Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 8.3e-132 473.8 251 100.0
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 3.8e-76 288.9 198 79.3
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 7.9e-74 281.2 196 78.6
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 1.6e-34 150.6 240 42.5
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 1.5e-24 117.5 230 38.3
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 5.4e-22 109.0 176 45.5
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 3.3e-19 99.8 191 44.0
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 3.0e-17 93.2 209 37.3
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 5.2e-17 92.4 189 38.6
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 5.2e-17 92.4 173 41.6
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 6.8e-17 92.0 178 43.3
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.4e-16 89.7 172 41.9
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 1.3e-15 87.8 171 41.5
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 8.3e-15 85.1 184 39.7
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.0e-12 78.2 223 33.2
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 1.7e-12 77.4 193 33.7
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 5.6e-11 72.4 236 28.4
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 7.3e-11 72.0 235 28.5
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 9.5e-11 71.6 162 33.3
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 3.6e-10 69.7 152 34.9
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 3.6e-10 69.7 181 34.3
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 8.0e-10 68.6 153 35.3
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 1.0e-09 68.2 124 39.5
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.4e-09 67.8 152 33.6
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 1.8e-09 67.4 81 49.4
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 3.1e-09 66.6 120 40.8
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 3.1e-09 66.6 110 38.2
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 4.0e-09 66.2 134 37.3
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 5.2e-09 65.9 168 31.5
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 5.2e-09 65.9 241 31.5
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 1.5e-08 64.3 250 31.2
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 2.0e-08 63.9 229 27.1
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 2.0e-08 63.9 138 39.9
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.6e-08 63.5 236 28.8
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 3.4e-08 63.2 253 29.2
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 3.4e-08 63.2 146 32.9
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 4.4e-08 62.8 110 37.3
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 7.5e-08 62.0 236 28.4
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.7e-07 60.8 109 34.9
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 1.7e-07 60.8 188 30.9
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 2.2e-07 60.5 86 36.0
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 2.2e-07 60.5 195 29.2
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 2.2e-07 60.5 41 65.9
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.9e-07 60.1 227 30.0
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 2.9e-07 60.1 38 71.1
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 2.9e-07 60.1 196 31.6
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 3.7e-07 59.7 116 33.6
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 3.7e-07 59.7 98 41.8
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 3.7e-07 59.7 38 65.8
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 3.7e-07 59.7 38 71.1
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 4.9e-07 59.3 144 33.3
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 6.4e-07 58.9 38 71.1
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 8.3e-07 58.5 194 29.4
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 8.3e-07 58.5 40 62.5
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 8.3e-07 58.5 149 33.6
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 1.1e-06 58.2 237 30.8
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 1.1e-06 58.2 40 67.5
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.1e-06 58.2 144 33.3
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 1.1e-06 58.2 121 39.7
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 1.1e-06 58.2 121 39.7
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 1.1e-06 58.2 33 78.8
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 1.1e-06 58.2 195 28.2
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 1.1e-06 58.2 47 61.7
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 1.1e-06 58.2 219 34.2
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 1.4e-06 57.8 40 70.0
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 1.9e-06 57.4 36 72.2
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 1.9e-06 57.4 36 72.2
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 1.9e-06 57.4 36 72.2
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 2.4e-06 57.0 164 29.3
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 3.2e-06 56.6 40 65.0
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 4.1e-06 56.2 38 68.4
Medtr6g043630 Medicago truncatula HOM05D014873 ORTHO05D015681 4.1e-06 56.2 38 63.2
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 4.1e-06 56.2 78 39.7
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 5.4e-06 55.8 36 69.4
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 5.4e-06 55.8 36 69.4
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 5.4e-06 55.8 127 36.2
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 7.0e-06 55.5 36 66.7
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 7.0e-06 55.5 162 34.0
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 9.2e-06 55.1 194 29.9


User provided reference genes

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