Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0273231 Rosa chinensis HOM05D000238 ORTHO05D346020 2.4e-32 141.4 63 100.0
RcHm_v2.0_Chr5g0044441 Rosa chinensis HOM05D000238 ORTHO05D001156 1.8e-14 82.0 37 94.6
FAN11G3067 Fragaria x ananassa HOM05D000238 ORTHO05D001156 3.9e-14 80.9 37 91.9
FAN21G3770 Fragaria x ananassa HOM05D000238 ORTHO05D001156 3.9e-14 80.9 37 91.9
FAN25G0240 Fragaria x ananassa HOM05D000238 ORTHO05D001156 3.9e-14 80.9 37 91.9
FAN25G0908 Fragaria x ananassa HOM05D000238 ORTHO05D001156 3.9e-14 80.9 37 91.9
Prupe.6G129500 Prunus persica HOM05D000238 ORTHO05D001156 1.1e-11 72.8 37 86.5
CAN.G919.29 Capsicum annuum HOM05D000238 ORTHO05D001156 1.8e-11 72.0 37 81.1
CiPaw.14G100200 Carya illinoinensis HOM05D000238 ORTHO05D001156 1.8e-11 72.0 37 78.4
QL01p012322 Quercus lobata HOM05D000238 ORTHO05D001156 1.8e-11 72.0 37 78.4
Nitab4.5_0001216g0100 Nicotiana tabacum HOM05D000238 ORTHO05D001156 3.1e-11 71.2 37 83.8
Peaxi162Scf00091g00515 Petunia axillaris HOM05D000238 ORTHO05D001156 3.1e-11 71.2 37 83.8
Cfa010017 Carpinus fangiana HOM05D001616 ORTHO05D001156 5.3e-11 70.5 37 75.7
Haze_23378 Corylus avellana HOM05D000238 ORTHO05D001156 5.3e-11 70.5 37 75.7
Ciclev10028069m.g Citrus clementina HOM05D000238 ORTHO05D001156 9.1e-11 69.7 37 78.4
Duzib168G0385 Durio zibethinus HOM05D000238 ORTHO05D001156 2.0e-10 68.6 37 75.7
Solyc06g074310.4 Solanum lycopersicum HOM05D000238 ORTHO05D001156 2.0e-10 68.6 37 78.4
Sopen06g030760 Solanum pennellii HOM05D000238 ORTHO05D001156 2.0e-10 68.6 37 78.4
PGSC0003DMG401005880 Solanum tuberosum HOM05D000238 ORTHO05D001156 2.0e-10 68.6 37 78.4
Hma1.2p1_0578F.1_g182480 Hydrangea macrophylla HOM05D000238 ORTHO05D001156 2.6e-10 68.2 37 78.4
PGR102G0972 Punica granatum HOM05D000238 ORTHO05D001156 2.6e-10 68.2 37 75.7
Thecc.09G284100 Theobroma cacao HOM05D000238 ORTHO05D001156 3.4e-10 67.8 38 78.9
COL.COLO4_19884 Corchorus olitorius HOM05D000238 ORTHO05D001156 4.5e-10 67.4 38 76.3
Atru.chr3.3251 Acer truncatum HOM05D000238 ORTHO05D001156 5.9e-10 67.0 37 75.7
Lj1A237T41 Lonicera japonica HOM05D000238 ORTHO05D001156 5.9e-10 67.0 37 75.7
MD07G1260100 Malus domestica HOM05D000238 ORTHO05D046706 7.7e-10 66.6 34 82.4
Nitab4.5_0006996g0020 Nicotiana tabacum HOM05D000238 ORTHO05D001156 7.7e-10 66.6 34 82.4
ClCG01G012260 Citrullus lanatus HOM05D000238 ORTHO05D001156 1.0e-09 66.2 37 75.7
MELO3C004722.2 Cucumis melo HOM05D000238 ORTHO05D001156 1.0e-09 66.2 37 75.7
CsaV3_1G014780 Cucumis sativus L. HOM05D000238 ORTHO05D001156 1.0e-09 66.2 37 75.7
Migut.L02053 Erythranthe guttata HOM05D000238 ORTHO05D001156 1.0e-09 66.2 37 75.7
Manes.04G003900 Manihot esculenta HOM05D000238 ORTHO05D001156 1.0e-09 66.2 37 75.7
