Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0277001 Rosa chinensis HOM05D001974 ORTHO05D036416 3.6e-57 224.6 102 100.0
RcHm_v2.0_Chr3g0486551 Rosa chinensis HOM05D001974 ORTHO05D001995 1.4e-29 132.9 71 83.1
FAN26G2034 Fragaria x ananassa HOM05D001974 ORTHO05D001995 2.9e-27 125.2 79 72.2
FAN28G2208 Fragaria x ananassa HOM05D001974 ORTHO05D001995 3.8e-27 124.8 79 72.2
FAN10G4124 Fragaria x ananassa HOM05D001974 ORTHO05D001995 6.5e-27 124.0 79 70.9
FvH4_1g26490 Fragaria vesca HOM05D001974 ORTHO05D001995 4.2e-26 121.3 71 78.9
FAN19G0107 Fragaria x ananassa HOM05D001974 ORTHO05D001995 7.2e-26 120.6 71 77.5
Haze_05115 Corylus avellana HOM05D001974 ORTHO05D001995 3.7e-22 108.2 79 58.2
MD17G1281200 Malus domestica HOM05D001974 ORTHO05D001995 6.3e-22 107.5 79 58.2
Cfa004877 Carpinus fangiana HOM05D001974 ORTHO05D001995 8.3e-22 107.1 79 57.0
COL.COLO4_23160 Corchorus olitorius HOM05D001974 ORTHO05D001995 1.4e-21 106.3 79 62.0
QL12p034323 Quercus lobata HOM05D001974 ORTHO05D001995 1.4e-21 106.3 79 57.0
Prupe.3G004400 Prunus persica HOM05D001974 ORTHO05D001995 2.4e-21 105.5 79 59.5
Ciclev10019102m.g Citrus clementina HOM05D001974 ORTHO05D001995 4.1e-21 104.8 86 58.1
TWI59G0571 Tripterygium wilfordii HOM05D001974 ORTHO05D001995 5.4e-21 104.4 79 59.5
Rhsim13G0001000 Rhododendron simsii HOM05D001974 ORTHO05D001995 1.6e-20 102.8 88 51.1
CSS0014853 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 2.0e-20 102.4 88 53.4
CSS0034750 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 2.0e-20 102.4 88 53.4
COL.COLO4_23159 Corchorus olitorius HOM05D001974 ORTHO05D001995 2.7e-20 102.1 70 67.1
Lalb_Chr10g0095771 Lupinus albus HOM05D001974 ORTHO05D001995 2.7e-20 102.1 80 57.5
Thecc.01G322300 Theobroma cacao HOM05D001974 ORTHO05D001995 2.7e-20 102.1 71 63.4
Lj2C1212G6 Lonicera japonica HOM05D001974 ORTHO05D001995 3.5e-20 101.7 70 65.7
Lj2g0018756 Lotus japonicus HOM05D001974 ORTHO05D001995 4.5e-20 101.3 79 55.7
Sabra02G0166000 Salix brachista HOM05D001974 ORTHO05D001995 7.8e-20 100.5 71 64.8
THA.LOC104801322 Tarenaya hassleriana HOM05D001974 ORTHO05D001995 7.8e-20 100.5 70 64.3
Actinidia06389 Actinidia chinensis HOM05D001974 ORTHO05D001995 1.0e-19 100.1 87 51.7
CSS0004499 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 1.3e-19 99.8 70 62.9
Carub.0006s3537 Capsella rubella HOM05D001974 ORTHO05D001995 1.7e-19 99.4 74 62.2
C03p38400 Brassica napus HOM05D001974 ORTHO05D001995 2.3e-19 99.0 77 58.4
Thhalv10029281m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 2.3e-19 99.0 71 63.4
PGR083G1801 Punica granatum HOM05D001974 ORTHO05D001995 2.3e-19 99.0 73 64.4
AL6G51430 Arabidopsis lyrata HOM05D001974 ORTHO05D001995 5.0e-19 97.8 71 62.0
AT4G01870 Arabidopsis thaliana HOM05D001974 ORTHO05D001995 6.6e-19 97.4 70 62.9
BcaB01g02384 Brassica carinata HOM05D001974 ORTHO05D001995 6.6e-19 97.4 71 62.0
BcaC01g06800 Brassica carinata HOM05D001974 ORTHO05D001995 6.6e-19 97.4 85 52.9
C03p38440 Brassica napus HOM05D001974 ORTHO05D001995 6.6e-19 97.4 85 52.9
BolC3t16118H Brassica oleracea HOM05D001974 ORTHO05D001995 6.6e-19 97.4 85 52.9
CiPaw.07G123300 Carya illinoinensis HOM05D001974 ORTHO05D001995 1.1e-18 96.7 70 61.4
Ca_12551_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 1.1e-18 96.7 88 53.4
