 422 69.2
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.6e-170 603.2 422 69.7
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.7e-170 602.4 439 68.1
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 6.0e-170 601.3 429 68.1
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.3e-169 600.1 422 69.0
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 1.7e-169 599.7 427 67.0
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 2.3e-169 599.4 426 68.3
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 2.3e-169 599.4 430 67.2
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 5.1e-169 598.2 481 62.8
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 3.3e-168 595.5 426 68.1
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.6e-167 593.2 428 66.8
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 8.1e-167 590.9 433 66.5
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.4e-166 590.1 435 65.1
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.8e-166 589.7 433 67.4
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 2.4e-166 589.3 464 63.4
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 3.1e-166 589.0 430 66.3
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 4.0e-166 588.6 426 68.5
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 5.3e-166 588.2 433 67.4
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.2e-165 587.0 433 66.3
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 2.6e-165 585.9 433 67.0
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 5.8e-165 584.7 425 66.4
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.3e-164 583.6 433 66.7
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 2.9e-164 582.4 445 64.3
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.9e-164 582.4 488 60.9
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.1e-163 580.5 436 64.0
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 1.9e-163 579.7 436 65.1
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 4.2e-163 578.6 458 61.8
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.6e-162 575.1 435 64.4
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 3.0e-161 572.4 436 65.8
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 3.0e-161 572.4 439 64.9
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 3.3e-160 568.9 395 67.3
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 9.6e-160 567.4 446 62.8
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 9.6e-160 567.4 434 65.0
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.1e-152 543.9 398 67.6
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 4.3e-152 542.0 375 68.3
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 4.3e-152 542.0 422 64.0
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.3e-151 540.4 421 64.4
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 1.2e-146 523.9 385 65.7
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 1.3e-145 520.4 428 61.9
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 1.4e-142 510.4 399 63.7
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.4e-142 509.6 425 61.4
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 5.3e-142 508.4 344 72.4
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 6.5e-140 501.5 433 58.4
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 1.4e-139 500.4 438 57.1
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.3e-137 493.8 369 64.5
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.8e-137 493.4 341 71.6
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 3.9e-137 492.3 396 62.4
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.5e-136 489.6 334 72.5
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 2.0e-133 479.9 414 56.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.2e-131 471.5 404 59.7
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 1.8e-129 466.8 355 62.5
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 3.9e-129 465.7 417 58.3
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 7.4e-128 461.5 336 67.3
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 2.2e-127 459.9 334 67.7
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 3.8e-124 449.1 417 53.5
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 6.7e-121 438.3 343 64.1
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 6.7e-121 438.3 446 52.2
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 4.4e-120 435.6 325 63.1
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 2.2e-119 433.3 408 54.7
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.5e-115 420.6 437 54.7
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.8e-111 406.4 312 62.8
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 2.3e-105 386.7 572 38.3
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.3e-103 378.3 425 48.7
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 9.1e-102 374.8 334 57.2
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 4.5e-93 345.9 275 61.8
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.3e-92 344.4 274 60.6
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.7e-92 344.0 273 59.7
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.6e-90 336.3 377 50.7
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 4.7e-90 335.9 274 61.7
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.4e-86 324.3 371 50.9
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.7e-84 317.4 208 69.2
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.3e-84 317.0 250 61.2
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 8.9e-81 305.1 235 67.7
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.5e-80 304.3 428 39.7
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.3e-76 291.2 235 61.3
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 8.6e-76 288.5 427 40.3
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.5e-75 287.7 343 46.9
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.6e-74 284.3 397 41.1
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 3.4e-72 276.6 474 38.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 7.1e-70 268.9 216 61.1
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.9e-67 260.8 152 78.3
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 4.3e-67 259.6 150 80.0
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.3e-67 258.8 140 91.4
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.2e-61 241.5 156 73.7
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.2e-61 241.5 364 39.8
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.7e-60 237.7 140 81.4
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.3e-60 237.3 147 76.2
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 3.3e-59 233.4 181 64.6
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 1.1e-57 228.4 416 35.6
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 2.9e-55 220.3 429 35.0
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 3.0e-52 210.3 259 49.4
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 6.4e-47 192.6 117 77.8
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.2e-46 190.3 135 68.1
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 2.2e-39 167.5 111 70.3
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.2e-29 135.2 92 67.4
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.2e-29 135.2 92 67.4
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 1.3e-28 131.7 123 61.8
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 5.1e-28 129.8 425 27.3
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.1e-26 124.4 94 64.9
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.2e-22 110.5 62 79.0
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 8.5e-15 85.9 331 26.0
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 3.0e-12 77.4 108 43.5
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.5e-11 75.1 57 57.9
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.1e-09 68.9 43 67.4
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-09 68.9 45 73.3
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 1.5e-08 65.1 53 58.5
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 4.5e-08 63.5 52 50.0
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 4.5e-08 63.5 52 50.0
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 7.7e-08 62.8 52 50.0


User provided reference genes

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