Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0272281 Rosa chinensis HOM05D000706 ORTHO05D012096 6.5e-238 827.0 422 100.0
FvH4_2g12310 Fragaria vesca HOM05D000706 ORTHO05D001554 5.5e-96 355.5 292 71.6
FAN27G2281 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.7e-95 353.2 292 69.2
FAN20G1350 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.6e-71 274.2 253 68.0
MD15G1440800 Malus domestica HOM05D000706 ORTHO05D012096 2.1e-39 167.5 308 38.6
Prupe.1G582800 Prunus persica HOM05D000706 ORTHO05D001554 1.7e-36 157.9 339 36.6
Manes.10G110800 Manihot esculenta HOM05D000706 ORTHO05D001554 3.4e-21 107.1 266 32.0
Lj6g0005324 Lotus japonicus HOM05D000706 ORTHO05D001554 1.3e-20 105.1 302 29.8
QL02p102391 Quercus lobata HOM05D043302 ORTHO05D012096 1.9e-19 101.3 287 31.4
QL02p103028 Quercus lobata HOM05D043302 ORTHO05D012096 1.0e-17 95.5 283 31.1
Dinv29666 Davidia involucrata HOM05D000706 ORTHO05D001554 1.8e-17 94.7 315 28.3
Duzib132G0489 Durio zibethinus HOM05D000706 ORTHO05D001554 1.8e-17 94.7 270 29.6
Thecc.02G012800 Theobroma cacao HOM05D000706 ORTHO05D001554 1.8e-17 94.7 280 29.3
GSVIVG01023195001 Vitis vinifera HOM05D000706 ORTHO05D001554 1.1e-16 92.0 306 34.0
ClCG10G007330 Citrullus lanatus HOM05D000706 ORTHO05D001554 5.7e-16 89.7 281 31.3
MELO3C016482.2 Cucumis melo HOM05D000706 ORTHO05D001554 9.7e-16 89.0 117 43.6
Sed0026982 Sechium edule HOM05D000706 ORTHO05D012096 3.7e-15 87.0 121 41.3
TWI59G0710 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 4.8e-15 86.7 331 27.2
Sed0004427 Sechium edule HOM05D000706 ORTHO05D001554 8.2e-15 85.9 277 36.1
Lj5A276G88 Lonicera japonica HOM05D017178 ORTHO05D012096 1.4e-14 85.1 265 28.7
Dinv09371 Davidia involucrata HOM05D000706 ORTHO05D001554 6.9e-14 82.8 272 28.3
VMungo0540G0276 Vigna mungo HOM05D000706 ORTHO05D012096 2.0e-13 81.3 264 29.5
Medtr3g064250 Medicago truncatula HOM05D000706 ORTHO05D001554 2.6e-13 80.9 280 28.9
CiPaw.06G001000 Carya illinoinensis HOM05D000706 ORTHO05D001554 3.4e-13 80.5 256 30.9
Cfa019817 Carpinus fangiana HOM05D000706 ORTHO05D001554 4.5e-13 80.1 258 29.8
Phvul.006G085500 Phaseolus vulgaris HOM05D000706 ORTHO05D012096 4.5e-13 80.1 116 36.2
Actinidia16541 Actinidia chinensis HOM05D000706 ORTHO05D001554 5.9e-13 79.7 257 28.8
PSO447G0242 Papaver somniferum HOM05D000706 ORTHO05D001554 5.9e-13 79.7 294 25.9
Potri.004G133600 Populus trichocarpa HOM05D000706 ORTHO05D001554 1.3e-12 78.6 262 28.6
GSVIVG01023197001 Vitis vinifera HOM05D000706 ORTHO05D012096 1.3e-12 78.6 257 28.4
Rhsim06G0200400 Rhododendron simsii HOM05D017178 ORTHO05D012096 2.2e-12 77.8 278 26.3
TAR376G1119 Trochodendron aralioides HOM05D000706 ORTHO05D001554 2.2e-12 77.8 302 28.1
PSO210G5296 Papaver somniferum HOM05D000706 ORTHO05D001554 2.9e-12 77.4 293 27.0
SHI25322 Sapria himalayana HOM05D000706 ORTHO05D012096 2.9e-12 77.4 260 28.1
arahy.Tifrunner.gnm1.ann1.3KND2G Arachis hypogaea HOM05D000706 ORTHO05D001554 3.8e-12 77.0 91 44.0