ECA247G0945 Erigeron canadensis HOM05D001974 ORTHO05D001995 1.1e-18 96.7 86 51.2
CARHR249830 Cardamine hirsuta HOM05D001974 ORTHO05D001995 1.5e-18 96.3 71 60.6
VMungo1215G1833 Vigna mungo HOM05D001974 ORTHO05D001995 1.5e-18 96.3 80 53.8
HanXRQChr15g0464331 Helianthus annuus HOM05D001974 ORTHO05D001995 1.9e-18 95.9 86 51.2
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 2.5e-18 95.5 71 60.6
HanXRQChr09g0270411 Helianthus annuus HOM05D001974 ORTHO05D001995 2.5e-18 95.5 86 50.0
A03p31450 Brassica napus HOM05D001974 ORTHO05D001995 3.3e-18 95.1 85 50.6
BraA03t12326Z Brassica rapa HOM05D001974 ORTHO05D001995 3.3e-18 95.1 85 50.6
Eucgr.H00884 Eucalyptus grandis HOM05D001974 ORTHO05D001995 3.3e-18 95.1 88 53.4
MBI15_g33465_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 3.3e-18 95.1 84 50.0
MSTRG.18067 Avicennia marina HOM05D001974 ORTHO05D001995 5.6e-18 94.4 79 54.4
Glyma.07G168900 Glycine max HOM05D001974 ORTHO05D001995 5.6e-18 94.4 73 60.3
HanXRQChr12g0365851 Helianthus annuus HOM05D001974 ORTHO05D001995 5.6e-18 94.4 70 60.0
Sp6g01710 Schrenkiella parvula HOM05D001974 ORTHO05D001995 5.6e-18 94.4 71 60.6
AUR62011735 Chenopodium quinoa HOM05D001974 ORTHO05D001995 7.3e-18 94.0 75 58.7
Gohir.A07G130600 Gossypium hirsutum HOM05D001974 ORTHO05D001995 7.3e-18 94.0 79 51.9
Gorai.001G146700 Gossypium raimondii HOM05D001974 ORTHO05D001995 7.3e-18 94.0 79 51.9
MBI04_g36327_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 7.3e-18 94.0 71 59.2
Duzib138G0137 Durio zibethinus HOM05D001974 ORTHO05D001995 9.5e-18 93.6 71 60.6
Sopen06g004100 Solanum pennellii HOM05D001974 ORTHO05D001995 1.2e-17 93.2 70 64.3
Cc07_g15100 Coffea canephora HOM05D001974 ORTHO05D001995 2.1e-17 92.4 73 56.2
Eucgr.L00886 Eucalyptus grandis HOM05D001974 ORTHO05D001995 2.8e-17 92.0 88 53.4
Lsat_1_v5_gn_9_7261 Lactuca sativa HOM05D001974 ORTHO05D001995 3.6e-17 91.7 86 47.7
Nitab4.5_0003324g0120 Nicotiana tabacum HOM05D001974 ORTHO05D001995 3.6e-17 91.7 70 61.4
DCAR_002929 Daucus carota HOM05D001974 ORTHO05D001995 4.7e-17 91.3 79 53.2
Gohir.D07G135000 Gossypium hirsutum HOM05D001974 ORTHO05D001995 4.7e-17 91.3 79 50.6
PGSC0003DMG400034369 Solanum tuberosum HOM05D001974 ORTHO05D001995 4.7e-17 91.3 70 61.4
Peaxi162Scf00058g00206 Petunia axillaris HOM05D001974 ORTHO05D001995 6.1e-17 90.9 71 59.2
Lsat_1_v5_gn_1_59561 Lactuca sativa HOM05D001974 ORTHO05D001995 8.0e-17 90.5 70 58.6
TAR636G2583 Trochodendron aralioides HOM05D001974 ORTHO05D001995 8.0e-17 90.5 85 48.2
CAN.G1280.43 Capsicum annuum HOM05D001974 ORTHO05D001995 1.0e-16 90.1 70 60.0
Phvul.003G019700 Phaseolus vulgaris HOM05D001974 ORTHO05D001995 1.0e-16 90.1 80 52.5
Sed0012789 Sechium edule HOM05D001974 ORTHO05D001995 1.0e-16 90.1 70 58.6
Medtr1g032010 Medicago truncatula HOM05D001974 ORTHO05D001995 1.4e-16 89.7 73 57.5
Medtr1g032340 Medicago truncatula HOM05D001974 ORTHO05D001995 1.4e-16 89.7 73 57.5
Migut.D00029 Erythranthe guttata HOM05D001974 ORTHO05D001995 1.8e-16 89.4 79 51.9
Nn3g21869 Nelumbo nucifera HOM05D001974 ORTHO05D001995 1.8e-16 89.4 71 53.5
Eucgr.L00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 2.3e-16 89.0 91 49.5
SalBow6G6290 Salvia bowleyana HOM05D001974 ORTHO05D001995 2.3e-16 89.0 71 57.7
vmacro02371 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 2.3e-16 89.0 88 46.6
