Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 4.0e-139 498.0 243 100.0
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 6.4e-129 464.2 243 93.0
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 5.1e-110 401.4 245 81.2
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 4.3e-109 398.3 237 84.0
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 8.1e-108 394.0 248 80.6
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 1.1e-101 373.6 248 74.2
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 1.9e-101 372.9 243 77.0
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 2.5e-101 372.5 245 75.5
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 5.6e-101 371.3 211 82.9
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 2.8e-100 369.0 243 74.5
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 4.7e-100 368.2 238 77.3
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 1.1e-99 367.1 243 75.3
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 2.4e-99 365.9 245 75.1
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 2.4e-99 365.9 212 81.6
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 3.1e-99 365.5 197 85.3
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 3.1e-99 365.5 243 76.1
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 5.3e-99 364.8 253 72.3
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 6.9e-99 364.4 247 75.3
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 6.9e-99 364.4 232 76.3
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 9.0e-99 364.0 245 74.3
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 1.2e-98 363.6 216 80.1
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 1.2e-98 363.6 245 75.5
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 1.5e-98 363.2 195 87.7
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 1.5e-98 363.2 195 86.2
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 1.5e-98 363.2 251 73.7
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 2.0e-98 362.8 241 73.0
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 2.0e-98 362.8 240 77.1
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 4.4e-98 361.7 196 84.7
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 4.4e-98 361.7 249 71.9
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 4.4e-98 361.7 236 74.2
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 4.4e-98 361.7 196 86.7
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 7.6e-98 360.9 208 81.2
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 9.9e-98 360.5 242 72.3
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 1.3e-97 360.1 197 85.3
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 1.3e-97 360.1 245 71.8
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 1.7e-97 359.8 230 75.7
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 1.7e-97 359.8 199 85.4
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 1.7e-97 359.8 239 74.5
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 2.2e-97 359.4 214 80.4
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 2.2e-97 359.4 214 80.4
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 2.9e-97 359.0 247 70.4
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 2.9e-97 359.0 249 71.9
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 3.8e-97 358.6 196 83.7
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 6.4e-97 357.8 214 79.4
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 8.4e-97 357.5 196 83.2
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 1.1e-96 357.1 245 72.7
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 1.1e-96 357.1 217 77.9
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 1.4e-96 356.7 214 79.0
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 1.9e-96 356.3 196 85.2
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 1.9e-96 356.3 246 70.7
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 3.2e-96 355.5 195 83.1
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 3.2e-96 355.5 212 80.7
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 5.4e-96 354.8 196 82.7
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 1.2e-95 353.6 239 75.7
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 2.1e-95 352.8 195 82.6
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 2.1e-95 352.8 212 78.8
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 2.1e-95 352.8 196 82.1
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 4.6e-95 351.7 198 83.3
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 3.9e-94 348.6 203 79.3
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 6.6e-94 347.8 199 80.9
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 8.7e-94 347.4 248 70.2
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 1.1e-93 347.1 195 83.1
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 1.5e-93 346.7 216 77.3
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 1.5e-93 346.7 238 72.3
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 1.9e-93 346.3 216 77.8
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 1.9e-93 346.3 196 81.6
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 7.3e-93 344.4 253 68.8
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 2.8e-92 342.4 197 80.2
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 2.8e-92 342.4 211 77.7
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 2.0e-90 336.3 195 80.5
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 5.8e-90 334.7 187 82.9
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 7.6e-90 334.3 212 77.4
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 4.9e-89 331.6 208 77.4
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 4.9e-89 331.6 239 64.9
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 8.4e-89 330.9 242 68.6
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 1.4e-88 330.1 193 78.2
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 6.0e-87 324.7 199 78.4
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 9.6e-85 317.4 236 72.0
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 1.6e-84 316.6 193 76.7
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 2.1e-84 316.2 185 80.5
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 3.7e-84 315.5 210 72.9
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.1e-83 313.9 236 71.2
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 2.0e-82 309.7 218 70.6
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 8.4e-81 304.3 203 69.0
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 1.1e-80 303.9 240 67.1
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 2.5e-80 302.8 203 73.9
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 3.9e-78 295.4 199 72.9
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 2.8e-76 289.3 196 68.4
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 6.2e-76 288.1 192 68.2
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 8.2e-76 287.7 247 61.9
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 2.6e-74 282.7 220 67.3
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 2.5e-72 276.2 206 65.5
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 3.2e-72 275.8 174 69.5
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 3.3e-69 265.8 245 58.4
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 4.8e-68 261.9 199 64.8
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.8e-67 260.0 209 63.6
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 1.0e-65 254.2 189 70.4
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 2.5e-64 249.6 148 78.4
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 4.5e-58 228.8 173 61.3
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 2.7e-55 219.5 137 77.4
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 8.8e-54 214.5 200 55.0
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 2.8e-52 209.5 197 52.8
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 3.0e-46 189.5 200 53.5
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 1.7e-44 183.7 115 74.8
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 1.0e-41 174.5 103 75.7
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.0e-41 174.5 150 53.3
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 1.1e-40 171.0 105 75.2
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 1.3e-25 120.9 175 42.3
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 2.9e-25 119.8 71 81.7
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 3.3e-24 116.3 70 74.3
Dinv25820 Davidia involucrata HOM05D007108 ORTHO05D009128 2.1e-15 87.0 59 69.5


User provided reference genes

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