Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 4.0e-201 704.5 346 100.0
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.7e-172 609.4 331 90.6
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.1e-171 606.7 331 89.7
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.5e-171 605.5 331 89.4
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.6e-170 601.7 331 89.4
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 1.3e-156 556.6 327 82.6
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 2.1e-154 549.3 335 79.7
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 7.6e-144 514.2 327 76.1
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.2e-142 508.4 340 73.5
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.8e-140 503.1 309 78.3
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.0e-140 502.3 331 74.6
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 3.0e-140 502.3 323 75.9
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 5.1e-140 501.5 339 70.8
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.1e-139 500.4 336 73.2
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.3e-139 498.4 339 70.8
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 7.4e-139 497.7 339 69.6
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 3.7e-138 495.4 327 71.9
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.1e-137 493.8 334 69.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.4e-137 493.4 335 69.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 6.9e-137 491.1 338 68.6
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.0e-136 489.6 334 69.2
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.6e-136 489.2 343 70.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 5.9e-136 488.0 335 71.3
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.4e-134 483.4 333 69.1
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 3.2e-134 482.3 327 70.9
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 4.2e-134 481.9 321 70.4
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.2e-134 481.9 325 69.8
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.2e-134 481.9 325 69.8
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 9.3e-134 480.7 332 70.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.7e-133 479.2 326 70.9
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 3.6e-133 478.8 333 68.5
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 4.6e-133 478.4 333 69.4
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 4.6e-133 478.4 327 68.5
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 6.1e-133 478.0 386 63.5
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 7.9e-133 477.6 325 68.6
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.8e-132 476.5 334 69.2
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 3.0e-132 475.7 382 61.8
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 5.1e-132 474.9 330 70.9
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.5e-131 473.4 327 69.7
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 3.3e-131 472.2 325 68.6
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.8e-130 469.2 341 67.2
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 2.8e-130 469.2 318 71.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 6.3e-130 468.0 324 67.9
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 8.2e-130 467.6 325 69.5
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.1e-129 467.2 325 69.5
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.1e-129 467.2 336 68.8
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.8e-129 466.5 315 71.4
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.8e-129 466.5 326 68.4
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.8e-129 466.5 334 68.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 2.4e-129 466.1 336 68.5
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 2.4e-129 466.1 334 68.3
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 4.1e-129 465.3 372 64.2
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.2e-128 463.8 336 68.2
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.2e-128 463.8 325 69.2
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.0e-128 463.0 328 69.2
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 3.4e-128 462.2 327 67.3
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 5.9e-128 461.5 335 66.9
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.3e-127 460.3 305 72.5
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 8.5e-127 457.6 336 66.7
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.5e-126 456.1 326 66.6
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 4.2e-126 455.3 331 68.3
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 9.4e-126 454.1 338 66.6
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.2e-125 453.8 329 66.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.2e-125 453.8 329 65.7
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.6e-125 453.4 321 68.8
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.1e-125 453.0 338 66.0
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.7e-125 452.6 372 61.3
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.6e-123 446.0 329 66.0
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.7e-122 443.4 329 66.6
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 6.3e-122 441.4 329 65.7
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.8e-121 439.9 324 66.4
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.1e-121 437.6 349 63.0
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.1e-121 437.6 349 63.0
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 2.9e-119 432.6 327 64.8
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 5.0e-119 431.8 298 69.8
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.5e-118 429.5 329 64.1
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 7.2e-118 427.9 301 68.8
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.7e-117 426.0 315 64.8
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.1e-117 424.9 311 65.3
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 6.1e-117 424.9 308 66.2
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 5.7e-115 418.3 347 61.1
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.3e-114 417.2 330 62.4
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 5.3e-113 411.8 376 57.7
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.2e-112 410.6 268 70.9
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-112 410.6 328 62.2
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.0e-112 409.8 278 70.5
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 4.5e-112 408.7 306 65.4
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.9e-112 408.3 272 71.3
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.9e-111 406.0 308 64.3
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.7e-109 399.4 331 59.5
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 5.2e-108 395.2 272 68.0
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.7e-108 394.8 261 69.0
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 8.8e-108 394.4 318 60.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 5.3e-105 385.2 311 57.6
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.0e-104 383.3 323 63.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.9e-104 381.7 251 70.1
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.9e-103 379.4 330 57.6
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 6.5e-103 378.3 324 61.7
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.5e-102 376.3 249 71.1
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 9.4e-102 374.4 320 58.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 9.4e-102 374.4 335 61.8
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-99 366.7 338 60.1
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 4.4e-99 365.5 337 59.9
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.8e-98 362.8 246 70.3
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.7e-98 362.5 319 56.1
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 4.8e-98 362.1 398 50.5
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.3e-98 361.7 337 59.3
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.8e-97 360.1 209 79.4
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 4.1e-97 359.0 318 58.5
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-96 357.5 340 59.4
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 5.0e-95 352.1 346 58.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.5e-94 349.7 329 54.4
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.0e-92 342.4 313 54.6
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 5.2e-92 342.0 293 59.4
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 8.9e-92 341.3 230 70.0
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.2e-91 340.9 341 57.8
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.8e-89 333.6 323 55.7
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 3.1e-89 332.8 260 61.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 7.8e-88 328.2 310 53.5
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.6e-86 322.0 411 45.7
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.8e-85 319.7 285 57.5
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.4e-81 307.4 250 60.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 2.9e-74 283.1 305 48.9
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 9.9e-67 258.1 327 42.5
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.9e-66 256.5 301 44.9
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 4.6e-64 249.2 303 42.2
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.0e-63 248.1 306 43.1
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.6e-59 233.4 303 40.9
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 3.8e-58 229.6 144 75.0
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.6e-56 224.2 242 50.0
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 6.6e-55 218.8 134 74.6
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 4.0e-52 209.5 253 42.3
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 3.4e-51 206.5 251 45.0
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 3.8e-50 203.0 166 60.2
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 2.1e-48 197.2 113 83.2
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 4.6e-48 196.1 160 56.9
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.7e-47 194.1 322 40.1
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 7.3e-46 188.7 204 44.1
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.3e-45 188.0 327 34.9
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.2e-43 181.4 248 42.3
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.8e-37 160.2 242 39.3
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 5.3e-36 156.0 94 72.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 4.5e-35 152.9 254 36.2
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 5.6e-30 136.0 246 31.7
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 6.2e-29 132.5 393 28.5
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.5e-27 126.3 194 36.1
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 8.4e-26 122.1 252 31.7
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 4.6e-24 116.3 65 83.1
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 4.6e-24 116.3 65 83.1
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.0e-23 115.2 65 81.5
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.0e-23 113.6 157 41.4
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 3.3e-22 110.2 310 30.3
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 4.3e-22 109.8 119 41.2
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.2e-21 107.5 164 33.5
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.8e-21 107.1 108 41.7
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.8e-21 107.1 84 59.5
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.8e-20 104.4 212 32.1
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.9e-18 97.1 374 25.4
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 3.8e-18 96.7 248 29.4
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 9.4e-17 92.0 60 70.0
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 5.7e-14 82.8 80 57.5
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.1e-12 77.0 78 51.3
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 1.0e-10 72.0 61 62.3


User provided reference genes

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