Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0273791 Rosa chinensis HOM05D001703 ORTHO05D342029 2.4e-48 195.3 104 100.0
FvH4_7g10500 Fragaria vesca HOM05D001703 ORTHO05D005708 7.9e-12 73.9 61 65.6
FAN01G2709 Fragaria x ananassa HOM05D001703 ORTHO05D005708 7.9e-12 73.9 61 65.6
FAN06G1838 Fragaria x ananassa HOM05D001703 ORTHO05D005708 7.9e-12 73.9 61 65.6
FAN06G3291 Fragaria x ananassa HOM05D001703 ORTHO05D005708 7.9e-12 73.9 61 65.6
FAN10G2068 Fragaria x ananassa HOM05D001703 ORTHO05D005708 7.9e-12 73.9 61 65.6
FAN10G3449 Fragaria x ananassa HOM05D001703 ORTHO05D005708 7.9e-12 73.9 61 65.6
RcHm_v2.0_Chr1g0348291 Rosa chinensis HOM05D001703 ORTHO05D005708 7.9e-12 73.9 61 65.6
MD07G1111000 Malus domestica HOM05D001703 ORTHO05D005708 1.0e-11 73.6 60 66.7
ECA236G3770 Erigeron canadensis HOM05D001703 ORTHO05D005708 1.4e-11 73.2 60 65.0
Lalb_Chr03g0039991 Lupinus albus HOM05D001703 ORTHO05D005708 1.4e-11 73.2 60 66.7
Medtr7g044770 Medicago truncatula HOM05D001703 ORTHO05D005708 1.8e-11 72.8 44 81.8
TPR.G39063 Trifolium pratense HOM05D001703 ORTHO05D005708 1.8e-11 72.8 44 81.8
EL10Ac8g19417 Beta vulgaris HOM05D001703 ORTHO05D005708 2.3e-11 72.4 60 65.0
AUR62033018 Chenopodium quinoa HOM05D001703 ORTHO05D005708 2.3e-11 72.4 60 65.0
AUR62034061 Chenopodium quinoa HOM05D001703 ORTHO05D005708 2.3e-11 72.4 60 65.0
Psat3g052960 Pisum sativum HOM05D001703 ORTHO05D005708 2.3e-11 72.4 60 63.3
Actinidia33491 Actinidia chinensis HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Aa31LG1G26610 Aethionema arabicum HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Ah.05g167390 Amaranthus hybridus HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
AL4G44120 Arabidopsis lyrata HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
AT1G45332 Arabidopsis thaliana HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
AT2G45030 Arabidopsis thaliana HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Carub.0004s2762 Capsella rubella HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
CARHR140280 Cardamine hirsuta HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
CiPaw.13G030200 Carya illinoinensis HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Haze_02737 Corylus avellana HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Eucgr.D02509 Eucalyptus grandis HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Thhalv10001325m.g Eutrema salsugineum HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Lalb_Chr01g0021531 Lupinus albus HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 65.0
Oeu061508.1 Olea europaea HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 65.0
Oeu063215.2 Olea europaea HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 65.0
PSO063G3743 Papaver somniferum HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
PSO782G2754 Papaver somniferum HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
SalBow5G4945 Salvia bowleyana HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
Hund12552 Selenicereus undatus HOM05D001703 ORTHO05D005708 3.0e-11 72.0 69 58.0
THA.LOC104827585 Tarenaya hassleriana HOM05D001703 ORTHO05D005708 3.0e-11 72.0 60 63.3
ATR0564G237 Amborella trichopoda HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
arahy.Tifrunner.gnm1.ann1.FL2079 Arachis hypogaea HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
CAN.G899.24 Capsicum annuum HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Cfa011126 Carpinus fangiana HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Ca_07392_v3 Cicer arietinum L. HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
