Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0276991 Rosa chinensis HOM05D001974 ORTHO05D001995 1.2e-98 363.2 185 100.0
RcHm_v2.0_Chr2g0147951 Rosa chinensis HOM05D001974 ORTHO05D001995 4.9e-73 278.1 167 87.4
RcHm_v2.0_Chr3g0486551 Rosa chinensis HOM05D001974 ORTHO05D001995 1.6e-31 140.2 100 71.0
FvH4_1g26490 Fragaria vesca HOM05D001974 ORTHO05D001995 4.5e-26 122.1 100 65.0
FAN10G4124 Fragaria x ananassa HOM05D001974 ORTHO05D001995 4.5e-26 122.1 100 65.0
FAN28G2208 Fragaria x ananassa HOM05D001974 ORTHO05D001995 1.3e-25 120.6 100 65.0
FAN26G2034 Fragaria x ananassa HOM05D001974 ORTHO05D001995 1.6e-23 113.6 100 62.0
SGA_v2.0_scaffold80G25694 Striga asiatica HOM05D001974 ORTHO05D001995 2.8e-20 102.8 74 63.5
MD17G1281200 Malus domestica HOM05D001974 ORTHO05D001995 8.2e-20 101.3 76 65.8
Haze_05115 Corylus avellana HOM05D001974 ORTHO05D001995 1.1e-19 100.9 78 62.8
Cc07_g15100 Coffea canephora HOM05D001974 ORTHO05D001995 1.4e-19 100.5 100 54.0
COL.COLO4_23159 Corchorus olitorius HOM05D001974 ORTHO05D001995 1.4e-19 100.5 100 54.0
Prupe.3G004400 Prunus persica HOM05D001974 ORTHO05D001995 1.4e-19 100.5 82 61.0
Cfa004877 Carpinus fangiana HOM05D001974 ORTHO05D001995 4.1e-19 99.0 78 61.5
Rhsim13G0001000 Rhododendron simsii HOM05D001974 ORTHO05D001995 5.3e-19 98.6 75 68.0
COL.COLO4_23160 Corchorus olitorius HOM05D001974 ORTHO05D001995 7.0e-19 98.2 100 53.0
Gohir.A07G130600 Gossypium hirsutum HOM05D001974 ORTHO05D001995 1.6e-18 97.1 78 62.8
SalBow6G3361 Salvia bowleyana HOM05D001974 ORTHO05D001995 1.6e-18 97.1 98 58.2
Duzib138G0137 Durio zibethinus HOM05D001974 ORTHO05D001995 3.5e-18 95.9 100 53.0
Sabra02G0166000 Salix brachista HOM05D001974 ORTHO05D001995 3.5e-18 95.9 102 50.0
DCAR_002929 Daucus carota HOM05D001974 ORTHO05D001995 4.5e-18 95.5 76 61.8
Gorai.001G146700 Gossypium raimondii HOM05D001974 ORTHO05D001995 4.5e-18 95.5 78 61.5
THA.LOC104801322 Tarenaya hassleriana HOM05D001974 ORTHO05D001995 7.7e-18 94.7 75 58.7
vmacro02371 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 7.7e-18 94.7 75 62.7
HanXRQChr09g0270411 Helianthus annuus HOM05D001974 ORTHO05D001995 1.0e-17 94.4 100 52.0
ClCG09G004670 Citrullus lanatus HOM05D001974 ORTHO05D001995 1.3e-17 94.0 94 55.3
Gohir.D07G135000 Gossypium hirsutum HOM05D001974 ORTHO05D001995 1.3e-17 94.0 78 61.5
CiPaw.07G123200 Carya illinoinensis HOM05D001974 ORTHO05D001995 1.7e-17 93.6 74 62.2
Migut.D00029 Erythranthe guttata HOM05D001974 ORTHO05D001995 1.7e-17 93.6 76 64.5
Manes.01G233000 Manihot esculenta HOM05D001974 ORTHO05D001995 2.2e-17 93.2 76 61.8
CiPaw.07G123300 Carya illinoinensis HOM05D001974 ORTHO05D001995 5.0e-17 92.0 92 54.3
Ciclev10019102m.g Citrus clementina HOM05D001974 ORTHO05D001995 5.0e-17 92.0 72 62.5
QL12p034323 Quercus lobata HOM05D001974 ORTHO05D001995 6.5e-17 91.7 76 57.9
Thecc.01G322300 Theobroma cacao HOM05D001974 ORTHO05D001995 8.5e-17 91.3 153 39.9
CsaV3_7G030440 Cucumis sativus L. HOM05D001974 ORTHO05D001995 1.1e-16 90.9 74 60.8
CSS0004499 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 1.5e-16 90.5 98 54.1
TWI59G0571 Tripterygium wilfordii HOM05D001974 ORTHO05D001995 1.5e-16 90.5 76 57.9
HanXRQChr15g0464331 Helianthus annuus HOM05D001974 ORTHO05D001995 2.5e-16 89.7 100 51.0
TAR636G2583 Trochodendron aralioides HOM05D001974 ORTHO05D001995 2.5e-16 89.7 88 52.3
Eucgr.L00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 5.5e-16 88.6 73 58.9
