Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 1.4e-195 686.0 336 100.0
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 2.9e-164 582.0 325 89.2
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 3.8e-164 581.6 324 88.9
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 5.5e-163 577.8 381 79.0
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.4e-142 510.0 376 73.1
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 5.3e-142 508.1 323 79.3
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.1e-136 490.3 340 77.1
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 1.7e-135 486.5 328 75.6
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 2.9e-124 449.1 326 70.2
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 8.0e-122 441.0 301 71.8
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 2.0e-120 436.4 277 74.4
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 2.6e-120 436.0 318 68.9
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 9.7e-120 434.1 281 74.0
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 1.8e-118 429.9 323 66.9
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 2.4e-118 429.5 306 69.6
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 7.0e-118 427.9 275 75.3
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 7.0e-118 427.9 264 76.5
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 2.0e-117 426.4 275 74.5
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 4.5e-117 425.2 328 65.2
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 1.7e-116 423.3 328 65.2
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 8.5e-116 421.0 286 69.9
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 1.6e-114 416.8 322 65.8
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 2.7e-114 416.0 275 72.0
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 5.2e-113 411.8 313 64.5
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 8.8e-113 411.0 322 64.0
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 1.5e-112 410.2 310 64.5
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 7.5e-112 407.9 275 70.9
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 2.2e-111 406.4 274 70.8
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 1.4e-110 403.7 263 73.8
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 7.0e-110 401.4 274 70.1
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 5.9e-109 398.3 323 62.8
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 7.7e-109 397.9 295 66.4
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 7.7e-109 397.9 278 67.3
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 1.7e-108 396.7 361 57.9
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 8.6e-108 394.4 281 65.8
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 4.7e-106 388.7 273 68.1
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 4.7e-106 388.7 278 66.9
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 6.1e-106 388.3 263 70.0
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 5.2e-105 385.2 318 60.7
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 6.8e-105 384.8 270 65.6
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 1.3e-103 380.6 265 70.9
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 1.3e-103 380.6 266 70.3
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 1.3e-103 380.6 323 59.8
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 4.1e-102 375.6 292 59.6
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 2.0e-101 373.2 323 56.0
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 6.6e-100 368.2 257 68.1
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 8.6e-100 367.9 330 56.7
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 8.6e-100 367.9 323 59.8
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 9.5e-99 364.4 315 56.8
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 3.6e-98 362.5 274 65.7
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 3.4e-96 355.9 262 67.9
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 3.7e-95 352.4 280 59.6
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 1.1e-94 350.9 234 72.2
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 2.3e-92 343.2 342 50.6
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 3.0e-92 342.8 267 59.9
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 8.6e-92 341.3 295 60.3
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 5.6e-91 338.6 273 62.3
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 2.8e-82 309.7 229 65.1
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 3.1e-81 306.2 309 50.2
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 9.2e-78 294.7 224 63.4
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 1.0e-76 291.2 249 59.0
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 1.3e-76 290.8 201 69.2
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 1.1e-65 254.6 290 44.5
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 3.2e-62 243.0 148 84.5
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 1.1e-54 218.0 314 41.1
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 2.1e-50 203.8 298 39.6
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 1.8e-49 200.7 334 38.9
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 9.0e-49 198.4 205 53.7
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 4.6e-45 186.0 201 47.8
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 4.6e-37 159.5 288 36.1
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 1.3e-36 157.9 88 83.0
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 1.1e-35 154.8 199 45.2
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 2.2e-34 150.6 326 34.7
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 1.4e-25 121.3 88 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 3.4e-24 116.7 135 44.4
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 1.0e-20 105.1 70 74.3
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 6.7e-12 75.9 94 44.7
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 2.6e-11 73.9 298 21.5
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 2.8e-10 70.5 287 21.3
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 5.3e-09 66.2 42 71.4
MCO04G494 Micromonas commoda HOM05D002360 ORTHO05D006971 1.2e-08 65.1 283 21.6
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 2.0e-08 64.3 297 22.6
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 2.6e-08 63.9 288 20.8
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 3.5e-08 63.5 290 22.4
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 4.5e-08 63.2 57 56.1
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 5.9e-08 62.8 298 21.8
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 5.9e-08 62.8 298 21.8
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 6.5e-07 59.3 292 19.9
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 8.5e-07 58.9 289 20.1
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 1.1e-06 58.5 332 21.4
Migut.O00487 Erythranthe guttata HOM05D002360 ORTHO05D006297 1.5e-06 58.2 293 18.8
TWI56G0448 Tripterygium wilfordii HOM05D000461 ORTHO05D006079 5.5e-06 56.2 63 52.4


User provided reference genes

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