Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.9e-182 642.5 358 100.0
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 7.7e-131 471.1 359 74.4
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.4e-126 455.3 359 72.7
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.0e-122 444.1 346 73.4
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.7e-120 436.0 359 71.0
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.2e-107 394.0 310 73.9
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 5.6e-57 225.7 474 38.4
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 9.3e-52 208.4 458 36.7
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 7.8e-51 205.3 487 35.7
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 3.0e-42 176.8 361 36.3
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 7.4e-41 172.2 346 38.2
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 9.6e-41 171.8 144 60.4
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.1e-40 170.6 196 48.5
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.1e-39 168.3 430 31.4
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 5.3e-39 166.0 193 48.2
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 9.0e-39 165.2 162 54.9
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.5e-38 164.5 144 57.6
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.6e-38 163.7 312 38.5
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 2.9e-37 160.2 191 48.7
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 2.9e-37 160.2 183 46.4
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.9e-37 160.2 167 53.3
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 3.8e-37 159.8 196 43.4
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 3.8e-37 159.8 454 35.0
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 6.4e-37 159.1 278 37.1
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 8.4e-37 158.7 373 34.3
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.1e-36 158.3 171 49.1
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.4e-36 157.1 448 30.1
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 3.2e-36 156.8 358 33.5
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 4.2e-36 156.4 317 37.5
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 4.2e-36 156.4 359 36.5
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 4.2e-36 156.4 358 32.1
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 7.1e-36 155.6 143 54.5
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 9.3e-36 155.2 216 39.4
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.2e-35 154.8 171 49.1
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 2.1e-35 154.1 194 45.4
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 3.5e-35 153.3 261 39.1
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 3.5e-35 153.3 335 38.5
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 7.9e-35 152.1 246 38.2
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 1.0e-34 151.8 170 48.8
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 2.3e-34 150.6 184 45.7
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 2.3e-34 150.6 204 43.1
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 3.0e-34 150.2 173 48.6
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 3.9e-34 149.8 184 45.1
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.9e-34 149.8 236 37.3
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 3.9e-34 149.8 387 32.6
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 6.7e-34 149.1 223 40.8
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 6.7e-34 149.1 192 42.7
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 8.7e-34 148.7 293 36.2
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 1.1e-33 148.3 416 30.8
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.1e-33 148.3 236 36.9
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.1e-33 148.3 364 33.8
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 1.5e-33 147.9 154 51.3
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.9e-33 147.5 195 42.1
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 3.3e-33 146.7 369 31.4
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 5.6e-33 146.0 214 39.7
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 7.4e-33 145.6 360 33.9
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.3e-32 144.8 364 36.8
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.6e-32 144.4 182 47.8
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.6e-32 144.4 209 40.2
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 4.8e-32 142.9 221 35.7
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 8.2e-32 142.1 194 40.7
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.8e-31 141.0 258 40.7
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.8e-31 141.0 201 39.8
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 3.1e-31 140.2 168 45.2
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 5.3e-31 139.4 139 48.2
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 5.3e-31 139.4 357 32.2
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 6.9e-31 139.0 144 46.5
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.2e-30 138.3 261 37.5
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 2.0e-30 137.5 183 45.9
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 2.6e-30 137.1 144 47.2
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 3.4e-30 136.7 378 33.1
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.3e-29 134.8 143 46.2
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.8e-29 133.3 471 29.3
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 3.8e-29 133.3 357 30.0
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 4.9e-29 132.9 142 46.5
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 4.9e-29 132.9 144 45.1
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 8.4e-29 132.1 144 45.1
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.4e-28 131.3 355 32.4
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.9e-28 131.0 348 31.0
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 3.2e-28 130.2 459 32.7
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 4.2e-28 129.8 144 44.4
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 4.2e-28 129.8 207 38.2
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 3.5e-27 126.7 211 37.0
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 7.9e-27 125.6 145 44.8
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.0e-26 125.2 311 31.8
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.0e-26 125.2 223 39.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.3e-26 124.8 131 47.3
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.3e-26 124.8 152 42.8
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.3e-26 124.8 251 35.1
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.8e-26 124.4 144 43.1
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 6.7e-26 122.5 312 31.7
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 1.1e-25 121.7 140 44.3
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.1e-25 121.7 219 34.7
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 2.8e-24 117.1 141 44.0
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 3.7e-24 116.7 207 36.2
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 4.8e-24 116.3 364 30.2
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 6.3e-24 115.9 330 31.2
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 8.2e-24 115.5 280 31.1
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.4e-23 114.8 206 35.9
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 1.8e-23 114.4 383 34.2
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 4.1e-23 113.2 135 42.2
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.5e-22 111.3 408 27.5
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 2.0e-22 110.9 132 42.4
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.4e-22 110.2 199 35.2
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 2.2e-21 107.5 184 38.0
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 2.2e-21 107.5 147 41.5
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.9e-21 107.1 130 40.0
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 6.5e-21 105.9 176 34.1
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 2.5e-20 104.0 180 33.3
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.5e-20 104.0 342 31.3
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 9.4e-20 102.1 199 33.7
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.2e-19 101.7 246 34.6
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 2.7e-19 100.5 220 33.6
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 4.6e-19 99.8 139 38.1
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 1.0e-18 98.6 221 34.4
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 1.8e-18 97.8 220 30.5
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 3.9e-18 96.7 144 37.5
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.5e-17 94.7 288 29.5
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 2.0e-17 94.4 96 54.2
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 4.3e-17 93.2 151 34.4
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.7e-17 92.8 328 29.9
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 5.3e-15 86.3 302 27.2
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 2.0e-14 84.3 135 37.8
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 6.5e-13 79.3 107 42.1
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 3.2e-12 77.0 265 30.9
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.6e-11 74.7 292 28.4
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 5.1e-10 69.7 239 30.1
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 6.7e-10 69.3 97 45.4
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 3.7e-08 63.5 124 33.9
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 4.8e-08 63.2 66 48.5
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 6.3e-08 62.8 105 40.0
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 8.2e-08 62.4 191 30.4
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.8e-07 61.2 163 30.7
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 2.4e-07 60.8 118 29.7
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 4.1e-07 60.1 50 50.0
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 2.0e-06 57.8 194 26.3
Nn1g06075 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.6e-06 57.4 52 51.9


User provided reference genes

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