Lalb_Chr18g0053861 Lupinus albus HOM05D000706 ORTHO05D012096 3.8e-12 77.0 87 42.5
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 1.4e-11 75.1 270 35.6
Gorai.012G170300 Gossypium raimondii HOM05D000706 ORTHO05D001554 3.2e-11 73.9 267 29.2
Gohir.D04G177400 Gossypium hirsutum HOM05D000706 ORTHO05D001554 4.2e-11 73.6 265 28.7
Sabra04G0084500 Salix brachista HOM05D000706 ORTHO05D001554 4.2e-11 73.6 268 28.0
Glyma.11G208500 Glycine max HOM05D000706 ORTHO05D001554 7.2e-11 72.8 92 41.3
GSVIVG01023170001 Vitis vinifera HOM05D000706 ORTHO05D012096 9.4e-11 72.4 76 44.7
CSS0020817 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D001554 2.1e-10 71.2 269 28.3
arahy.Tifrunner.gnm1.ann1.2RX12T Arachis hypogaea HOM05D000706 ORTHO05D001554 3.6e-10 70.5 91 41.8
Cc02_g27620 Coffea canephora HOM05D000706 ORTHO05D001554 4.6e-10 70.1 139 29.5
Medtr3g064290 Medicago truncatula HOM05D000706 ORTHO05D001554 4.6e-10 70.1 279 27.2
Peaxi162Scf00428g00822 Petunia axillaris HOM05D000706 ORTHO05D001554 4.6e-10 70.1 94 38.3
Lj3P1070T22 Lonicera japonica HOM05D017178 ORTHO05D012096 6.1e-10 69.7 95 38.9
Hma1.2p1_0157F.1_g069030 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 7.9e-10 69.3 83 38.6
Hma1.2p1_1368F.1_g278556 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 7.9e-10 69.3 83 38.6
Lj3P665T11 Lonicera japonica HOM05D017178 ORTHO05D012096 7.9e-10 69.3 113 34.5
Medtr3g064260 Medicago truncatula HOM05D000706 ORTHO05D001554 1.0e-09 68.9 284 28.5
TAR628G1033 Trochodendron aralioides HOM05D000706 ORTHO05D012096 1.0e-09 68.9 90 40.0
Nitab4.5_0003361g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001554 1.4e-09 68.6 277 24.9
FvH4_1g25810 Fragaria vesca HOM05D000706 ORTHO05D001554 2.3e-09 67.8 264 26.5
Thecc.01G144400 Theobroma cacao HOM05D000706 ORTHO05D001554 2.3e-09 67.8 309 27.2
CsaV3_7G023180 Cucumis sativus L. HOM05D000706 ORTHO05D001554 3.0e-09 67.4 259 23.2
Ca_17061_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 5.1e-09 66.6 263 28.1
COL.COLO4_17687 Corchorus olitorius HOM05D000706 ORTHO05D001554 5.1e-09 66.6 93 39.8
SalBow6G2696 Salvia bowleyana HOM05D000706 ORTHO05D001554 5.1e-09 66.6 94 38.3
FAN19G2540 Fragaria x ananassa HOM05D000706 ORTHO05D001554 8.8e-09 65.9 255 27.1
MD15G1140400 Malus domestica HOM05D000706 ORTHO05D001554 8.8e-09 65.9 296 25.0
FAN26G0079 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.1e-08 65.5 266 26.3
Atru.chr4.14_Atru.chr4.15 Acer truncatum HOM05D000706 ORTHO05D001554 1.5e-08 65.1 270 26.7
Ah.03g136980 Amaranthus hybridus HOM05D000572 ORTHO05D000840 1.5e-08 65.1 77 36.4
Nitab4.5_0000634g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001554 2.5e-08 64.3 280 24.6
MELO3C012577.2 Cucumis melo HOM05D000706 ORTHO05D001554 3.3e-08 63.9 258 23.6
Sc16g0009760 Simmondsia chinensis HOM05D000706 ORTHO05D001554 3.3e-08 63.9 264 31.8
Aqoxy7G00126_Aqoxy7G00127 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 4.3e-08 63.5 290 23.4
