Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 4.5e-46 187.6 96 100.0
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 2.5e-44 181.8 96 96.9
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.5e-44 181.8 96 96.9
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.5e-44 181.8 96 96.9
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.5e-44 181.8 96 96.9
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 9.5e-44 179.9 96 95.8
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 3.2e-39 164.9 91 90.1
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 3.2e-39 164.9 91 90.1
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 2.0e-38 162.2 91 87.9
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 2.0e-38 162.2 86 94.2
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 3.5e-38 161.4 85 94.1
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 7.8e-38 160.2 96 83.3
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 1.0e-37 159.8 96 84.4
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 1.3e-37 159.5 92 90.2
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 1.7e-37 159.1 86 90.7
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 2.3e-37 158.7 85 91.8
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 8.6e-37 156.8 87 90.8
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 1.1e-36 156.4 87 88.5
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 1.5e-36 156.0 87 87.4
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 1.9e-36 155.6 85 90.6
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 2.5e-36 155.2 87 88.5
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 2.5e-36 155.2 84 90.5
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 2.5e-36 155.2 84 90.5
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 2.5e-36 155.2 83 91.6
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 2.5e-36 155.2 98 81.6
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 5.6e-36 154.1 90 84.4
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 7.3e-36 153.7 88 88.6
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 9.5e-36 153.3 86 86.0
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 2.1e-35 152.1 85 87.1
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 2.8e-35 151.8 91 82.4
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 2.8e-35 151.8 80 93.8
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 3.6e-35 151.4 93 81.7
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 3.6e-35 151.4 91 82.4
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 3.6e-35 151.4 88 85.2
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 3.6e-35 151.4 93 82.8
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 4.7e-35 151.0 85 88.2
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 4.7e-35 151.0 87 87.4
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 6.1e-35 150.6 85 87.1
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 6.1e-35 150.6 80 93.8
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 6.1e-35 150.6 80 93.8
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 6.1e-35 150.6 80 93.8
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 6.1e-35 150.6 82 89.0
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 8.0e-35 150.2 85 88.2
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 8.0e-35 150.2 85 87.1
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 1.0e-34 149.8 93 81.7
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 1.0e-34 149.8 91 82.4
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.0e-34 149.8 93 82.8
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 1.0e-34 149.8 85 87.1
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 1.4e-34 149.4 85 87.1
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 1.4e-34 149.4 93 79.6
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 1.4e-34 149.4 90 82.2
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 1.4e-34 149.4 90 81.1
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 1.4e-34 149.4 85 87.1
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 3.1e-34 148.3 85 85.9
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 3.1e-34 148.3 85 84.7
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 3.1e-34 148.3 99 74.7
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 4.0e-34 147.9 86 84.9
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 4.0e-34 147.9 90 82.2
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 5.2e-34 147.5 80 92.5
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 5.2e-34 147.5 85 85.9
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 5.2e-34 147.5 86 86.0
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 6.8e-34 147.1 119 67.2
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 1.2e-33 146.4 96 77.1
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 1.5e-33 146.0 86 87.2
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 2.0e-33 145.6 96 77.1
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 2.0e-33 145.6 107 72.0
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 2.6e-33 145.2 90 78.9
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 3.4e-33 144.8 85 83.5
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 3.4e-33 144.8 80 87.5
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 5.8e-33 144.1 91 81.3
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 5.8e-33 144.1 82 84.1
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 5.8e-33 144.1 85 85.9
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 9.8e-33 143.3 96 75.0
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 9.8e-33 143.3 84 83.3
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 9.8e-33 143.3 95 76.8
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.7e-32 142.5 87 80.5
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 2.2e-32 142.1 79 87.3
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 2.2e-32 142.1 83 83.1
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 2.2e-32 142.1 85 82.4
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 2.2e-32 142.1 87 80.5
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 2.9e-32 141.7 82 82.9
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 3.7e-32 141.4 82 82.9
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 3.7e-32 141.4 92 76.1
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 3.7e-32 141.4 84 83.3
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 3.7e-32 141.4 87 85.1
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.4e-31 139.4 96 77.1
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 1.4e-31 139.4 79 86.1
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 1.9e-31 139.0 85 80.0
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 2.4e-31 138.7 80 82.5
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 3.2e-31 138.3 92 77.2
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 4.1e-31 137.9 92 75.0
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 5.4e-31 137.5 79 83.5
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 7.0e-31 137.1 96 69.8
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 7.0e-31 137.1 96 69.8
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 7.0e-31 137.1 96 69.8
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 7.0e-31 137.1 85 76.5
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 9.2e-31 136.7 82 79.3
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 9.2e-31 136.7 82 79.3
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 9.2e-31 136.7 99 72.7
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 1.6e-30 136.0 91 74.7
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 2.0e-30 135.6 82 78.0
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 2.0e-30 135.6 82 78.0
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 2.7e-30 135.2 86 75.6
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 7.8e-30 133.7 80 78.8
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 7.8e-30 133.7 83 80.7
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 1.3e-29 132.9 80 78.8
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 1.3e-29 132.9 80 78.8
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 3.9e-29 131.3 91 73.6
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 7.3e-28 127.1 78 80.8
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 1.4e-26 122.9 78 76.9
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 4.4e-25 117.9 144 48.6
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 5.8e-25 117.5 68 88.2
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 9.8e-25 116.7 139 49.6
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 2.9e-24 115.2 62 91.9
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 1.4e-23 112.8 78 69.2
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 1.2e-22 109.8 78 67.9
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 3.0e-21 105.1 66 77.3
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.4e-17 91.7 52 88.5
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.4e-17 91.7 52 88.5
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.4e-17 91.7 52 88.5
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 2.4e-15 85.5 86 53.5
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 2.7e-14 82.0 49 83.7
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 8.9e-10 67.0 44 72.7


User provided reference genes

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