Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 3.2e-72 275.4 186 100.0
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 2.0e-66 256.1 187 95.7
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 2.8e-60 235.7 174 86.2
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.2e-60 234.2 182 93.4
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 3.4e-58 228.8 191 86.4
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 2.9e-57 225.7 191 88.5
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.5e-56 222.6 195 75.4
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 6.7e-54 214.5 186 64.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.5e-53 213.4 186 64.0
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.0e-53 213.0 143 91.6
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 5.3e-51 204.9 190 64.2
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 7.0e-51 204.5 186 73.7
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.6e-50 202.6 186 64.0
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 4.5e-50 201.8 187 74.9
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.9e-50 201.4 191 62.8
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 7.7e-50 201.1 188 72.9
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 7.7e-50 201.1 186 66.1
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.9e-49 199.1 190 70.0
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 5.0e-49 198.4 188 61.2
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.4e-48 196.8 195 76.4
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.9e-48 196.4 188 73.4
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.2e-48 195.3 203 57.1
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 7.2e-48 194.5 203 56.7
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 9.4e-48 194.1 192 69.8
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.6e-47 193.4 186 75.3
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.1e-47 193.0 195 75.9
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.7e-47 192.6 195 66.2
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.7e-47 192.6 187 65.2
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 8.0e-47 191.0 189 69.8
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 8.0e-47 191.0 197 71.1
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.0e-46 190.7 186 72.0
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.0e-46 190.7 194 74.7
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.0e-46 190.7 186 66.7
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.8e-46 189.9 195 77.4
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.8e-46 189.9 193 64.8
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 3.9e-46 188.7 200 67.5
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.2e-46 188.3 195 71.8
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.2e-46 188.3 188 61.2
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 6.7e-46 188.0 186 73.7
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 8.8e-46 187.6 186 63.4
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.6e-45 186.0 191 70.7
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 4.4e-45 185.3 188 66.5
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.3e-44 183.7 188 63.3
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.7e-44 183.3 195 65.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.7e-44 183.3 187 56.7
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 2.2e-44 183.0 193 61.1
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.2e-44 183.0 188 66.5
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.2e-44 183.0 188 59.0
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 3.7e-44 182.2 187 57.8
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 4.8e-44 181.8 186 61.3
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 4.8e-44 181.8 194 54.6
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 6.3e-44 181.4 188 58.5
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 6.3e-44 181.4 200 55.0
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 8.2e-44 181.0 188 67.0
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.1e-43 180.6 193 74.1
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.1e-43 180.6 188 61.7
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.1e-43 180.6 189 65.6
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.4e-43 180.3 190 65.8
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.8e-43 179.9 193 73.1
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.8e-43 179.9 188 66.5
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 2.4e-43 179.5 187 59.9
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.4e-43 179.5 188 65.4
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.1e-43 179.1 188 72.3
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 7.0e-43 177.9 141 74.5
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 7.0e-43 177.9 142 76.1
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 9.1e-43 177.6 188 62.8
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 9.1e-43 177.6 186 68.3
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 9.1e-43 177.6 190 63.2
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.2e-42 177.2 191 66.0
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.2e-42 177.2 189 62.4
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.6e-42 176.8 189 65.1
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 2.0e-42 176.4 186 66.7
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.6e-42 176.0 191 67.0
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.6e-42 176.0 186 69.4
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.6e-42 176.0 189 65.1
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 3.5e-42 175.6 140 77.9
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 4.5e-42 175.3 204 53.9
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 5.9e-42 174.9 188 61.7
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.7e-41 173.3 188 65.4
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.7e-41 173.3 189 67.7
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.7e-41 173.3 197 70.6
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 2.2e-41 172.9 193 54.4
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.2e-41 172.9 193 61.7
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.2e-41 172.9 187 65.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.9e-41 172.6 186 66.7
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 3.8e-41 172.2 186 66.7
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 5.0e-41 171.8 188 71.3
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 8.5e-41 171.0 186 65.6
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 8.5e-41 171.0 186 65.6
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 8.5e-41 171.0 187 69.5
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.5e-40 170.2 187 71.7
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.9e-40 169.9 186 61.3
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.9e-40 169.9 186 62.9
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.5e-40 169.5 187 67.9
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.5e-40 169.5 188 64.9
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 5.5e-40 168.3 186 68.8
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 5.5e-40 168.3 153 73.9
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 9.4e-40 167.5 186 64.0
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.2e-39 167.2 194 56.7
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.7e-39 166.0 186 59.1
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 3.6e-39 165.6 186 64.5
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 3.6e-39 165.6 181 58.6
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 4.7e-39 165.2 85 94.1
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 6.1e-39 164.9 186 65.6
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 6.1e-39 164.9 186 62.4
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 6.1e-39 164.9 186 58.6
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.4e-38 163.7 186 61.8
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.4e-38 163.7 140 70.0
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.3e-38 162.9 186 58.6
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 4.0e-38 162.2 187 62.0
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 4.0e-38 162.2 139 68.3
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 5.2e-38 161.8 186 58.1
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.7e-38 161.4 100 83.0
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.0e-37 159.8 152 62.5
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 3.3e-37 159.1 192 59.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 5.7e-37 158.3 96 81.2
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 3.1e-35 152.5 189 53.4
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 3.1e-35 152.5 171 70.2
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 5.3e-35 151.8 167 52.7
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.0e-34 149.8 152 63.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 2.0e-34 149.8 148 58.1
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 3.5e-34 149.1 206 52.4
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.0e-33 147.5 128 71.1
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.7e-33 146.7 220 56.4
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 6.8e-30 134.8 75 88.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.0e-29 133.3 70 90.0
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 3.7e-28 129.0 69 84.1
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 8.6e-25 117.9 151 60.3
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.8e-23 112.8 112 71.4
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 3.6e-23 112.5 82 64.6
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 2.3e-22 109.8 154 59.1
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 4.0e-22 109.0 102 55.9
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 5.7e-21 105.1 63 79.4
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 7.5e-21 104.8 170 53.5
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.3e-20 104.0 68 77.9
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.7e-20 103.6 95 53.7
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 2.8e-20 102.8 113 64.6
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.4e-19 100.5 80 60.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 2.7e-18 96.3 82 58.5
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.3e-17 94.0 80 55.0
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 5.6e-16 88.6 144 52.8
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.1e-15 86.7 52 75.0
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 7.8e-10 68.2 64 54.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.8e-07 59.7 39 61.5
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 6.2e-07 58.5 108 50.0


User provided reference genes

Program Settings