Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 4.3e-256 887.5 448 100.0
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 6.2e-231 803.9 449 91.3
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.1e-230 801.6 449 90.9
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.6e-226 787.7 449 89.1
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.9e-224 782.3 449 89.5
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 3.4e-205 718.4 448 79.9
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 4.5e-205 718.0 449 80.0
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 6.3e-175 617.8 353 87.8
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 3.0e-164 582.4 450 65.6
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 3.3e-163 578.9 449 66.1
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 3.1e-161 572.4 448 65.6
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 2.2e-159 566.2 432 64.8
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 3.0e-156 555.8 442 62.7
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.5e-155 553.5 415 67.0
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.5e-155 553.5 415 67.0
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 5.4e-150 535.0 443 61.4
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 7.1e-150 534.6 448 60.5
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 2.3e-148 529.6 450 60.2
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 3.0e-148 529.3 440 60.0
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 3.9e-148 528.9 447 58.6
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 6.6e-148 528.1 441 59.9
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.9e-147 526.6 440 59.5
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 4.3e-147 525.4 433 59.8
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 5.6e-147 525.0 427 61.1
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 2.1e-146 523.1 447 59.1
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 1.1e-145 520.8 439 59.0
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 3.1e-145 519.2 418 61.7
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 7.6e-144 514.6 418 61.2
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 1.3e-143 513.8 418 61.2
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 1.3e-143 513.8 465 56.3
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 2.2e-143 513.1 448 57.6
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 4.9e-143 511.9 449 59.7
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 8.4e-143 511.1 418 57.4
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.4e-142 510.4 448 57.1
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 2.4e-142 509.6 431 58.9
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.6e-138 496.9 437 58.6
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 4.7e-138 495.4 430 56.7
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 8.1e-138 494.6 428 58.6
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 4.0e-137 492.3 429 59.0
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 9.0e-137 491.1 422 56.2
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 3.4e-136 489.2 443 56.2
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 3.4e-136 489.2 441 56.2
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 3.4e-136 489.2 441 56.2
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 4.4e-136 488.8 417 58.3
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 4.4e-136 488.8 444 55.6
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 4.4e-136 488.8 444 55.6
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 1.7e-135 486.9 437 57.7
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 1.4e-134 483.8 416 57.0
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 1.9e-134 483.4 426 58.5
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 2.4e-134 483.0 417 58.3
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 3.2e-134 482.6 430 57.0
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 7.8e-133 478.0 420 56.9
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 1.9e-131 473.4 439 54.9
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 2.5e-131 473.0 441 54.2
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 2.8e-130 469.5 442 55.4
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 5.3e-129 465.3 444 53.6
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 1.3e-127 460.7 416 56.5
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 4.9e-127 458.8 438 53.2
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.9e-127 458.8 443 51.2
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 9.3e-126 454.5 443 54.2
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 2.7e-125 453.0 440 53.0
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 3.9e-124 449.1 416 55.0
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 1.1e-123 447.6 431 51.5
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 2.5e-123 446.4 416 54.1
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 9.6e-123 444.5 427 52.2
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 2.1e-122 443.4 430 52.3
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 3.7e-122 442.6 445 51.0
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.5e-120 437.2 430 51.6
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 1.3e-114 417.5 416 51.2
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 6.9e-113 411.8 428 51.6
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 3.4e-112 409.5 435 48.3
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 6.5e-111 405.2 411 51.8
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 7.1e-110 401.7 356 60.1
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 8.7e-108 394.8 386 52.1
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 8.7e-108 394.8 444 48.2
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 3.3e-107 392.9 419 47.0
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 7.7e-104 381.7 322 59.0
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 1.7e-103 380.6 447 47.0
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.0e-100 371.3 444 46.6
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 1.5e-99 367.5 442 44.1
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.5e-99 367.5 418 48.6
