Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0277591 Rosa chinensis HOM05D009322 ORTHO05D010713 1.5e-65 252.7 129 100.0
RcHm_v2.0_Chr5g0038031 Rosa chinensis HOM05D009322 ORTHO05D010713 2.8e-59 231.9 129 91.5
RcHm_v2.0_Chr5g0031531 Rosa chinensis HOM05D009322 ORTHO05D010713 3.2e-55 218.4 129 86.8
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 8.5e-48 193.7 127 76.4
RcHm_v2.0_Chr1g0333161 Rosa chinensis HOM05D009322 ORTHO05D010713 2.1e-46 189.1 106 91.5
RcHm_v2.0_Chr5g0066061 Rosa chinensis HOM05D009322 ORTHO05D010713 1.4e-45 186.4 109 87.2
RcHm_v2.0_Chr2g0147661 Rosa chinensis HOM05D000003 ORTHO05D010713 2.7e-25 119.0 125 48.0
RcHm_v2.0_Chr7g0229351 Rosa chinensis HOM05D009322 ORTHO05D010713 4.5e-25 118.2 125 48.0
RcHm_v2.0_Chr2g0109541 Rosa chinensis HOM05D009322 ORTHO05D010713 1.3e-24 116.7 126 49.2
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-23 113.2 122 45.9
RcHm_v2.0_Chr7g0203591 Rosa chinensis HOM05D009322 ORTHO05D010713 2.3e-21 105.9 105 49.5
FAN14G2343 Fragaria x ananassa HOM05D009322 ORTHO05D010713 4.0e-21 105.1 125 43.2
RcHm_v2.0_Chr6g0254571 Rosa chinensis HOM05D009322 ORTHO05D010713 1.2e-20 103.6 105 47.6
FAN05G0396 Fragaria x ananassa HOM05D009322 ORTHO05D010713 4.4e-20 101.7 125 41.6
RcHm_v2.0_Chr4g0415961 Rosa chinensis HOM05D000003 ORTHO05D000167 1.7e-19 99.8 96 51.0
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 1.4e-18 96.7 103 48.5
FvH4_4g06602 Fragaria vesca HOM05D009322 ORTHO05D010713 1.6e-17 93.2 125 40.0
FvH4_6g32473 Fragaria vesca HOM05D000003 ORTHO05D010713 2.0e-17 92.8 110 41.8
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 2.7e-17 92.4 124 40.3
FvH4_4g11881 Fragaria vesca HOM05D000003 ORTHO05D000006 5.9e-17 91.3 108 43.5
FvH4_6g18902 Fragaria vesca HOM05D000003 ORTHO05D010713 5.9e-17 91.3 124 40.3
RcHm_v2.0_Chr5g0007231 Rosa chinensis HOM05D009322 ORTHO05D010713 1.9e-15 86.3 96 44.8
FAN28G2522 Fragaria x ananassa HOM05D015403 ORTHO05D010713 3.3e-15 85.5 107 45.8
RcHm_v2.0_Chr7g0217171 Rosa chinensis HOM05D000003 ORTHO05D000167 3.3e-15 85.5 96 47.9
FvH4_6g19251 Fragaria vesca HOM05D000003 ORTHO05D000004 4.3e-15 85.1 119 42.9
RcHm_v2.0_Chr2g0139191 Rosa chinensis HOM05D009322 ORTHO05D010713 5.6e-15 84.7 119 38.7
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 3.6e-14 82.0 111 43.2
FvH4_1g18911 Fragaria vesca HOM05D009322 ORTHO05D010713 6.2e-14 81.3 107 43.9
FvH4_6g27671 Fragaria vesca HOM05D009322 ORTHO05D010713 2.6e-12 75.9 103 37.9
FAN10G0088 Fragaria x ananassa HOM05D000017 ORTHO05D010683 5.8e-12 74.7 89 44.9
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 2.2e-11 72.8 100 41.0
FvH4_4g14101 Fragaria vesca HOM05D000003 ORTHO05D000006 2.9e-11 72.4 66 50.0
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 6.4e-11 71.2 125 33.6
RcHm_v2.0_Chr2g0135511 Rosa chinensis HOM05D008833 ORTHO05D010662 6.4e-11 71.2 109 36.7
FAN23G2244 Fragaria x ananassa HOM05D009322 ORTHO05D010713 1.4e-10 70.1 96 37.5
RcHm_v2.0_Chr2g0142781 Rosa chinensis HOM05D008833 ORTHO05D010662 1.9e-10 69.7 109 35.8
FvH4_3g24370 Fragaria vesca HOM05D009322 ORTHO05D010713 2.4e-10 69.3 81 42.0
FAN14G5309 Fragaria x ananassa HOM05D009322 ORTHO05D010713 5.4e-10 68.2 90 38.9
FvH4_6g33631 Fragaria vesca HOM05D000003 ORTHO05D004145 7.0e-10 67.8 111 36.0
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 1.2e-09 67.0 91 39.6
RcHm_v2.0_Chr4g0410541 Rosa chinensis HOM05D015505 ORTHO05D035409 1.6e-09 66.6 114 36.8
FvH4_1g27452 Fragaria vesca HOM05D009322 ORTHO05D010713 2.0e-09 66.2 73 47.9
FAN07G1994 Fragaria x ananassa HOM05D031349 ORTHO05D010713 2.0e-09 66.2 107 39.3
FvH4_4g14281 Fragaria vesca HOM05D009322 ORTHO05D010713 2.7e-09 65.9 89 39.3
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-09 65.5 125 32.0
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 3.5e-09 65.5 126 28.6
FvH4_3g37001 Fragaria vesca HOM05D000003 ORTHO05D000006 6.0e-09 64.7 106 34.0
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 1.0e-08 63.9 118 34.7
