Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 4.2e-93 344.7 181 100.0
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.9e-87 324.3 181 93.9
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.5e-86 320.9 181 93.4
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.9e-85 319.3 181 92.8
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 2.3e-83 312.4 181 91.7
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.3e-83 312.4 181 91.7
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 2.5e-82 308.9 181 91.2
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 7.4e-74 280.8 181 84.0
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 4.2e-69 265.0 182 79.7
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 7.4e-66 254.2 181 74.6
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 7.0e-64 247.7 183 74.3
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 2.0e-63 246.1 185 74.6
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 7.2e-61 237.7 179 74.3
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 7.2e-61 237.7 179 74.3
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 6.1e-60 234.6 186 72.6
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.0e-58 229.6 184 67.4
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 3.7e-57 225.3 186 67.7
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 8.3e-57 224.2 187 71.7
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.1e-56 223.8 157 80.9
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.4e-56 223.4 187 67.9
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 2.4e-56 222.6 186 68.8
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 3.1e-56 222.2 187 67.9
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 7.0e-56 221.1 184 67.9
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.2e-55 220.3 191 68.1
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 1.6e-55 219.9 186 67.7
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 2.0e-55 219.5 182 71.4
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 2.7e-55 219.2 190 65.8
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 3.5e-55 218.8 188 67.6
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 4.5e-55 218.4 186 67.7
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 5.9e-55 218.0 191 66.0
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 7.7e-55 217.6 189 66.7
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 1.7e-54 216.5 187 66.8
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 2.9e-54 215.7 190 66.8
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 3.8e-54 215.3 184 66.8
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 5.0e-54 214.9 178 69.1
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 6.5e-54 214.5 186 67.2
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 8.5e-54 214.2 188 66.0
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 5.5e-53 211.5 183 68.3
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 7.2e-53 211.1 179 66.5
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 9.4e-53 210.7 188 64.9
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.2e-52 210.3 183 66.7
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.6e-52 209.9 186 65.1
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.6e-52 209.9 184 66.3
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.6e-52 209.9 192 65.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 1.6e-52 209.9 189 65.6
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.1e-52 209.5 184 65.8
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.1e-52 209.5 186 65.1
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.7e-52 209.1 184 65.2
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 4.7e-52 208.4 183 65.0
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 4.7e-52 208.4 183 65.0
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 6.1e-52 208.0 184 65.2
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.0e-51 207.2 189 65.1
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.0e-51 207.2 187 65.8
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 1.4e-51 206.8 182 63.7
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 1.8e-51 206.5 182 63.7
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 3.0e-51 205.7 185 63.8
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 4.0e-51 205.3 193 64.2
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 5.2e-51 204.9 187 63.6
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 6.8e-51 204.5 183 66.1
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 8.8e-51 204.1 182 65.4
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 1.2e-50 203.8 186 62.9
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.5e-50 203.4 186 64.5
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.5e-50 203.4 159 69.2
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 1.5e-50 203.4 187 64.2
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.5e-50 203.4 178 66.9
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.6e-50 202.6 191 61.8
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 4.4e-50 201.8 184 64.1
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 4.4e-50 201.8 184 64.1
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 4.4e-50 201.8 187 63.1
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 5.7e-50 201.4 184 64.1
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 5.7e-50 201.4 190 61.6
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 7.5e-50 201.1 185 62.2
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.3e-49 200.3 182 64.3
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.3e-49 200.3 182 63.2
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 2.8e-49 199.1 182 64.8
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 8.3e-49 197.6 184 63.6
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.1e-48 197.2 182 64.8
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 2.0e-47 193.0 191 61.8
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 4.5e-47 191.8 179 63.7
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 7.7e-47 191.0 203 57.6
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 7.7e-47 191.0 185 60.5
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.3e-46 190.3 184 59.8
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 1.3e-46 190.3 184 60.3
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 2.3e-46 189.5 185 61.1
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 8.6e-46 187.6 182 58.2
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 5.5e-45 184.9 233 50.6
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 5.5e-45 184.9 185 59.5
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 7.2e-45 184.5 121 82.6
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 2.8e-44 182.6 185 60.0
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 1.0e-43 180.6 194 58.2
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 6.8e-43 177.9 128 71.1
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 3.7e-41 172.2 188 57.4
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 8.3e-41 171.0 181 55.2
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.1e-40 170.6 187 59.9
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 1.4e-40 170.2 132 70.5
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.1e-40 169.1 191 55.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 3.1e-40 169.1 192 55.7
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.6e-39 166.8 174 56.3
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 1.3e-38 163.7 197 56.3
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 4.3e-37 158.7 146 59.6
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 7.3e-37 157.9 190 57.9
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.6e-36 156.8 189 57.1
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 5.2e-35 151.8 194 54.6
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 9.8e-34 147.5 195 53.3
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 9.8e-34 147.5 136 60.3
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 4.9e-33 145.2 123 63.4
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 4.6e-31 138.7 182 52.2
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 6.0e-31 138.3 182 52.2
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.3e-30 136.3 127 61.4
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 2.3e-30 136.3 124 63.7
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 2.3e-30 136.3 184 51.1
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 3.0e-30 136.0 123 61.8
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 3.9e-30 135.6 160 51.2
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 6.6e-30 134.8 130 56.9
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 8.6e-30 134.4 96 80.2
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 2.5e-29 132.9 254 42.1
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 3.6e-28 129.0 94 77.7
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.3e-27 126.3 184 47.8
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 4.4e-26 122.1 124 58.1
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 3.7e-25 119.0 89 75.3
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 4.9e-25 118.6 187 44.4
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 9.2e-24 114.4 124 54.8
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.1e-20 103.2 64 95.3
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 2.6e-18 96.3 113 48.7
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 5.8e-18 95.1 106 51.9
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 1.3e-17 94.0 96 54.2
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 2.9e-17 92.8 96 58.3
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 3.9e-14 82.4 126 46.0
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 2.5e-13 79.7 94 48.9
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 7.3e-13 78.2 88 47.7
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.2e-12 77.4 95 49.5
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.8e-11 73.6 141 44.0
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.1e-11 72.8 43 97.7
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 3.4e-10 69.3 85 49.4
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 3.8e-09 65.9 75 53.3
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 1.4e-08 63.9 81 50.6
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 1.4e-08 63.9 81 50.6
SHI15307 Sapria himalayana HOM05D005654 ORTHO05D006438 5.4e-08 62.0 118 38.1
SHI26700 Sapria himalayana HOM05D005654 ORTHO05D006438 7.1e-08 61.6 71 49.3
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 2.7e-07 59.7 87 44.8
Zm00001eb372850 Zea mays HOM05D005654 ORTHO05D006438 2.3e-06 56.6 56 62.5
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 3.0e-06 56.2 60 53.3


User provided reference genes

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