ClCG06G002530 Citrullus lanatus HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
COL.COLO4_12454 Corchorus olitorius HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
MELO3C022276.2 Cucumis melo HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
CsaV3_6G008600 Cucumis sativus L. HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Duzib133G0844 Durio zibethinus HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Duzib138G1530 Durio zibethinus HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Migut.B01569 Erythranthe guttata HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Glyma.01G075300 Glycine max HOM05D001703 ORTHO05D012658 3.9e-11 71.6 60 63.3
Glyma.11G163201 Glycine max HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Gohir.A07G147800 Gossypium hirsutum HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Gohir.D07G154000 Gossypium hirsutum HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Gorai.001G176200 Gossypium raimondii HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Gorai.007G087600 Gossypium raimondii HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Hma1.2p1_1040F.1_g250930 Hydrangea macrophylla HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Hma1.2p1_1098F.1_g256720 Hydrangea macrophylla HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Lj9C561G12 Lonicera japonica HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Manes.13G145400 Manihot esculenta HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Nn6g33913 Nelumbo nucifera HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Nitab4.5_0001823g0080 Nicotiana tabacum HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Nitab4.5_0003110g0050 Nicotiana tabacum HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Os03g0565500 Oryza sativa ssp. japonica HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 61.7
Peaxi162Scf00377g00725 Petunia axillaris HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Potri.001G123600 Populus trichocarpa HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Potri.003G109900 Populus trichocarpa HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Prupe.2G134500 Prunus persica HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
PGR004G2547 Punica granatum HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
QL04p035341 Quercus lobata HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Rhsim02G0217200 Rhododendron simsii HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Sabra01G0095200 Salix brachista HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Sabra03G0076100 Salix brachista HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Solyc01g090690.4 Solanum lycopersicum HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Sopen01g036420 Solanum pennellii HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Thecc.01G387100 Theobroma cacao HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
TAR375G0518 Trochodendron aralioides HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
unitig_0.g1321 Utricularia gibba HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
vmacro13467 Vaccinium macrocarpon HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 63.3
Zm00001eb064310 Zea mays HOM05D001703 ORTHO05D005708 3.9e-11 71.6 60 61.7
Actinidia12665 Actinidia chinensis HOM05D001703 ORTHO05D005708 5.1e-11 71.2 60 63.3
HanXRQChr04g0123481 Helianthus annuus HOM05D001703 ORTHO05D005708 5.1e-11 71.2 60 63.3