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 1.0e-08 63.9 100 38.0
RcHm_v2.0_Chr5g0046251 Rosa chinensis HOM05D008833 ORTHO05D010662 1.0e-08 63.9 109 31.2
Atru.chr4.85 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-08 63.5 110 36.4
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.3e-08 63.5 91 40.7
QL07p036969 Quercus lobata HOM05D000003 ORTHO05D000167 1.3e-08 63.5 89 40.4
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.7e-08 63.2 121 33.1
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 2.3e-08 62.8 90 36.7
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-08 62.4 124 34.7
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 3.0e-08 62.4 101 35.6
FAN25G0905 Fragaria x ananassa HOM05D012422 ORTHO05D012874 3.0e-08 62.4 81 37.0
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 3.0e-08 62.4 89 40.4
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 3.9e-08 62.0 97 38.1
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 3.9e-08 62.0 97 38.1
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 3.9e-08 62.0 97 38.1
FvH4_1g18401 Fragaria vesca HOM05D009322 ORTHO05D010713 5.0e-08 61.6 100 39.0
QL10p017193 Quercus lobata HOM05D000003 ORTHO05D000167 5.0e-08 61.6 110 38.2
RcHm_v2.0_Chr5g0044391 Rosa chinensis HOM05D008833 ORTHO05D010662 5.0e-08 61.6 109 31.2
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-08 61.2 125 32.0
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 6.6e-08 61.2 121 32.2
Haze_13874 Corylus avellana HOM05D016406 ORTHO05D000167 6.6e-08 61.2 111 32.4
Haze_19506 Corylus avellana HOM05D000003 ORTHO05D000167 6.6e-08 61.2 121 33.1
Atru.chr8.277 Acer truncatum HOM05D000003 ORTHO05D000167 8.6e-08 60.8 129 32.6
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-07 60.5 109 34.9
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.5 90 36.7
Haze_17656 Corylus avellana HOM05D000003 ORTHO05D000167 1.1e-07 60.5 114 34.2
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-07 60.5 90 35.6
Atru.chr4.1036 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-07 60.1 125 31.2
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-07 60.1 90 36.7
RcHm_v2.0_Chr6g0276431 Rosa chinensis HOM05D008833 ORTHO05D010662 1.5e-07 60.1 109 29.4
CANSAT01G1560 Cannabis sativa HOM05D000003 ORTHO05D000167 3.3e-07 58.9 119 31.1
Prupe.1G179300 Prunus persica HOM05D000003 ORTHO05D006737 3.3e-07 58.9 109 30.3
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 4.3e-07 58.5 117 33.3
Atru.chr9.909 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-07 58.5 121 29.8
Haze_13587 Corylus avellana HOM05D032658 ORTHO05D000167 4.3e-07 58.5 107 36.4
FAN05G5833 Fragaria x ananassa HOM05D015403 ORTHO05D010713 4.3e-07 58.5 76 44.7
FAN06G2591 Fragaria x ananassa HOM05D000109 ORTHO05D000210 4.3e-07 58.5 52 51.9
RcHm_v2.0_Chr7g0226691 Rosa chinensis HOM05D009383 ORTHO05D011656 4.3e-07 58.5 111 33.3
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-07 58.2 115 35.7
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-07 58.2 117 30.8
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-07 58.2 123 37.4
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-07 58.2 115 33.9
RcHm_v2.0_Chr5g0047711 Rosa chinensis HOM05D008833 ORTHO05D000167 5.6e-07 58.2 109 29.4
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 5.6e-07 58.2 81 39.5
Atru.chr13.2597 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-07 57.8 125 32.8
CANSAT80G2272 Cannabis sativa HOM05D000003 ORTHO05D000004 7.3e-07 57.8 101 32.7
FAN07G2503 Fragaria x ananassa HOM05D008430 ORTHO05D010713 7.3e-07 57.8 64 45.3
FAN17G0585 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.3e-07 57.8 75 37.3
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 7.3e-07 57.8 118 28.8
QL05p038991 Quercus lobata HOM05D000003 ORTHO05D000167 7.3e-07 57.8 101 30.7
QL11p056556 Quercus lobata HOM05D000003 ORTHO05D000167 7.3e-07 57.8 126 31.0