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 1.1e-97 361.3 440 46.6
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 1.1e-97 361.3 440 46.4
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 2.4e-97 360.1 439 45.3
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 2.4e-97 360.1 440 46.1
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 1.7e-95 354.0 439 45.1
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 2.2e-95 353.6 431 47.3
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 7.2e-94 348.6 418 44.7
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 1.4e-92 344.4 417 44.6
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.1e-86 324.7 448 43.3
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 3.9e-84 316.2 446 38.8
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 2.3e-76 290.4 299 50.2
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 3.4e-75 286.6 249 54.6
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 5.7e-75 285.8 294 49.0
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 9.1e-73 278.5 236 54.7
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 3.0e-68 263.5 417 37.2
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.1e-65 255.0 217 55.8
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 6.8e-60 235.7 405 34.8
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 5.4e-57 226.1 185 56.8
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 7.3e-54 215.7 403 34.5
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.8e-44 184.5 178 49.4
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 5.2e-44 183.0 170 50.6
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 2.5e-38 164.1 179 47.5
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 5.8e-35 152.9 448 27.7
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.4e-33 148.3 171 45.6
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 3.2e-33 147.1 139 52.5
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 9.2e-33 145.6 124 55.6
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 9.2e-33 145.6 124 55.6
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 5.6e-30 136.3 219 37.4
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 9.6e-30 135.6 132 52.3
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 3.1e-28 130.6 424 23.6
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 5.2e-28 129.8 134 50.0
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 8.9e-28 129.0 209 36.4
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 4.4e-27 126.7 123 52.0
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 1.3e-26 125.2 120 50.8
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.3e-26 125.2 146 43.8
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 2.9e-18 97.4 107 48.6
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 3.2e-17 94.0 105 48.6
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 7.1e-17 92.8 137 40.1
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 1.0e-15 89.0 129 39.5
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 1.3e-13 82.0 164 35.4
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 1.3e-10 72.0 118 37.3
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.8e-10 70.5 91 39.6
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 2.4e-09 67.8 97 38.1
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 3.2e-09 67.4 98 35.7
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 7.1e-09 66.2 218 24.3
Haze_03379 Corylus avellana HOM05D001269 ORTHO05D001083 9.3e-09 65.9 57 59.6
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 1.6e-08 65.1 91 37.4
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.1e-08 64.7 101 33.7
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.1e-08 64.7 101 33.7
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 2.7e-08 64.3 102 39.2
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 3.5e-08 63.9 96 34.4
SMO271G0164 Selaginella moellendorffii HOM05D004079 ORTHO05D005437 4.6e-08 63.5 117 35.0
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 6.0e-08 63.2 91 35.2
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 7.9e-08 62.8 96 29.2
HPP92_004920 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.8e-07 61.6 62 41.9
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 2.3e-07 61.2 91 34.1
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 2.3e-07 61.2 106 35.8
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 3.0e-07 60.8 101 33.7
arahy.Tifrunner.gnm1.ann1.JW8TM2 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.1e-06 58.9 58 46.6
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.5e-06 58.5 91 31.9
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 1.5e-06 58.5 101 31.7
A08p30100 Brassica napus HOM05D004079 ORTHO05D005437 1.9e-06 58.2 94 34.0
BraA08t34945Z Brassica rapa HOM05D004079 ORTHO05D005437 1.9e-06 58.2 94 34.0
Cfa005772 Carpinus fangiana HOM05D004127 ORTHO05D005119 1.9e-06 58.2 101 30.7
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.9e-06 58.2 106 33.0
C08p19050 Brassica napus HOM05D004079 ORTHO05D005437 2.5e-06 57.8 94 34.0
BolC8t49530H Brassica oleracea HOM05D004079 ORTHO05D005437 2.5e-06 57.8 94 34.0
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.5e-06 57.8 101 30.7
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 2.5e-06 57.8 101 31.7
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 2.5e-06 57.8 241 20.3
BcaB03g12947 Brassica carinata HOM05D004079 ORTHO05D005437 3.3e-06 57.4 94 33.0
AT1G74750 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 5.6e-06 56.6 95 32.6
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 5.6e-06 56.6 101 29.7
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 5.6e-06 56.6 101 29.7
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 5.6e-06 56.6 101 29.7
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 5.6e-06 56.6 101 32.7
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 5.6e-06 56.6 101 30.7
Haze_05068 Corylus avellana HOM05D004127 ORTHO05D005119 7.4e-06 56.2 101 29.7
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 7.4e-06 56.2 101 30.7
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 7.4e-06 56.2 101 29.7
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 9.6e-06 55.8 101 30.7


User provided reference genes

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