Potri.004G203200 Populus trichocarpa HOM05D000238 ORTHO05D001156 2.2e-09 65.1 34 76.5
Sabra04G0137200 Salix brachista HOM05D000238 ORTHO05D001156 2.2e-09 65.1 34 76.5
Gohir.A05G081200 Gossypium hirsutum HOM05D000238 ORTHO05D001156 2.9e-09 64.7 37 73.0
Gohir.D05G084200 Gossypium hirsutum HOM05D000238 ORTHO05D001156 2.9e-09 64.7 37 73.0
Gorai.009G086000 Gossypium raimondii HOM05D000238 ORTHO05D001156 2.9e-09 64.7 37 73.0
TWI31G0158 Tripterygium wilfordii HOM05D000238 ORTHO05D001156 2.9e-09 64.7 39 71.8
GSVIVG01036130001 Vitis vinifera HOM05D000238 ORTHO05D001156 2.9e-09 64.7 37 75.7
Sed0019659 Sechium edule HOM05D000238 ORTHO05D001156 3.8e-09 64.3 37 70.3
SalBow6G3811 Salvia bowleyana HOM05D000238 ORTHO05D001156 5.0e-09 63.9 37 73.0
Dinv29478 Davidia involucrata HOM05D000238 ORTHO05D001156 8.5e-09 63.2 34 76.5
HanXRQChr01g0024091 Helianthus annuus HOM05D000238 ORTHO05D001156 1.4e-08 62.4 34 73.5
Oeu002377.1 Olea europaea HOM05D000238 ORTHO05D001156 1.4e-08 62.4 37 70.3
DCAR_012191 Daucus carota HOM05D000238 ORTHO05D001156 2.5e-08 61.6 34 76.5
SGA_v2.0_scaffold22G09868 Striga asiatica HOM05D000238 ORTHO05D001156 3.2e-08 61.2 37 67.6
Carub.0001s0770 Capsella rubella HOM05D000238 ORTHO05D001156 5.5e-08 60.5 37 70.3
Lsat_1_v5_gn_1_59401 Lactuca sativa HOM05D000238 ORTHO05D001156 5.5e-08 60.5 34 73.5
Aa31LG9G8790 Aethionema arabicum HOM05D000238 ORTHO05D001156 7.2e-08 60.1 37 73.0
ECA248G1431 Erigeron canadensis HOM05D000238 ORTHO05D001156 1.6e-07 58.9 34 73.5
Rhsim13G0111200 Rhododendron simsii HOM05D000238 ORTHO05D001156 2.1e-07 58.5 34 70.6
TAR623G0255 Trochodendron aralioides HOM05D000238 ORTHO05D001156 3.6e-07 57.8 36 72.2
vmacro03315 Vaccinium macrocarpon HOM05D000238 ORTHO05D001156 3.6e-07 57.8 34 67.6
Actinidia24213 Actinidia chinensis HOM05D000238 ORTHO05D001156 4.6e-07 57.4 34 70.6
CARHR008230 Cardamine hirsuta HOM05D000238 ORTHO05D001156 4.6e-07 57.4 37 70.3
CSS0045270 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001156 7.9e-07 56.6 31 74.2
Actinidia07246 Actinidia chinensis HOM05D000238 ORTHO05D001156 1.0e-06 56.2 34 70.6
BcaC07g41950 Brassica carinata HOM05D000238 ORTHO05D001156 3.0e-06 54.7 37 64.9
C05p06500 Brassica napus HOM05D000238 ORTHO05D001156 3.0e-06 54.7 37 64.9
BcaB07g34081 Brassica carinata HOM05D000238 ORTHO05D001156 3.9e-06 54.3 39 61.5
BolC5t29410H Brassica oleracea HOM05D000238 ORTHO05D001156 3.9e-06 54.3 39 61.5
Aqoxy2G01204 Aquilegia oxysepala HOM05D000238 ORTHO05D001156 5.1e-06 53.9 35 68.6
A06p05370 Brassica napus HOM05D000238 ORTHO05D001156 5.1e-06 53.9 37 62.2
BraA06t23746Z Brassica rapa HOM05D000238 ORTHO05D001156 5.1e-06 53.9 37 62.2
Thhalv10007170m.g Eutrema salsugineum HOM05D000238 ORTHO05D001156 6.7e-06 53.5 37 64.9


User provided reference genes

Program Settings