Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 7.7e-94 347.1 165 100.0
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 8.3e-64 247.3 139 84.9
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 2.4e-63 245.7 139 87.1
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 8.9e-58 227.3 140 81.4
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.7e-56 223.0 140 80.0
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.7e-56 223.0 140 80.0
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.4e-56 221.1 140 80.0
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.9e-55 219.5 140 79.3
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 3.0e-53 212.2 139 74.1
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 8.9e-50 200.7 139 73.4
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.4e-47 193.4 139 71.9
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 9.5e-44 180.6 139 65.5
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.6e-43 179.9 134 66.4
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.1e-42 177.2 143 62.9
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 2.0e-41 172.9 143 62.9
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 2.9e-40 169.1 139 61.9
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.4e-39 166.0 134 60.4
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 4.1e-39 165.2 136 58.8
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 1.6e-38 163.3 132 59.8
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 6.0e-38 161.4 127 64.6
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 1.0e-37 160.6 130 60.0
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-37 160.6 137 59.1
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.7e-37 159.8 136 57.4
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.3e-37 159.5 154 55.2
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.0e-37 159.1 126 63.5
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.0e-37 159.1 126 63.5
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 3.0e-37 159.1 129 61.2
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 6.6e-37 157.9 126 62.7
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 6.6e-37 157.9 126 62.7
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 8.6e-37 157.5 146 54.8
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.1e-36 157.1 137 56.9
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.5e-36 156.8 144 54.9
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.9e-36 156.4 133 57.9
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.9e-36 156.4 133 57.9
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.9e-36 156.4 126 60.3
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.5e-36 156.0 134 61.2
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.5e-36 156.0 133 57.1
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 3.3e-36 155.6 136 57.4
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 3.3e-36 155.6 141 56.0
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 4.3e-36 155.2 137 56.9
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 4.3e-36 155.2 144 54.2
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 5.6e-36 154.8 129 60.5
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 5.6e-36 154.8 141 58.2
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 5.6e-36 154.8 144 54.2
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 7.3e-36 154.5 135 54.8
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 7.3e-36 154.5 133 59.4
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 7.3e-36 154.5 133 60.9
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 9.6e-36 154.1 133 56.4
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 9.6e-36 154.1 131 55.0
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.2e-35 153.7 126 60.3
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 2.1e-35 152.9 141 55.3
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 2.8e-35 152.5 144 54.2
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 2.8e-35 152.5 126 62.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 2.8e-35 152.5 126 61.1
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 3.6e-35 152.1 129 58.1
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 4.7e-35 151.8 125 60.8
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 6.2e-35 151.4 129 57.4
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 6.2e-35 151.4 144 52.1
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 8.1e-35 151.0 126 61.1
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 8.1e-35 151.0 140 55.0
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.1e-34 150.6 131 55.7
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 3.1e-34 149.1 133 57.9
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 4.0e-34 148.7 133 57.9
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 5.2e-34 148.3 130 58.5
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 8.9e-34 147.5 131 56.5
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.5e-33 146.7 143 55.2
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 2.0e-33 146.4 132 56.1
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 3.4e-33 145.6 139 56.1
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 3.4e-33 145.6 129 57.4
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 4.4e-33 145.2 146 51.4
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 5.8e-33 144.8 139 56.8
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.8e-33 144.8 129 58.9
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 5.8e-33 144.8 114 67.5
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 7.6e-33 144.4 126 54.0
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.6e-33 144.4 129 58.1
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.6e-33 144.4 129 58.1
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 7.6e-33 144.4 126 55.6
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 9.9e-33 144.1 129 56.6
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.3e-32 143.7 139 55.4
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.7e-32 143.3 140 52.9
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 8.4e-32 141.0 126 55.6
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 5.4e-31 138.3 131 55.0
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 7.1e-31 137.9 137 55.5
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 1.6e-30 136.7 132 52.3
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 2.1e-30 136.3 133 55.6
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 2.7e-30 136.0 132 54.5
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 4.6e-30 135.2 133 54.9
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 6.0e-30 134.8 134 50.0
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 1.0e-29 134.0 138 52.2
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.7e-29 133.3 141 51.1
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 3.0e-29 132.5 142 54.2
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 5.1e-29 131.7 131 54.2
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.6e-29 131.3 131 51.9
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.1e-28 130.6 135 52.6
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.1e-28 130.6 148 47.3
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 1.5e-28 130.2 129 51.9
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 1.5e-28 130.2 136 52.9
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.5e-28 130.2 131 52.7
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.9e-28 129.8 135 53.3
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 7.3e-28 127.9 127 48.8
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 1.3e-27 127.1 129 51.2
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.6e-27 126.7 133 51.1
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 2.1e-27 126.3 124 51.6
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.8e-27 125.9 139 51.1
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.6e-27 125.6 127 49.6
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 4.8e-27 125.2 113 54.9
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 3.1e-26 122.5 152 48.0
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 5.3e-26 121.7 132 49.2
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 6.9e-26 121.3 58 98.3
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.2e-25 120.6 134 48.5
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 3.4e-25 119.0 135 49.6
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 7.6e-25 117.9 149 46.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.1e-23 114.0 131 48.9
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.4e-23 113.6 118 55.1
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 3.2e-23 112.5 140 45.7
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 9.3e-23 110.9 147 45.6
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.5e-20 103.6 147 40.1
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.5e-17 92.0 127 37.8
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 7.6e-17 91.3 102 48.0
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.9e-16 89.4 134 37.3
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 3.8e-16 89.0 138 40.6
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 4.9e-16 88.6 130 41.5
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.4e-15 87.0 127 36.2
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.7e-14 82.8 127 34.6
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 4.6e-14 82.0 131 40.5
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 3.9e-13 79.0 79 54.4
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.2e-07 59.3 50 60.0
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.1e-06 56.6 93 34.4
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 4.6e-06 55.5 62 51.6


User provided reference genes

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