Psat3g157880 Pisum sativum HOM05D001703 ORTHO05D005708 6.7e-11 70.9 44 77.3
CDE08G0912 Ceratophyllum demersum HOM05D001703 ORTHO05D012658 8.8e-11 70.5 60 61.7
Gohir.D11G081900 Gossypium hirsutum HOM05D001703 ORTHO05D005708 8.8e-11 70.5 60 61.7
Lj1g0021366 Lotus japonicus HOM05D001703 ORTHO05D005708 8.8e-11 70.5 60 61.7
Phvul.008G157300 Phaseolus vulgaris HOM05D001703 ORTHO05D005708 8.8e-11 70.5 60 61.7
PGSC0003DMG400026030 Solanum tuberosum HOM05D001703 ORTHO05D005708 8.8e-11 70.5 60 61.7
SGA_v2.0_scaffold153G36946 Striga asiatica HOM05D001703 ORTHO05D005708 8.8e-11 70.5 60 61.7
VMungo1383G1201 Vigna mungo HOM05D001703 ORTHO05D005708 8.8e-11 70.5 60 61.7
BcaC02g12268 Brassica carinata HOM05D001703 ORTHO05D005708 1.1e-10 70.1 60 61.7
A05p05120 Brassica napus HOM05D001703 ORTHO05D005708 1.1e-10 70.1 60 61.7
C04p05970 Brassica napus HOM05D001703 ORTHO05D005708 1.1e-10 70.1 60 61.7
BolC4t22228H Brassica oleracea HOM05D001703 ORTHO05D005708 1.1e-10 70.1 60 61.7
BraA05t19486Z Brassica rapa HOM05D001703 ORTHO05D005708 1.1e-10 70.1 60 61.7
CSS0006474 Camellia sinensis var. sinensis HOM05D001703 ORTHO05D005708 1.1e-10 70.1 60 61.7
CSS0031871 Camellia sinensis var. sinensis HOM05D001703 ORTHO05D005708 1.1e-10 70.1 60 61.7
Sp4g27090 Schrenkiella parvula HOM05D001703 ORTHO05D005708 1.1e-10 70.1 60 61.7
Atru.chr5.204 Acer truncatum HOM05D001703 ORTHO05D005708 1.5e-10 69.7 60 61.7
Ciclev10018974m.g Citrus clementina HOM05D001703 ORTHO05D005708 1.5e-10 69.7 60 61.7
Dinv44101 Davidia involucrata HOM05D001703 ORTHO05D005708 1.5e-10 69.7 60 61.7
MBI07_g35164_MAGBIO Magnolia biondii HOM05D001703 ORTHO05D005708 1.5e-10 69.7 60 61.7
Sed0002552 Sechium edule HOM05D001703 ORTHO05D005708 1.5e-10 69.7 60 61.7
Sc12g0008260 Simmondsia chinensis HOM05D001703 ORTHO05D005708 1.5e-10 69.7 60 61.7
TWI14G0062 Tripterygium wilfordii HOM05D001703 ORTHO05D005708 2.0e-10 69.3 60 61.7
TWI59G0672 Tripterygium wilfordii HOM05D001703 ORTHO05D005708 2.0e-10 69.3 60 61.7
Aqoxy5G03848 Aquilegia oxysepala HOM05D001703 ORTHO05D005708 2.5e-10 68.9 60 61.7
GSVIVG01018186001 Vitis vinifera HOM05D001703 ORTHO05D005708 2.5e-10 68.9 60 60.0
Cc02_g24480 Coffea canephora HOM05D001703 ORTHO05D005708 3.3e-10 68.6 60 60.0
DCAR_031877 Daucus carota HOM05D001703 ORTHO05D005708 3.3e-10 68.6 60 60.0
AagrBONN_evm.TU.Sc2ySwM_340.168 Anthoceros agrestis HOM05D001703 ORTHO05D005708 4.3e-10 68.2 61 60.7
Pp3c19_15980 Physcomitrium patens HOM05D001703 ORTHO05D005708 4.3e-10 68.2 61 60.7
Pp3c22_17180 Physcomitrium patens HOM05D001703 ORTHO05D005708 4.3e-10 68.2 61 60.7
SEGI_18917 Sequoiadendron giganteum HOM05D001703 ORTHO05D005708 7.4e-10 67.4 60 60.0
Mapoly0029s0132 Marchantia polymorpha HOM05D001703 ORTHO05D005708 9.7e-10 67.0 61 59.0
VMungo0647G0991 Vigna mungo HOM05D001703 ORTHO05D012658 1.3e-09 66.6 60 56.7
Medtr2g020660 Medicago truncatula HOM05D001703 ORTHO05D005708 3.7e-09 65.1 60 60.0
SMO361G0314 Selaginella moellendorffii HOM05D001703 ORTHO05D005708 4.8e-09 64.7 61 55.7
MCO11G478 Micromonas commoda HOM05D001703 ORTHO05D005708 8.2e-09 63.9 61 55.7
Psat2g188480 Pisum sativum HOM05D001703 ORTHO05D012658 4.1e-08 61.6 37 75.7
Cre11.g467553 Chlamydomonas reinhardtii HOM05D001703 ORTHO05D005708 1.5e-07 59.7 59 54.2
Cfa026916 Carpinus fangiana HOM05D001703 ORTHO05D005708 3.4e-07 58.5 61 49.2
PRCOL_00004175 Prasinoderma coloniale HOM05D001703 ORTHO05D005708 1.7e-06 56.2 51 47.1


User provided reference genes

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