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 9.5e-07 57.4 126 27.8
Atru.chr3.1273 Acer truncatum HOM05D000003 ORTHO05D000167 9.5e-07 57.4 110 31.8
FAN18G2217 Fragaria x ananassa HOM05D000007 ORTHO05D022567 9.5e-07 57.4 82 37.8
RcHm_v2.0_Chr5g0005651 Rosa chinensis HOM05D014406 ORTHO05D015627 9.5e-07 57.4 59 47.5
CANSAT56G2281 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-06 57.0 110 30.0
FAN03G2590 Fragaria x ananassa HOM05D009322 ORTHO05D010713 1.2e-06 57.0 66 45.5
RcHm_v2.0_Chr3g0478611 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-06 57.0 112 29.5
Atru.chr1.805 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-06 56.6 124 33.1
Atru.chr13.1861 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-06 56.6 118 33.1
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.6e-06 56.6 101 31.7
Prupe.6G203400 Prunus persica HOM05D000003 ORTHO05D000167 1.6e-06 56.6 109 29.4
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 1.6e-06 56.6 100 34.0
RcHm_v2.0_Chr4g0389021 Rosa chinensis HOM05D000003 ORTHO05D000167 1.6e-06 56.6 125 26.4
Atru.chr6.1438 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-06 56.2 100 34.0
CANSAT54G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.2 109 29.4
FvH4_5g18832 Fragaria vesca HOM05D000003 ORTHO05D000006 2.1e-06 56.2 50 52.0
FvH4_6g23332 Fragaria vesca HOM05D000003 ORTHO05D000006 2.1e-06 56.2 89 39.3
FAN22G2408 Fragaria x ananassa HOM05D014406 ORTHO05D010713 2.1e-06 56.2 54 46.3
RcHm_v2.0_Chr1g0320221 Rosa chinensis HOM05D008097 ORTHO05D045380 2.1e-06 56.2 100 32.0
TAR256G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000167 2.1e-06 56.2 95 33.7
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 2.8e-06 55.8 102 35.3
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-06 55.8 109 32.1
Duzib170G1141 Durio zibethinus HOM05D000003 ORTHO05D000167 2.8e-06 55.8 109 28.4
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.8e-06 55.8 100 32.0
Atru.chr8.67 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-06 55.5 115 34.8
Atru.chr8.695 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-06 55.5 114 34.2
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-06 55.5 110 30.0
QL04p064882 Quercus lobata HOM05D000003 ORTHO05D000167 3.6e-06 55.5 104 27.9
QL93p0215_0031 Quercus lobata HOM05D000003 ORTHO05D000167 3.6e-06 55.5 104 27.9
EL10As6g23653 Beta vulgaris HOM05D000003 ORTHO05D000167 4.7e-06 55.1 100 34.0
CANSAT11G1907 Cannabis sativa HOM05D000003 ORTHO05D000167 4.7e-06 55.1 121 28.1
Haze_11698 Corylus avellana HOM05D009031 ORTHO05D000167 4.7e-06 55.1 123 28.5
Haze_23165 Corylus avellana HOM05D000003 ORTHO05D000167 4.7e-06 55.1 115 30.4
TWI32G0681 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.7e-06 55.1 101 31.7
TWI53G0004 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.7e-06 55.1 101 31.7
Atru.chr1.3769 Acer truncatum HOM05D000003 ORTHO05D000167 6.2e-06 54.7 119 30.3
Atru.chr10.1383 Acer truncatum HOM05D000003 ORTHO05D000167 6.2e-06 54.7 125 30.4
Atru.chr4.2041 Acer truncatum HOM05D000003 ORTHO05D000167 6.2e-06 54.7 120 33.3
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 6.2e-06 54.7 122 28.7
CANSAT64G1247 Cannabis sativa HOM05D000003 ORTHO05D000167 6.2e-06 54.7 123 30.1
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-06 54.7 115 29.6
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.2e-06 54.7 90 34.4
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.2e-06 54.7 90 34.4
QL03p066006 Quercus lobata HOM05D001020 ORTHO05D014173 6.2e-06 54.7 104 28.8
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 6.2e-06 54.7 106 30.2
Atru.chr1.2954 Acer truncatum HOM05D000003 ORTHO05D000167 8.1e-06 54.3 114 32.5
Atru.chr9.812 Acer truncatum HOM05D000003 ORTHO05D000167 8.1e-06 54.3 115 29.6
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 8.1e-06 54.3 85 37.6


User provided reference genes

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