Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 7.6e-86 320.5 163 100.0
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 8.8e-58 227.3 147 78.2
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.1e-57 226.9 163 77.9
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 4.4e-57 224.9 163 76.7
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.8e-56 222.2 164 76.2
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.7e-56 221.9 148 75.7
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 6.1e-43 177.9 149 68.5
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 3.4e-41 172.2 127 68.5
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 9.7e-41 170.6 132 66.7
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 8.3e-40 167.5 120 71.7
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 1.4e-39 166.8 127 67.7
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 2.0e-33 146.4 124 61.3
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 2.8e-32 142.5 118 60.2
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 3.7e-32 142.1 124 64.5
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 2.4e-31 139.4 118 59.3
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 1.6e-30 136.7 148 54.1
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 2.3e-29 132.9 140 53.6
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.5e-28 129.4 135 51.9
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 7.2e-28 127.9 135 51.1
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 9.5e-28 127.5 110 61.8
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.1e-27 126.3 146 50.0
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 2.1e-27 126.3 112 58.9
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 1.0e-26 124.0 105 61.9
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.5e-25 120.2 124 52.4
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.6e-25 119.4 124 52.4
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 7.5e-25 117.9 124 50.8
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 2.2e-24 116.3 153 49.0
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 2.8e-24 115.9 145 46.2
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 1.4e-23 113.6 147 44.9
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.0e-22 109.8 164 42.7
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 5.9e-22 108.2 159 45.3
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 1.9e-20 103.2 117 49.6
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 9.5e-20 100.9 124 48.4
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 2.1e-19 99.8 109 49.5
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.1e-19 99.8 106 51.9
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.1e-19 99.8 106 51.9
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 6.1e-19 98.2 154 44.8
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.2e-16 89.7 138 39.9
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 2.2e-16 89.7 132 41.7
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.1e-15 87.4 104 44.2
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.1e-15 87.4 123 44.7
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 1.4e-15 87.0 119 43.7
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 1.9e-15 86.7 114 48.2
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 4.1e-15 85.5 99 47.5
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 4.1e-15 85.5 113 46.0
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 5.4e-15 85.1 135 42.2
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.2e-14 84.0 93 49.5
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 1.2e-14 84.0 106 42.5
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 1.6e-14 83.6 91 49.5
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 2.0e-14 83.2 91 49.5
vmacro17329 Vaccinium macrocarpon HOM05D007970 ORTHO05D009943 1.0e-13 80.9 98 46.9
Gohir.A01G170700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.3e-13 79.7 124 41.9
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 3.9e-13 79.0 108 45.4
Peaxi162Scf00078g00137 Petunia axillaris HOM05D007970 ORTHO05D009943 1.5e-12 77.0 117 42.7
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.5e-12 76.3 75 52.0
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 2.5e-12 76.3 111 41.4
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 3.3e-12 75.9 90 48.9
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 3.3e-12 75.9 105 42.9
Lj9P400T40 Lonicera japonica HOM05D007970 ORTHO05D009943 4.3e-12 75.5 154 37.0
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 7.3e-12 74.7 112 43.8
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 7.3e-12 74.7 115 41.7
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 7.3e-12 74.7 62 56.5
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 7.3e-12 74.7 120 40.8
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 1.2e-11 73.9 107 40.2
Sc08g0002710 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.1e-10 70.9 102 44.1
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 5.2e-10 68.6 123 39.0
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 6.8e-10 68.2 76 48.7
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 6.8e-10 68.2 138 36.2
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 1.2e-09 67.4 122 40.2
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.5e-09 67.0 122 38.5
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.0e-09 66.6 108 39.8
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.6e-09 66.2 71 49.3
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 2.6e-09 66.2 73 43.8
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 3.4e-09 65.9 88 45.5
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.4e-09 65.9 87 47.1
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.4e-09 65.9 88 45.5
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 3.4e-09 65.9 73 47.9
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 3.4e-09 65.9 138 37.0
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.4e-09 65.5 120 40.8
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.4e-09 65.5 120 40.8
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 4.4e-09 65.5 72 47.2
Sed0004456 Sechium edule HOM05D007970 ORTHO05D009943 4.4e-09 65.5 101 44.6
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 4.4e-09 65.5 73 49.3
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 4.4e-09 65.5 73 49.3
Medtr1g112960 Medicago truncatula HOM05D007970 ORTHO05D009943 5.8e-09 65.1 82 43.9
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 5.8e-09 65.1 130 35.4
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 5.8e-09 65.1 75 49.3
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 9.8e-09 64.3 105 43.8
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 1.3e-08 63.9 77 46.8
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 1.7e-08 63.5 104 42.3
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.7e-08 63.5 104 42.3
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.7e-08 63.5 106 39.6
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 2.2e-08 63.2 82 45.1
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 2.2e-08 63.2 72 50.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 2.9e-08 62.8 86 44.2
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 2.9e-08 62.8 106 39.6
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 3.7e-08 62.4 113 39.8
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.7e-08 62.4 86 44.2
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 3.7e-08 62.4 73 47.9
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 3.7e-08 62.4 64 53.1
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 4.9e-08 62.0 131 36.6
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 4.9e-08 62.0 74 48.6
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 4.9e-08 62.0 104 38.5
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 8.3e-08 61.2 81 46.9
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 8.3e-08 61.2 138 39.1
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 1.1e-07 60.8 94 40.4
Migut.B00057 Erythranthe guttata HOM05D007970 ORTHO05D009943 1.9e-07 60.1 105 39.0
Nitab4.5_0000079g0240 Nicotiana tabacum HOM05D007970 ORTHO05D009943 2.4e-07 59.7 55 50.9
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 2.4e-07 59.7 58 48.3
Sed0017981 Sechium edule HOM05D007970 ORTHO05D009943 3.2e-07 59.3 67 55.2
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 4.1e-07 58.9 131 35.1
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 4.1e-07 58.9 149 32.2
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 4.1e-07 58.9 108 41.7
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 5.4e-07 58.5 75 45.3
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 5.4e-07 58.5 67 41.8
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 5.4e-07 58.5 90 38.9
SGA_v2.0_scaffold195G40813 Striga asiatica HOM05D007970 ORTHO05D009943 5.4e-07 58.5 63 54.0
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 7.1e-07 58.2 123 35.8
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 7.1e-07 58.2 108 39.8
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 9.2e-07 57.8 75 45.3
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 9.2e-07 57.8 109 37.6
EL10Ac9g21340 Beta vulgaris HOM05D026051 ORTHO05D009943 1.2e-06 57.4 105 37.1
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.2e-06 57.4 107 34.6
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.2e-06 57.4 73 45.2
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.2e-06 57.4 106 39.6
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.2e-06 57.4 100 36.0
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 1.6e-06 57.0 88 47.7
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.6e-06 57.0 100 34.0
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 1.6e-06 57.0 118 35.6
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 2.1e-06 56.6 83 38.6
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 2.7e-06 56.2 80 41.2
SGA_v2.0_scaffold58G20343 Striga asiatica HOM05D007970 ORTHO05D009943 2.7e-06 56.2 107 39.3
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 3.5e-06 55.8 97 41.2
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 3.5e-06 55.8 81 44.4
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 4.6e-06 55.5 112 37.5


User provided reference genes

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