Eucgr.L00886 Eucalyptus grandis HOM05D001974 ORTHO05D001995 5.5e-16 88.6 73 60.3
Glyma.07G168900 Glycine max HOM05D001974 ORTHO05D001995 5.5e-16 88.6 73 57.5
MELO3C023609.2 Cucumis melo HOM05D001974 ORTHO05D001995 7.2e-16 88.2 72 59.7
Medtr1g032300 Medicago truncatula HOM05D001974 ORTHO05D001995 9.4e-16 87.8 92 48.9
Peaxi162Scf00058g00206 Petunia axillaris HOM05D001974 ORTHO05D001995 9.4e-16 87.8 90 52.2
BcaB01g02384 Brassica carinata HOM05D001974 ORTHO05D001995 1.6e-15 87.0 74 59.5
Carub.0006s3537 Capsella rubella HOM05D001974 ORTHO05D001995 2.1e-15 86.7 77 57.1
Eucgr.H00884 Eucalyptus grandis HOM05D001974 ORTHO05D001995 2.1e-15 86.7 73 57.5
Sed0012789 Sechium edule HOM05D001974 ORTHO05D001995 2.1e-15 86.7 73 58.9
Ah.11g045770 Amaranthus hybridus HOM05D001974 ORTHO05D001995 3.6e-15 85.9 93 46.2
Phvul.003G019700 Phaseolus vulgaris HOM05D001974 ORTHO05D001995 3.6e-15 85.9 74 55.4
Lj2C1212G6 Lonicera japonica HOM05D001974 ORTHO05D001995 4.7e-15 85.5 111 43.2
PGR083G1801 Punica granatum HOM05D001974 ORTHO05D001995 4.7e-15 85.5 73 54.8
SalBow6G6290 Salvia bowleyana HOM05D001974 ORTHO05D001995 6.1e-15 85.1 74 56.8
AT4G01870 Arabidopsis thaliana HOM05D001974 ORTHO05D001995 8.0e-15 84.7 77 54.5
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 1.0e-14 84.3 96 50.0
Psat6g045760 Pisum sativum HOM05D001974 ORTHO05D001995 1.0e-14 84.3 75 56.0
ATR0796G130 Amborella trichopoda HOM05D001974 ORTHO05D001995 1.8e-14 83.6 82 54.9
MSTRG.18067 Avicennia marina HOM05D001974 ORTHO05D001995 1.8e-14 83.6 98 50.0
Nn3g21869 Nelumbo nucifera HOM05D001974 ORTHO05D001995 1.8e-14 83.6 106 46.2
Nitab4.5_0003324g0120 Nicotiana tabacum HOM05D001974 ORTHO05D001995 3.0e-14 82.8 90 51.1
PSO017G0481 Papaver somniferum HOM05D001974 ORTHO05D001995 3.0e-14 82.8 92 46.7
PSO675G9146 Papaver somniferum HOM05D001974 ORTHO05D001995 3.0e-14 82.8 99 45.5
MBI15_g33465_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 5.2e-14 82.0 75 53.3
AUR62024568 Chenopodium quinoa HOM05D001974 ORTHO05D001995 8.8e-14 81.3 75 52.0
Os07g0638100 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 8.8e-14 81.3 68 54.4
AUR62011735 Chenopodium quinoa HOM05D001974 ORTHO05D001995 1.2e-13 80.9 89 46.1
BcaC01g06800 Brassica carinata HOM05D001974 ORTHO05D001995 1.5e-13 80.5 74 55.4
C03p38440 Brassica napus HOM05D001974 ORTHO05D001995 1.5e-13 80.5 74 55.4
BolC3t16118H Brassica oleracea HOM05D001974 ORTHO05D001995 1.5e-13 80.5 74 55.4
Sp6g01710 Schrenkiella parvula HOM05D001974 ORTHO05D001995 1.5e-13 80.5 74 52.7
VMungo1215G1833 Vigna mungo HOM05D001974 ORTHO05D001995 2.0e-13 80.1 73 53.4
C03p38400 Brassica napus HOM05D001974 ORTHO05D001995 2.6e-13 79.7 74 55.4
BraA03t12326Z Brassica rapa HOM05D001974 ORTHO05D001995 2.6e-13 79.7 74 54.1
AL6G51430 Arabidopsis lyrata HOM05D001974 ORTHO05D001995 3.4e-13 79.3 77 53.2
Thhalv10029172m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 3.4e-13 79.3 92 48.9
Thhalv10029281m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 3.4e-13 79.3 92 48.9
Dinv08793 Davidia involucrata HOM05D001974 ORTHO05D001995 5.7e-13 78.6 74 52.7
Aqoxy2G02566 Aquilegia oxysepala HOM05D001974 ORTHO05D001995 7.5e-13 78.2 90 46.7
A03p31450 Brassica napus HOM05D001974 ORTHO05D001995 7.5e-13 78.2 74 52.7
CARHR249830 Cardamine hirsuta HOM05D001974 ORTHO05D001995 9.8e-13 77.8 71 52.1
