Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.2e-63 245.0 128 100.0
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-55 219.5 132 88.6
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.0e-53 213.4 132 87.1
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 5.1e-53 211.1 132 85.6
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 9.0e-50 200.3 132 84.8
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 2.5e-47 192.2 133 82.7
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.5e-47 191.0 133 82.7
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 3.5e-46 188.3 130 80.0
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.1e-46 187.6 133 82.0
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.3e-45 186.4 131 81.7
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.8e-45 186.0 133 81.2
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.8e-43 177.9 132 80.3
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.7e-40 169.5 129 74.4
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-39 166.0 129 72.9
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 5.5e-39 164.5 129 73.6
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 5.1e-37 157.9 132 67.4
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.1e-36 156.8 135 65.9
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 9.7e-36 153.7 138 64.5
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.3e-35 153.3 138 63.0
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 2.2e-35 152.5 134 64.9
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.2e-33 146.7 140 60.0
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.9e-32 142.1 138 58.7
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 3.8e-32 141.7 145 57.2
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 3.2e-31 138.7 138 61.6
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 7.2e-31 137.5 141 59.6
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 1.6e-30 136.3 138 57.2
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 3.6e-30 135.2 136 57.4
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 4.7e-30 134.8 140 58.6
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.4e-29 133.3 139 57.6
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.4e-29 133.3 136 58.1
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.3e-29 132.5 142 55.6
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.3e-29 132.5 141 58.2
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 3.0e-29 132.1 138 58.7
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.1e-28 130.2 139 56.1
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 2.0e-28 129.4 133 58.6
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 3.3e-28 128.6 121 61.2
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 5.7e-28 127.9 137 58.4
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.3e-27 126.7 134 57.5
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.7e-27 126.3 150 50.7
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 4.8e-27 124.8 138 56.5
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 4.8e-27 124.8 140 53.6
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.8e-26 122.9 95 76.8
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 3.1e-26 122.1 127 56.7
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 9.1e-26 120.6 128 58.6
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 1.2e-25 120.2 141 54.6
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.5e-25 118.6 147 52.4
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 3.5e-25 118.6 126 57.9
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 3.5e-25 118.6 137 51.8
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 5.9e-25 117.9 120 57.5
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 7.7e-25 117.5 132 55.3
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 7.7e-25 117.5 135 53.3
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.0e-24 117.1 136 52.9
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.3e-24 116.7 133 56.4
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.7e-24 116.3 120 57.5
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.2e-24 115.9 135 53.3
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.9e-24 115.5 135 55.6
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 6.5e-24 114.4 134 52.2
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 6.5e-24 114.4 141 53.9
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.1e-23 113.6 128 57.0
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 1.5e-23 113.2 138 51.4
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.5e-23 112.5 136 54.4
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 3.2e-23 112.1 121 57.0
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 9.4e-23 110.5 126 54.0
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 9.4e-23 110.5 123 54.5
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 9.4e-23 110.5 134 51.5
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.2e-22 110.2 132 50.0
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 1.2e-22 110.2 117 55.6
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 2.7e-22 109.0 130 52.3
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 3.6e-22 108.6 139 50.4
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 3.6e-22 108.6 122 51.6
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 3.6e-22 108.6 120 52.5
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 4.7e-22 108.2 137 50.4
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.4e-21 106.7 128 53.1
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.4e-21 106.7 129 49.6
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.4e-21 106.7 129 49.6
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 4.0e-21 105.1 117 53.0
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 4.0e-21 105.1 129 48.8
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 4.0e-21 105.1 129 48.8
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 4.0e-21 105.1 129 48.8
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 4.0e-21 105.1 129 49.6
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 5.2e-21 104.8 138 50.0
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 6.7e-21 104.4 108 53.7
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 8.8e-21 104.0 121 49.6
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 8.8e-21 104.0 118 53.4
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.1e-20 103.6 120 49.2
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.5e-20 103.2 118 52.5
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.5e-20 103.2 118 52.5
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 1.5e-20 103.2 118 52.5
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 2.0e-20 102.8 148 45.9
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.0e-20 102.8 120 50.8
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 2.6e-20 102.4 126 51.6
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 3.3e-20 102.1 128 49.2
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.3e-20 102.1 120 48.3
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 4.4e-20 101.7 130 54.6
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 9.7e-20 100.5 115 51.3
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.3e-19 100.1 126 49.2
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.3e-19 100.1 135 48.9
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.3e-19 100.1 129 49.6
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 2.2e-19 99.4 115 54.8
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 2.8e-19 99.0 139 48.2
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 3.7e-19 98.6 124 50.0
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 3.7e-19 98.6 141 49.6
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 6.3e-19 97.8 116 54.3
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 6.3e-19 97.8 115 54.8
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.1e-18 97.1 142 47.9
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.4e-18 96.7 111 52.3
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.8e-18 96.3 124 50.0
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.4e-18 95.9 115 53.9
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 5.3e-18 94.7 133 47.4
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.2e-17 93.6 115 46.1
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.3e-16 90.1 123 51.2
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.7e-16 89.7 134 47.0
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.1e-15 87.0 87 62.1
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.9e-15 86.3 129 44.2
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.6e-14 83.2 87 60.9
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 1.6e-14 83.2 133 44.4
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 2.7e-14 82.4 97 53.6
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 4.0e-13 78.6 122 44.3
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 2.0e-12 76.3 90 51.1
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 3.4e-12 75.5 141 39.0
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 3.4e-12 75.5 130 41.5
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.3e-11 73.6 135 42.2
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 3.1e-10 68.9 105 41.0
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 9.1e-10 67.4 79 53.2
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 1.2e-09 67.0 122 39.3
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.6e-09 66.6 65 53.8
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.7e-09 65.9 77 51.9
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 3.5e-09 65.5 74 54.1
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 8.5e-08 60.8 127 37.8
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 1.1e-07 60.5 137 38.7
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 1.5e-07 60.1 122 35.2
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 1.6e-06 56.6 115 40.9


User provided reference genes

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