Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 3.0e-145 518.5 256 100.0
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 2.5e-139 498.8 256 94.5
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 2.5e-139 498.8 256 94.5
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 2.5e-139 498.8 256 94.5
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 2.7e-138 495.4 256 94.1
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 4.6e-138 494.6 256 94.1
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 6.0e-138 494.2 256 93.4
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 2.0e-133 479.2 256 91.8
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 2.0e-133 479.2 256 91.8
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 2.2e-132 475.7 254 90.2
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 6.5e-132 474.2 256 89.1
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 6.5e-132 474.2 257 89.9
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 8.5e-132 473.8 255 89.8
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 8.5e-132 473.8 255 89.8
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 1.6e-130 469.5 256 88.7
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 4.6e-130 468.0 257 88.3
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 7.9e-130 467.2 256 88.3
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 3.0e-129 465.3 257 88.3
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 8.8e-129 463.8 257 88.7
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 8.8e-129 463.8 257 88.3
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 1.1e-128 463.4 257 87.2
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 1.5e-128 463.0 257 88.3
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 4.3e-128 461.5 254 87.8
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.7e-127 459.5 257 87.2
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.7e-127 459.5 257 87.2
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 2.8e-127 458.8 255 87.8
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 2.8e-127 458.8 257 87.2
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 4.8e-127 458.0 256 86.3
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 1.4e-126 456.4 257 86.4
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 1.8e-126 456.1 257 86.4
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 5.3e-126 454.5 257 86.8
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 6.9e-126 454.1 257 85.6
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 1.2e-125 453.4 257 86.4
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.5e-125 453.0 257 84.4
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 2.0e-125 452.6 257 85.6
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 2.0e-125 452.6 257 85.6
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 5.9e-125 451.1 257 86.4
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 1.0e-124 450.3 257 84.8
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 84.8
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 84.8
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 85.6
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 85.2
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.9e-124 448.7 257 85.6
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 8.5e-124 447.2 257 84.4
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 3.2e-123 445.3 257 86.8
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 3.2e-123 445.3 253 85.0
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 5.5e-123 444.5 257 83.7
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 2.1e-122 442.6 257 84.0
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 3.6e-122 441.8 256 83.6
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 3.6e-122 441.8 256 83.6
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.6e-122 441.8 264 82.6
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 4.7e-122 441.4 256 83.6
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 6.1e-122 441.0 253 84.2
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 3.0e-121 438.7 254 84.6
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 3.9e-121 438.3 257 82.9
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 8.8e-121 437.2 257 82.9
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 2.0e-120 436.0 256 85.2
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 4.4e-120 434.9 257 82.9
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 5.7e-120 434.5 257 84.8
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 5.7e-120 434.5 257 84.8
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 5.7e-120 434.5 257 84.8
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 2.8e-119 432.2 249 85.5
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 3.7e-119 431.8 249 85.5
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 4.8e-119 431.4 257 82.5
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 4.8e-119 431.4 257 82.5
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 4.8e-119 431.4 257 82.5
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 4.8e-119 431.4 257 82.5
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 4.8e-119 431.4 257 82.5
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 4.8e-119 431.4 271 79.3
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 4.8e-119 431.4 302 73.2
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 82.1
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.1e-118 430.3 271 79.3
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.1e-118 430.3 257 82.1
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.1e-118 430.3 257 82.1
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.4e-118 429.1 257 82.1
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 2.4e-118 429.1 257 81.3
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 4.1e-118 428.3 257 82.9
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 1.2e-117 426.8 257 81.3
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.6e-117 425.6 257 81.3
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 3.4e-117 425.2 257 80.9
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 7.7e-117 424.1 257 80.9
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 7.7e-117 424.1 257 81.7
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.0e-116 423.7 263 79.5
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 2.9e-116 422.2 257 80.2
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 3.2e-115 418.7 257 80.2
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 4.2e-115 418.3 258 78.3
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 9.4e-115 417.2 257 77.8
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 3.0e-113 412.1 230 87.0
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 3.9e-113 411.8 257 78.6
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.3e-111 406.8 255 77.3
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 2.4e-110 402.5 257 75.9
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 7.0e-110 401.0 253 77.1
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 3.5e-109 398.7 250 78.8
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 3.2e-107 392.1 249 76.7
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 3.2e-107 392.1 257 75.1
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 3.0e-105 385.6 214 86.0
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 5.2e-105 384.8 281 72.6
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.1e-102 375.6 222 82.0
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 1.2e-101 373.6 231 77.5
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 4.5e-101 371.7 257 75.1
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 2.9e-100 369.0 257 74.3
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 7.2e-99 364.4 214 81.8
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 1.1e-94 350.5 249 69.1
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 2.5e-91 339.3 247 68.0
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.2e-90 337.0 198 83.3
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 4.7e-90 335.1 251 66.1
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 9.8e-88 327.4 250 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 4.1e-86 322.0 251 64.9
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 4.5e-85 318.5 203 74.9
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 2.0e-80 303.1 171 85.4
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 3.5e-69 265.8 170 75.9
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 2.5e-67 259.6 153 82.4
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 4.7e-66 255.4 142 87.3
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 3.4e-64 249.2 254 53.1
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 6.4e-63 245.0 132 87.1
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 2.4e-62 243.0 198 66.2
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 2.7e-61 239.6 248 49.2
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 4.7e-58 228.8 130 84.6
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 2.5e-51 206.5 114 86.8
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 7.3e-51 204.9 112 85.7
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.6e-50 203.8 267 41.9
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.6e-50 202.6 116 76.7
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 4.4e-48 195.7 105 86.7
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 7.6e-48 194.9 105 88.6
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 9.9e-48 194.5 156 62.8
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 6.6e-44 181.8 257 45.9
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 4.3e-43 179.1 105 82.9
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.6e-42 177.2 104 83.7
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.0e-41 172.6 105 81.0
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 8.1e-34 148.3 116 67.2
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 2.0e-32 143.7 91 70.3
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 1.8e-25 120.6 79 77.2
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 9.0e-25 118.2 102 58.8
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 5.8e-24 115.5 59 91.5
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 5.8e-24 115.5 96 63.5
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 5.5e-14 82.4 55 72.7
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 1.8e-12 77.4 71 59.2
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 4.5e-08 62.8 40 77.5


User provided reference genes

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