Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 4.8e-85 317.8 158 100.0
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.6e-80 301.2 159 95.0
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 3.9e-79 298.1 159 93.7
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.0e-75 285.8 152 94.7
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 3.2e-73 278.5 157 86.0
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 5.1e-71 271.2 161 85.1
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.2e-69 265.8 158 85.4
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 2.4e-68 262.3 158 79.7
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 4.1e-68 261.5 155 79.4
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 1.2e-67 260.0 158 77.8
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 1.7e-66 256.1 158 78.5
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 3.8e-66 255.0 154 79.9
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 1.1e-65 253.4 149 79.9
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 7.2e-65 250.8 154 75.3
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 1.4e-63 246.5 155 76.1
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.8e-63 246.1 151 78.1
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 2.3e-63 245.7 154 77.9
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 3.9e-63 245.0 155 74.8
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 5.1e-63 244.6 159 76.7
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 6.7e-63 244.2 151 76.8
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 1.1e-62 243.4 154 73.4
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.1e-62 243.4 153 75.8
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.5e-62 243.0 155 74.8
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 2.0e-62 242.7 153 77.1
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 3.3e-62 241.9 153 76.5
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 4.4e-62 241.5 156 74.4
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 4.4e-62 241.5 153 76.5
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 1.3e-61 240.0 150 76.7
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 1.7e-61 239.6 151 77.5
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.2e-61 239.2 155 72.9
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 2.8e-61 238.8 153 72.5
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.7e-61 238.4 157 72.0
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 6.3e-61 237.7 156 75.0
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 6.3e-61 237.7 158 74.1
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 8.2e-61 237.3 150 74.0
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 8.2e-61 237.3 158 75.9
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 8.2e-61 237.3 154 74.0
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.4e-60 235.7 158 68.4
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 2.4e-60 235.7 151 74.8
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 4.1e-60 235.0 158 74.1
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 4.1e-60 235.0 154 72.7
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 5.3e-60 234.6 157 70.1
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 7.0e-60 234.2 157 68.8
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 9.1e-60 233.8 158 74.1
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 9.1e-60 233.8 158 74.1
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 2.0e-59 232.6 158 75.3
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 2.6e-59 232.3 149 73.8
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 3.5e-59 231.9 157 69.4
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 4.5e-59 231.5 157 68.8
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 4.5e-59 231.5 159 71.7
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 1.0e-58 230.3 154 74.7
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 1.3e-58 229.9 155 69.0
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 1.7e-58 229.6 158 72.8
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 1.7e-58 229.6 165 66.7
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 2.2e-58 229.2 158 72.8
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 2.9e-58 228.8 158 72.2
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.9e-58 228.8 157 72.6
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 3.8e-58 228.4 172 66.3
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 3.8e-58 228.4 151 74.2
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 1.5e-57 226.5 151 70.2
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 1.5e-57 226.5 159 71.7
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 1.9e-57 226.1 158 68.4
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 1.9e-57 226.1 157 68.2
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 2.5e-57 225.7 152 67.8
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 5.5e-57 224.6 157 68.8
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 7.2e-57 224.2 154 69.5
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 9.4e-57 223.8 137 75.9
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 8.0e-56 220.7 154 68.8
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 1.0e-55 220.3 150 69.3
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 1.4e-55 219.9 161 65.8
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 1.4e-55 219.9 161 65.8
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 4.0e-55 218.4 157 65.6
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 5.2e-55 218.0 154 66.9
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 6.7e-55 217.6 153 68.0
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 1.5e-54 216.5 150 67.3
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 1.5e-54 216.5 155 66.5
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 2.0e-54 216.1 158 67.1
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 2.0e-54 216.1 158 66.5
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 2.6e-54 215.7 157 64.3
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 4.4e-54 214.9 153 67.3
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 4.4e-54 214.9 154 66.2
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 5.7e-54 214.5 161 65.8
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 5.7e-54 214.5 158 67.7
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 9.7e-54 213.8 153 67.3
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 1.7e-53 213.0 154 64.3
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 3.7e-53 211.8 156 62.2
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 6.3e-53 211.1 151 64.2
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 7.0e-52 207.6 182 62.1
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 9.1e-52 207.2 153 64.1
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 2.0e-51 206.1 156 65.4
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 2.1e-48 196.1 147 65.3
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 4.7e-48 194.9 157 59.2
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 8.8e-47 190.7 133 69.2
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 2.6e-46 189.1 153 58.2
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.3e-45 184.5 133 64.7
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 2.4e-44 182.6 151 58.3
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 2.2e-42 176.0 151 57.6
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 3.0e-39 165.6 99 79.8
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 2.0e-38 162.9 152 55.3
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 5.4e-36 154.8 108 69.4
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 1.6e-35 153.3 106 69.8
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 5.9e-35 151.4 164 48.2
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 1.0e-34 150.6 92 77.2
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 5.0e-34 148.3 147 51.7
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 1.0e-31 140.6 90 72.2
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 1.1e-28 130.6 77 79.2
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 2.0e-27 126.3 76 80.3
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 2.0e-27 126.3 76 80.3
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.5e-27 125.6 80 72.5
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 4.3e-25 118.6 76 78.9
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 8.9e-23 110.9 86 67.4
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 8.9e-23 110.9 80 67.5
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 7.8e-19 97.8 70 65.7
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 3.0e-18 95.9 67 67.2
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 1.2e-14 84.0 96 45.8
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.7e-13 80.1 54 63.0
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 3.0e-10 69.3 78 48.7
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 8.6e-10 67.8 135 32.6
Hund03009 Selenicereus undatus HOM05D004398 ORTHO05D005268 7.6e-06 54.7 85 34.1


User provided reference genes

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