ClCG09G004670 Citrullus lanatus HOM05D001974 ORTHO05D001995 3.0e-16 88.6 70 60.0
SalBow6G3361 Salvia bowleyana HOM05D001974 ORTHO05D001995 5.2e-16 87.8 79 51.9
Lj2g0019143 Lotus japonicus HOM05D001974 ORTHO05D001995 8.9e-16 87.0 73 56.2
Nitab4.5_0000363g0070 Nicotiana tabacum HOM05D001974 ORTHO05D001995 8.9e-16 87.0 70 60.0
CiPaw.07G123200 Carya illinoinensis HOM05D001974 ORTHO05D001995 1.2e-15 86.7 71 56.3
Manes.01G233000 Manihot esculenta HOM05D001974 ORTHO05D001995 1.2e-15 86.7 71 56.3
Solyc06g008620.1 Solanum lycopersicum HOM05D001974 ORTHO05D001995 1.5e-15 86.3 85 50.6
Ah.11g045770 Amaranthus hybridus HOM05D001974 ORTHO05D001995 2.0e-15 85.9 92 44.6
SHI23995 Sapria himalayana HOM05D001974 ORTHO05D001995 2.0e-15 85.9 70 61.4
MELO3C023609.2 Cucumis melo HOM05D001974 ORTHO05D001995 2.6e-15 85.5 70 57.1
Psat6g045760 Pisum sativum HOM05D001974 ORTHO05D001995 4.4e-15 84.7 72 56.9
unitig_578.g16639 Utricularia gibba HOM05D001974 ORTHO05D001995 4.4e-15 84.7 79 48.1
Medtr1g032300 Medicago truncatula HOM05D001974 ORTHO05D001995 5.8e-15 84.3 81 50.6
ATR0796G130 Amborella trichopoda HOM05D001974 ORTHO05D001995 7.5e-15 84.0 87 44.8
Sopen06g003390 Solanum pennellii HOM05D001974 ORTHO05D001995 9.8e-15 83.6 85 49.4
CAN.G1449.1 Capsicum annuum HOM05D001974 ORTHO05D001995 1.7e-14 82.8 71 57.7
Cpa.g.sc543.1 Carica papaya HOM05D001974 ORTHO05D001995 2.2e-14 82.4 52 67.3
MBI19_g32710_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 4.9e-14 81.3 83 45.8
EL10As5g23581 Beta vulgaris HOM05D001974 ORTHO05D001995 8.3e-14 80.5 97 43.3
CsaV3_7G030440 Cucumis sativus L. HOM05D001974 ORTHO05D001995 1.4e-13 79.7 70 55.7
PGSC0003DMG400005339 Solanum tuberosum HOM05D001974 ORTHO05D001995 1.4e-13 79.7 85 48.2
Zm00001eb328760 Zea mays HOM05D001974 ORTHO05D001995 1.8e-13 79.3 71 50.7
Sc23g0004580 Simmondsia chinensis HOM05D001974 ORTHO05D001995 3.2e-13 78.6 88 46.6
Aqoxy2G02566 Aquilegia oxysepala HOM05D001974 ORTHO05D001995 7.0e-13 77.4 79 49.4
Ca_12550_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 7.0e-13 77.4 73 49.3
Hma1.2p1_0804F.1_g220940 Hydrangea macrophylla HOM05D001974 ORTHO05D036416 1.2e-12 76.6 53 62.3
Hma1.2p1_1807F.1_g303405 Hydrangea macrophylla HOM05D001974 ORTHO05D036416 1.2e-12 76.6 53 62.3
Os07g0638100 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 3.5e-12 75.1 79 43.0
SGA_v2.0_scaffold80G25694 Striga asiatica HOM05D001974 ORTHO05D001995 3.5e-12 75.1 71 52.1
AUR62024568 Chenopodium quinoa HOM05D001974 ORTHO05D001995 1.1e-10 70.1 49 65.3
PSO675G9146 Papaver somniferum HOM05D001974 ORTHO05D001995 1.5e-10 69.7 71 45.1
PSO017G0481 Papaver somniferum HOM05D001974 ORTHO05D001995 3.3e-10 68.6 85 37.6
ATR0796G288 Amborella trichopoda HOM05D001974 ORTHO05D001995 6.2e-09 64.3 69 40.6
SEGI_01346 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 4.4e-07 58.2 69 44.9
Eucgr.H00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 7.5e-07 57.4 57 47.4
SEGI_38177 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 2.2e-06 55.8 70 44.3
Thhalv10029172m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 4.9e-06 54.7 42 59.5
SMO269G0006 Selaginella moellendorffii HOM05D001974 ORTHO05D001995 4.9e-06 54.7 80 35.0


User provided reference genes

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