Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 2771.9 1414 100.0
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 2327.4 1425 85.2
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 2305.8 1450 83.5
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 2295.0 1424 84.9
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 2105.9 1452 76.2
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 2045.8 1470 74.4
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 2009.2 1470 72.5
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1860.5 1460 67.6
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1859.0 1493 66.5
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1846.2 1461 67.5
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1797.3 1472 64.9
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1795.8 1488 64.9
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1792.7 1467 66.3
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1775.4 1448 64.3
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1773.4 1468 64.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1759.6 1425 66.0
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1754.6 1470 63.7
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1746.1 1446 64.5
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1734.9 1467 63.8
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1730.7 1489 62.1
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1711.4 1486 62.2
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1710.3 1466 63.2
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1699.1 1468 62.5
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1697.9 1486 61.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1694.1 1486 61.4
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1689.1 1459 61.7
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1686.8 1498 61.1
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1685.6 1461 61.8
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1682.5 1501 61.2
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1680.6 1469 61.7
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1678.7 1469 62.3
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1678.3 1471 62.0
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1669.8 1469 61.5
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1667.1 1473 62.1
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1662.5 1439 62.7
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1630.9 1544 58.5
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1625.9 1463 60.9
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1622.1 1466 60.0
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1614.0 1486 58.1
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1612.4 1520 60.3
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1582.0 1485 58.0
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1566.6 1487 58.0
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1562.0 1495 57.2
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1540.0 1482 57.4
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1533.9 1486 57.1
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1531.2 1464 57.0
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1521.5 1473 58.0
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1520.8 1476 57.0
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1516.1 1474 57.2
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1515.7 1443 57.2
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1514.2 1497 56.1
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1510.7 1499 57.0
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1503.0 1472 58.2
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1496.9 1496 57.1
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1495.7 1492 56.3
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1485.3 1485 56.6
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1483.8 1283 63.8
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1479.2 1228 64.0
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1468.8 1461 56.5
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1461.0 1483 56.5
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1459.5 1426 57.5
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1459.5 1337 60.6
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1455.3 1434 55.9
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1453.0 1403 57.7
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1444.5 1436 56.0
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1438.7 1476 54.9
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1429.5 1441 56.0
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1428.7 1447 55.4
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1414.4 1490 55.1
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1412.9 1434 55.6
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1411.4 1435 56.5
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1398.3 1280 60.2
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1391.3 1412 54.3
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1384.0 1422 54.9
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1383.6 1430 53.6
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1370.1 1432 53.1
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1370.1 1432 53.1
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1368.6 1429 53.0
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1367.1 1431 53.0
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1366.7 1436 53.0
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1328.9 1419 53.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1326.2 1442 54.0
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1298.1 1393 52.3
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1290.8 1319 56.8
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1244.2 1455 48.7
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1236.5 1462 48.8
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1201.8 1119 59.8
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1190.6 1094 61.3
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1179.1 1119 59.1
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1173.7 1153 55.9
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1167.1 1282 53.0
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1152.9 1153 57.2
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1104.4 1365 48.4
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1092.0 918 64.3
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 3.6e-301 1038.9 1064 57.2
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 3.4e-299 1032.3 1310 46.9
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.6e-256 890.6 1517 40.0
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.8e-252 877.1 1457 40.8
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 8.2e-245 851.7 1516 39.1
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 4.0e-239 832.8 958 52.4
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 5.2e-239 832.4 1010 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 9.2e-228 795.0 1511 36.1
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 7.1e-204 715.7 514 69.8
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 2.7e-203 713.8 843 49.7
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 3.7e-168 597.0 416 70.0
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 1.0e-165 589.0 1978 29.5
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.5e-158 565.1 627 53.9
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 4.3e-153 547.0 580 53.4
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 4.8e-144 516.9 877 41.3
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.0e-138 499.2 443 60.9
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 2.5e-132 478.0 589 49.4
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.0e-126 458.4 428 57.5
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 7.5e-121 439.9 1322 29.3
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 6.2e-91 340.5 350 53.4
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 8.9e-90 336.7 758 36.1
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 8.3e-88 330.1 231 70.6
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 4.7e-75 287.7 261 57.9
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 3.1e-74 285.0 393 45.8
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 9.6e-68 263.5 1136 26.2
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 6.7e-61 240.7 240 55.8
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.3e-53 215.7 163 71.2
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 8.8e-29 134.0 81 77.8
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 5.7e-28 131.3 90 73.3
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 3.4e-25 122.1 94 66.0
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 8.0e-22 110.9 97 58.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 6.7e-21 107.8 68 69.1
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.2e-16 92.8 67 64.2
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 8.5e-16 90.9 95 49.5
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 4.2e-15 88.6 78 57.7
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.6e-14 86.7 104 46.2
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 2.7e-14 85.9 88 62.5
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 7.5e-12 77.8 49 73.5
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 1.3e-11 77.0 106 41.5
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.1e-10 72.4 70 54.3
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 2.0e-09 69.7 42 73.8


User provided reference genes

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