MBI04_g36327_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 9.8e-13 77.8 75 50.7
Nitab4.5_0000363g0070 Nicotiana tabacum HOM05D001974 ORTHO05D001995 9.8e-13 77.8 90 50.0
Zm00001eb328760 Zea mays HOM05D001974 ORTHO05D001995 1.3e-12 77.4 86 47.7
CSS0014853 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 2.2e-12 76.6 103 47.6
CSS0034750 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 2.8e-12 76.3 103 47.6
Ca_12551_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 3.7e-12 75.9 103 46.6
Lj2g0018756 Lotus japonicus HOM05D001974 ORTHO05D001995 3.7e-12 75.9 80 52.5
Lj2g0019143 Lotus japonicus HOM05D001974 ORTHO05D001995 3.7e-12 75.9 104 45.2
Lsat_1_v5_gn_9_7261 Lactuca sativa HOM05D001974 ORTHO05D001995 6.3e-12 75.1 112 42.9
ATR0796G288 Amborella trichopoda HOM05D001974 ORTHO05D001995 1.1e-11 74.3 73 45.2
Lsat_1_v5_gn_1_59561 Lactuca sativa HOM05D001974 ORTHO05D001995 1.1e-11 74.3 113 44.2
Glyma.09G067650 Glycine max HOM05D001974 ORTHO05D001995 1.8e-11 73.6 73 49.3
Ca_12550_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 2.4e-11 73.2 100 44.0
ECA247G0945 Erigeron canadensis HOM05D001974 ORTHO05D001995 4.1e-11 72.4 69 53.6
EL10As5g23581 Beta vulgaris HOM05D001974 ORTHO05D001995 7.0e-11 71.6 84 46.4
unitig_578.g16639 Utricularia gibba HOM05D001974 ORTHO05D001995 1.2e-10 70.9 73 50.7
Medtr1g032010 Medicago truncatula HOM05D001974 ORTHO05D001995 1.6e-10 70.5 74 54.1
Medtr1g032340 Medicago truncatula HOM05D001974 ORTHO05D001995 1.6e-10 70.5 74 54.1
PGSC0003DMG400034369 Solanum tuberosum HOM05D001974 ORTHO05D001995 2.7e-10 69.7 90 47.8
FAN19G0107 Fragaria x ananassa HOM05D001974 ORTHO05D001995 3.5e-10 69.3 51 66.7
MBI19_g32710_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 3.5e-10 69.3 71 47.9
Sopen06g004100 Solanum pennellii HOM05D001974 ORTHO05D001995 1.7e-09 67.0 83 47.0
SEGI_38177 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 2.3e-09 66.6 60 53.3
PGSC0003DMG400005339 Solanum tuberosum HOM05D001974 ORTHO05D001995 1.1e-08 64.3 72 45.8
Carub.0001s2110 Capsella rubella HOM05D001974 ORTHO05D001995 1.2e-07 60.8 62 46.8
Sopen06g003390 Solanum pennellii HOM05D001974 ORTHO05D001995 3.6e-07 59.3 83 43.4
AL1G34830 Arabidopsis lyrata HOM05D001974 ORTHO05D001995 4.7e-07 58.9 62 46.8
Solyc06g008620.1 Solanum lycopersicum HOM05D001974 ORTHO05D001995 4.7e-07 58.9 83 43.4
Eucgr.H00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 6.1e-07 58.5 71 46.5
CAN.G1449.1 Capsicum annuum HOM05D001974 ORTHO05D001995 1.0e-06 57.8 74 41.9
AT1G21670 Arabidopsis thaliana HOM05D001974 ORTHO05D001995 1.4e-06 57.4 62 46.8
Aa31LG7G5650 Aethionema arabicum HOM05D001974 ORTHO05D001995 2.3e-06 56.6 62 45.2
Cfa004875 Carpinus fangiana HOM05D001974 ORTHO05D001995 2.3e-06 56.6 37 62.2
SEGI_01346 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 2.3e-06 56.6 60 46.7
Thhalv10006965m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 3.0e-06 56.2 73 39.7
BcaB07g32162 Brassica carinata HOM05D001974 ORTHO05D001995 4.0e-06 55.8 64 42.2
BcaC05g26085 Brassica carinata HOM05D001974 ORTHO05D001995 4.0e-06 55.8 62 45.2
SMO133G0023 Selaginella moellendorffii HOM05D001974 ORTHO05D001995 6.8e-06 55.1 67 40.3
C05p20640 Brassica napus HOM05D001974 ORTHO05D001995 8.8e-06 54.7 62 45.2
BolC5t30763H Brassica oleracea HOM05D001974 ORTHO05D001995 8.8e-06 54.7 62 45.2


User provided reference genes

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