Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 0.0e+00 1174.8 612 100.0
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 4.2e-312 1073.5 616 90.3
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 8.4e-311 1069.7 616 89.9
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.4e-310 1068.1 613 89.9
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.0e-309 1063.5 616 89.6
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 4.0e-305 1050.8 616 88.8
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 4.6e-285 984.2 629 82.2
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.2e-280 969.5 622 81.4
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 6.9e-273 943.7 626 79.6
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 9.3e-262 906.7 626 75.7
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 1.5e-259 899.4 629 76.0
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 5.7e-259 897.5 629 74.9
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.2e-258 895.6 629 75.5
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.4e-257 892.9 623 75.0
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 8.5e-255 883.6 623 74.8
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.8e-252 875.9 618 73.6
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 6.7e-252 874.0 628 73.9
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.5e-251 872.8 632 74.8
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 2.2e-250 869.0 622 74.1
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 4.8e-250 867.8 622 74.1
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 1.4e-249 866.3 630 73.3
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 5.3e-249 864.4 618 74.1
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 2.0e-248 862.4 643 71.4
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 4.5e-248 861.3 622 72.8
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 1.0e-247 860.1 622 72.3
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.3e-247 859.8 619 73.0
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 2.2e-247 859.0 649 72.6
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 5.0e-247 857.8 633 72.8
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 5.0e-247 857.8 633 72.8
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 3.6e-245 851.7 618 73.1
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.0e-244 850.1 635 71.2
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.4e-244 849.7 618 73.1
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 3.0e-244 848.6 619 71.9
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 7.4e-243 844.0 618 71.7
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 7.4e-243 844.0 618 72.0
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.3e-242 843.2 617 72.4
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.7e-242 842.8 619 71.2
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 4.8e-242 841.3 630 70.5
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 5.3e-241 837.8 617 72.4
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.6e-240 836.3 617 72.3
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.6e-240 836.3 646 68.7
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 4.5e-240 834.7 620 71.5
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.5e-240 834.7 618 70.9
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 5.5e-238 827.8 617 72.0
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.7e-237 825.5 619 72.2
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 6.1e-237 824.3 621 70.4
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 6.1e-237 824.3 619 72.2
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.4e-236 823.2 638 68.7
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 3.0e-236 822.0 635 69.1
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 6.7e-236 820.8 645 68.2
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 7.5e-235 817.4 623 70.3
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 7.5e-235 817.4 621 70.4
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.8e-234 815.5 639 69.0
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 6.3e-234 814.3 628 68.3
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 1.4e-233 813.1 613 70.0
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 3.1e-233 812.0 624 70.5
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 4.5e-232 808.1 620 69.0
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 4.5e-232 808.1 640 68.1
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 2.5e-230 802.4 639 69.2
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 9.4e-230 800.4 631 68.3
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 1.6e-229 799.7 506 78.7
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.1e-229 799.3 628 67.0
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.5e-227 790.8 619 70.0
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 2.2e-226 789.3 772 58.9
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.8e-225 786.2 649 65.9
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.8e-225 786.2 624 67.1
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 7.0e-225 784.3 622 67.5
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 4.5e-224 781.6 633 65.9
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 6.5e-223 777.7 592 69.3
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 1.1e-222 776.9 621 67.5
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 1.0e-220 770.4 623 67.6
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.4e-220 770.0 617 67.7
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 2.3e-220 769.2 612 67.0
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 2.3e-220 769.2 626 67.9
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 3.0e-220 768.8 650 66.8
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 8.8e-220 767.3 627 65.1
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 4.4e-219 765.0 641 65.2
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 5.7e-219 764.6 644 63.7
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 1.3e-218 763.5 612 65.4
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 6.3e-218 761.1 614 65.5
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 8.3e-218 760.8 646 63.6
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.1e-217 760.4 620 67.6
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 1.4e-217 760.0 612 65.0
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 1.4e-217 760.0 633 63.2
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.4e-217 760.0 614 66.0
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.1e-217 758.4 634 64.4
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 9.2e-217 757.3 547 70.9
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.6e-216 756.5 638 65.5
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 2.0e-216 756.1 643 63.5
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.7e-215 753.1 612 64.9
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.7e-215 753.1 612 64.9
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 2.3e-215 752.7 623 66.3
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.9e-214 749.6 619 64.8
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.2e-213 746.9 627 64.1
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 2.1e-213 746.1 627 64.0
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.4e-212 743.4 628 64.5
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 3.0e-212 742.3 625 64.0
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.5e-211 740.0 644 61.8
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 7.5e-211 737.6 488 76.8
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 3.2e-209 732.3 645 61.4
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 5.4e-209 731.5 575 67.8
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 7.0e-209 731.1 619 62.2
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 9.2e-209 730.7 650 61.8
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 9.2e-201 704.1 635 60.8
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.3e-199 700.3 619 61.6
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.5e-198 696.0 455 76.0
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 6.0e-192 674.9 617 60.3
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 1.2e-189 667.2 632 58.7
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.8e-186 655.6 397 80.9
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 4.9e-186 655.2 457 74.0
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 4.9e-186 655.2 625 57.6
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.4e-185 652.9 679 56.1
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 2.6e-179 632.9 625 59.0
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 1.5e-174 617.1 482 64.7
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 5.6e-174 615.1 460 67.8
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 5.3e-172 608.6 452 69.0
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 5.8e-171 605.1 549 60.8
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 5.1e-167 592.0 610 55.1
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 6.7e-167 591.7 634 54.9
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.1e-165 586.6 646 50.9
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 6.9e-164 581.6 377 77.2
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 4.5e-163 578.9 619 54.6
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 5.6e-158 562.0 634 50.9
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.7e-157 559.3 632 50.0
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 2.6e-155 553.1 315 85.4
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 7.9e-152 541.6 673 47.7
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 2.0e-147 526.9 300 84.3
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 3.9e-143 512.7 311 78.1
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 6.3e-133 478.8 311 74.9
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 8.8e-127 458.4 561 47.6
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 4.8e-125 452.6 296 73.3
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.2e-110 404.8 317 68.8
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 1.6e-104 384.4 255 71.0
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 1.6e-104 384.4 255 71.0
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.7e-66 258.1 252 57.9
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.1e-57 228.8 346 38.4
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 5.3e-47 193.4 251 52.2
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 1.8e-39 168.3 174 59.8
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 2.3e-34 151.4 178 50.6
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 2.6e-30 137.9 320 32.5
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.0e-29 136.0 87 72.4
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 6.5e-29 133.3 202 49.5
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.4e-28 132.1 337 34.4
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 5.3e-23 113.6 92 65.2
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.1e-23 112.8 161 49.7
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 7.0e-15 86.7 151 42.4
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 1.0e-13 82.8 106 50.0
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 6.5e-13 80.1 148 43.9
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 6.1e-11 73.6 148 39.9
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.1e-09 69.3 143 39.2
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 5.7e-09 67.0 66 53.0


User provided reference genes

Program Settings