Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 0.0e+00 3962.1 2108 100.0
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 0.0e+00 1440.6 2735 40.8
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 0.0e+00 1430.6 2706 40.8
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 0.0e+00 1403.7 2724 40.1
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.1e-300 1036.9 1627 46.0
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.8e-227 794.7 1323 43.8
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 4.6e-183 647.1 833 51.7
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 1.2e-109 403.3 2479 27.1
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 4.1e-91 341.7 2590 25.0
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 5.0e-20 105.5 176 45.5
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 1.8e-17 97.1 464 29.1
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 2.2e-15 90.1 152 40.1
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 3.7e-15 89.4 176 41.5
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 4.8e-15 89.0 176 41.5
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.8e-14 87.0 261 36.4
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 1.6e-13 84.0 477 28.9
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 3.5e-13 82.8 427 25.8
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 5.9e-13 82.0 466 27.0
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 7.7e-13 81.6 500 26.6
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 7.7e-13 81.6 178 34.3
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 1.3e-12 80.9 294 29.3
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 3.8e-12 79.3 90 53.3
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 5.0e-12 79.0 698 25.5
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 6.5e-12 78.6 149 43.6
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 8.5e-12 78.2 698 25.9
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 1.1e-11 77.8 162 38.9
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.1e-11 77.8 180 38.3
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 1.5e-11 77.4 87 54.0
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 1.9e-11 77.0 243 32.9
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.9e-11 77.0 143 41.3
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 2.7e-10 73.2 180 36.1
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 3.6e-10 72.8 597 23.3
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 6.1e-10 72.0 202 33.7
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 8.0e-10 71.6 157 38.2
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 3.0e-09 69.7 160 35.0
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 5.2e-09 68.9 91 49.5
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 5.2e-09 68.9 160 37.5
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 6.7e-09 68.6 152 38.2
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 1.2e-08 67.8 221 33.9
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 1.5e-08 67.4 83 48.2
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 2.0e-08 67.0 95 46.3
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 2.6e-08 66.6 83 47.0
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 3.3e-08 66.2 92 46.7
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 5.7e-08 65.5 475 26.9
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 5.7e-08 65.5 273 29.3
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 5.7e-08 65.5 521 25.5
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 7.5e-08 65.1 147 37.4
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 9.7e-08 64.7 477 26.8
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 1.3e-07 64.3 232 31.5
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 1.7e-07 63.9 92 46.7
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 2.8e-07 63.2 120 32.5
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 4.8e-07 62.4 41 73.2
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 6.3e-07 62.0 466 26.8
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 6.3e-07 62.0 137 38.0
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 6.3e-07 62.0 285 30.2
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 8.2e-07 61.6 223 31.4
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 8.2e-07 61.6 41 73.2
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 1.1e-06 61.2 86 41.9
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.1e-06 61.2 44 65.9
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 2.4e-06 60.1 149 39.6
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 2.4e-06 60.1 192 32.3
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 3.1e-06 59.7 433 26.8
Medtr6g043630 Medicago truncatula HOM05D014873 ORTHO05D015681 7.0e-06 58.5 42 64.3
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 9.1e-06 58.2 41 65.9


User provided reference genes

Program Settings