Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 2315.8 1182 100.0
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 2209.9 1182 95.3
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 2190.6 1220 92.3
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 2186.0 1220 92.1
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 2181.8 1216 92.3
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 2179.8 1220 92.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 2133.6 1182 91.9
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 2100.5 1182 90.4
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 2067.4 1182 89.3
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1998.4 1182 86.3
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1988.4 1181 85.7
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1988.0 1181 85.7
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1986.5 1182 85.9
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1969.5 1183 85.2
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1943.3 1182 84.1
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1935.2 1180 84.7
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1929.1 1179 83.9
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1926.4 1181 84.1
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1922.1 1183 83.7
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1902.9 1182 82.7
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1889.8 1183 82.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1889.8 1234 79.6
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1889.4 1183 82.1
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1887.5 1183 82.5
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1884.0 1183 82.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1879.0 1179 81.8
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1878.6 1183 81.7
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1877.8 1182 81.6
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1871.7 1237 79.1
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1869.7 1182 80.9
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1868.6 1218 79.6
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1867.0 1218 79.7
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1864.0 1198 81.1
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1862.4 1184 81.0
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1858.2 1183 80.6
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1857.8 1183 81.4
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1856.6 1181 81.9
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1855.1 1196 80.7
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1850.1 1183 81.6
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1849.3 1183 81.3
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1843.2 1183 81.1
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1840.5 1182 80.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1839.7 1182 79.8
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1826.2 1181 80.0
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1825.4 1179 80.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1824.3 1183 79.8
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1817.7 1184 79.3
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1817.0 1178 79.9
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1816.6 1222 78.6
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1816.6 1182 79.4
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1805.4 1215 77.6
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1801.9 1182 78.7
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1801.6 1219 78.1
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1800.8 1183 78.4
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1796.6 1183 78.3
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1794.2 1241 75.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1792.7 1182 78.7
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1791.2 1187 78.6
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1788.5 1185 78.0
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1786.5 1187 77.4
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1781.9 1181 78.0
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1775.8 1183 77.7
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1774.2 1182 76.9
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1773.1 1182 76.8
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1769.6 1169 77.7
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1766.5 1183 78.3
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1766.1 1110 82.0
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1765.7 1183 77.2
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1763.4 1180 76.9
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1763.0 1182 77.3
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1761.9 1187 76.8
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1755.7 1182 76.9
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1182 77.0
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1752.6 1184 76.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1751.1 1181 76.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1748.8 1213 75.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1746.5 1183 76.6
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1744.6 1239 73.9
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1739.9 1188 75.3
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1738.8 1182 76.1
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1737.6 1183 76.8
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1183 76.5
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1182 77.5
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1733.8 1184 76.4
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1730.3 1183 76.5
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1726.8 1180 76.2
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1726.1 1190 76.1
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1724.5 1187 76.6
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1723.8 1188 76.2
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1186 74.8
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1722.6 1221 74.7
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1721.8 1160 77.4
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1718.4 1187 74.9
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1716.8 1246 72.7
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1716.0 1187 74.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1715.7 1183 76.2
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1709.1 1193 74.6
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1708.3 1187 74.6
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1706.4 1183 75.5
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1705.6 1201 74.6
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1703.3 1181 75.0
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1691.0 1184 75.5
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1689.1 1186 75.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1083 80.7
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1679.8 1188 74.7
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1678.3 1198 74.5
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1677.1 1188 74.7
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1676.0 1188 73.6
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1669.4 1196 74.4
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1657.5 1185 74.7
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1629.4 1215 71.2
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1185 70.9
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1610.5 1186 71.0
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1608.2 1157 72.5
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1598.6 1194 70.0
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1562.7 957 82.9
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1558.5 1182 69.0
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1557.0 1124 73.4
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1553.5 1188 68.9
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1539.6 957 82.3
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1506.1 1186 68.5
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1459.5 1044 75.4
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1457.2 1072 72.5
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1412.5 980 75.6
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1378.6 956 75.7
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1325.5 969 73.2
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1300.0 989 71.6
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1275.4 898 73.9
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1275.0 1187 60.4
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1270.0 980 70.7
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1239.9 824 78.4
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1185.6 818 76.5
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1171.4 822 75.5
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1158.7 817 75.5
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 0.0e+00 1083.6 733 78.0
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.6e-311 1073.2 1180 54.8
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 3.2e-290 1002.3 1185 48.6
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.8e-285 986.5 1202 47.3
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 4.0e-285 985.3 540 90.6
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 8.9e-269 931.0 613 79.8
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.6e-254 883.6 727 67.0
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.4e-197 694.5 432 81.2
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.8e-175 619.4 360 85.0
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 6.0e-148 529.6 910 40.5
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 3.9e-147 526.9 307 84.0
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 2.6e-135 487.6 307 79.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 2.6e-135 487.6 307 79.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.5e-135 486.9 620 48.4
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.2e-125 454.1 285 83.2
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.3e-123 448.7 812 36.7
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 7.9e-108 396.4 1330 28.2
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 4.2e-101 374.0 229 79.5
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 2.8e-89 334.7 198 82.8
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.8e-89 334.0 522 42.5
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 1.6e-87 328.9 283 67.1
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 3.8e-86 324.3 182 86.3
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 3.0e-83 314.7 205 76.1
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.4e-75 289.3 260 65.0
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 5.7e-74 283.9 187 72.7
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 6.8e-67 260.4 144 87.5
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 3.4e-66 258.1 186 73.7
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 2.4e-64 251.9 181 71.8
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 8.9e-51 206.8 132 80.3
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 8.3e-49 200.3 118 87.3
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 7.8e-47 193.7 207 56.0
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 9.5e-45 186.8 125 73.6
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 7.3e-37 160.6 92 89.1
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.0e-30 140.2 86 79.1
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 1.0e-30 140.2 91 73.6
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 1.0e-30 140.2 91 73.6
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.3e-22 113.2 78 74.4
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.2e-18 100.1 82 67.1
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 3.4e-18 98.6 81 54.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 5.8e-18 97.8 136 48.5
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 1.1e-16 93.6 106 50.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 4.2e-16 91.7 46 82.6
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 4.2e-16 91.7 59 74.6


User provided reference genes

Program Settings