EL10Ac6g14021 Beta vulgaris HOM05D000706 ORTHO05D001554 4.3e-08 63.5 85 37.6
Gorai.005G172400 Gossypium raimondii HOM05D000706 ORTHO05D001554 4.3e-08 63.5 265 27.9
Ca_25266_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 7.4e-08 62.8 90 33.3
TPR.G23221 Trifolium pratense HOM05D000706 ORTHO05D001554 9.7e-08 62.4 107 32.7
FAN28G2355 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.3e-07 62.0 110 32.7
Medtr3g064270 Medicago truncatula HOM05D000706 ORTHO05D001554 1.3e-07 62.0 286 26.6
MSTRG.16476 Avicennia marina HOM05D000706 ORTHO05D001554 1.7e-07 61.6 263 29.3
CAN.G170.123 Capsicum annuum HOM05D000706 ORTHO05D001554 1.7e-07 61.6 85 38.8
Lalb_Chr22g0354261 Lupinus albus HOM05D000706 ORTHO05D001554 1.7e-07 61.6 109 33.9
Medtr6g065790 Medicago truncatula HOM05D000706 ORTHO05D001554 1.7e-07 61.6 95 34.7
Lj5C190G5 Lonicera japonica HOM05D000706 ORTHO05D001633 3.7e-07 60.5 289 23.5
Duzib147G0053 Durio zibethinus HOM05D000706 ORTHO05D001554 4.8e-07 60.1 263 25.1
Lj2g0014541 Lotus japonicus HOM05D000706 ORTHO05D001554 4.8e-07 60.1 121 28.1
SGA_v2.0_scaffold32G13215 Striga asiatica HOM05D000706 ORTHO05D001633 6.3e-07 59.7 279 22.9
Medtr3g064280 Medicago truncatula HOM05D000706 ORTHO05D001554 8.2e-07 59.3 306 25.5
Sopen01g033940 Solanum pennellii HOM05D000706 ORTHO05D001554 8.2e-07 59.3 314 24.2
EL10Ac4g09693 Beta vulgaris HOM05D000706 ORTHO05D001554 1.1e-06 58.9 283 26.5
RcHm_v2.0_Chr3g0484911 Rosa chinensis HOM05D000706 ORTHO05D001554 1.1e-06 58.9 86 33.7
AT5G08430 Arabidopsis thaliana HOM05D000706 ORTHO05D001554 1.4e-06 58.5 277 26.0
ClCG09G022930 Citrullus lanatus HOM05D000706 ORTHO05D001554 1.4e-06 58.5 95 32.6
TAR636G1687 Trochodendron aralioides HOM05D000325 ORTHO05D012096 1.4e-06 58.5 91 38.5
Prupe.4G286800 Prunus persica HOM05D000706 ORTHO05D001554 1.8e-06 58.2 265 24.2
COL.COLO4_12141 Corchorus olitorius HOM05D000706 ORTHO05D001554 2.4e-06 57.8 263 25.1
TWI79G1627 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 2.4e-06 57.8 80 35.0
Aqoxy5G01350_Aqoxy5G01351 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 3.1e-06 57.4 82 40.2
RcHm_v2.0_Chr1g0380461 Rosa chinensis HOM05D000706 ORTHO05D012096 3.1e-06 57.4 33 87.9
Ah.08g223070 Amaranthus hybridus HOM05D001447 ORTHO05D005061 4.1e-06 57.0 99 30.3
SHI08584 Sapria himalayana HOM05D000706 ORTHO05D001633 4.1e-06 57.0 58 34.5
FAN23G1421 Fragaria x ananassa HOM05D000706 ORTHO05D001554 5.3e-06 56.6 258 25.2
Solyc01g086950.4 Solanum lycopersicum HOM05D000706 ORTHO05D001554 6.9e-06 56.2 92 37.0
PGSC0003DMG400006879 Solanum tuberosum HOM05D000706 ORTHO05D001554 6.9e-06 56.2 92 35.9
CARHR190040 Cardamine hirsuta HOM05D000706 ORTHO05D001554 9.1e-06 55.8 259 26.3
Thhalv10013270m.g Eutrema salsugineum HOM05D000706 ORTHO05D001554 9.1e-06 55.8 260 24.6
Gohir.D02G153300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 9.1e-06 55.8 257 25.7
PSO675G4911 Papaver somniferum HOM05D000706 ORTHO05D001554 9.1e-06 55.8 59 40.7


User provided reference genes

Program Settings