Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0270451 Rosa chinensis HOM05D006068 ORTHO05D007579 8.3e-100 367.1 191 100.0
RcHm_v2.0_Chr6g0304221 Rosa chinensis HOM05D006068 ORTHO05D007579 5.8e-85 317.8 176 94.9
RcHm_v2.0_Chr5g0060651 Rosa chinensis HOM05D006068 ORTHO05D007579 6.4e-84 314.3 182 92.9
FAN27G1916 Fragaria x ananassa HOM05D006068 ORTHO05D007579 1.1e-83 313.5 176 93.8
FAN15G0111 Fragaria x ananassa HOM05D006068 ORTHO05D007579 2.7e-82 308.9 176 92.6
FAN20G0518 Fragaria x ananassa HOM05D006068 ORTHO05D007579 2.6e-77 292.4 211 77.3
Prupe.1G354700 Prunus persica HOM05D006068 ORTHO05D007579 1.7e-76 289.7 176 86.9
FvH4_2g37520 Fragaria vesca HOM05D006068 ORTHO05D007579 1.9e-75 286.2 161 93.8
QL02p014005 Quercus lobata HOM05D006068 ORTHO05D007579 1.6e-74 283.1 176 83.5
MD08G1002600 Malus domestica HOM05D006068 ORTHO05D007579 7.8e-74 280.8 177 84.7
Gohir.D01G092800 Gossypium hirsutum HOM05D006068 ORTHO05D007579 1.0e-73 280.4 176 84.7
Gorai.002G118100 Gossypium raimondii HOM05D006068 ORTHO05D007579 1.3e-73 280.0 176 84.7
Thecc.08G058200 Theobroma cacao HOM05D006068 ORTHO05D007579 2.3e-73 279.3 176 84.1
Duzib093G0636 Durio zibethinus HOM05D006068 ORTHO05D007579 6.6e-73 277.7 171 85.4
CANSAT25G0130 Cannabis sativa HOM05D006068 ORTHO05D007579 8.7e-73 277.3 176 83.0
Migut.C00957 Erythranthe guttata HOM05D006068 ORTHO05D007579 8.7e-73 277.3 176 83.5
Gohir.A01G106300 Gossypium hirsutum HOM05D006068 ORTHO05D007579 8.7e-73 277.3 176 83.5
Manes.18G005700 Manihot esculenta HOM05D006068 ORTHO05D007579 1.1e-72 276.9 176 81.2
SalBow7G3932 Salvia bowleyana HOM05D006068 ORTHO05D007579 1.9e-72 276.2 171 84.2
Atru.chr13.130 Acer truncatum HOM05D006068 ORTHO05D007579 3.3e-72 275.4 176 81.8
Cfa014066 Carpinus fangiana HOM05D006068 ORTHO05D007579 3.3e-72 275.4 176 83.0
CiPaw.07G139200 Carya illinoinensis HOM05D006068 ORTHO05D007579 3.3e-72 275.4 176 80.7
Glyma.04G018200 Glycine max HOM05D006068 ORTHO05D007579 3.3e-72 275.4 172 84.9
Ca_15436_v3 Cicer arietinum L. HOM05D006068 ORTHO05D007579 4.3e-72 275.0 171 81.9
Ca_15461_v3 Cicer arietinum L. HOM05D006068 ORTHO05D007579 4.3e-72 275.0 171 81.9
Cpa.g.sc26.203 Carica papaya HOM05D006068 ORTHO05D007579 5.6e-72 274.6 176 80.7
arahy.Tifrunner.gnm1.ann1.N0WG06 Arachis hypogaea HOM05D006068 ORTHO05D007579 7.3e-72 274.2 171 82.5
Ciclev10001788m.g Citrus clementina HOM05D006068 ORTHO05D007579 7.3e-72 274.2 176 81.2
Duzib116G0068 Durio zibethinus HOM05D006068 ORTHO05D007579 1.3e-71 273.5 176 81.8
arahy.Tifrunner.gnm1.ann1.M33Y2K Arachis hypogaea HOM05D006068 ORTHO05D007579 1.6e-71 273.1 171 82.5
MSTRG.1108 Avicennia marina HOM05D006068 ORTHO05D007579 1.6e-71 273.1 176 81.8
CSS0004824 Camellia sinensis var. sinensis HOM05D006068 ORTHO05D007579 2.8e-71 272.3 171 82.5
Potri.005G250000 Populus trichocarpa HOM05D006068 ORTHO05D007579 2.8e-71 272.3 177 81.4
AUR62036882 Chenopodium quinoa HOM05D006068 ORTHO05D007579 4.8e-71 271.6 176 79.5
Sabra05G0193600 Salix brachista HOM05D006068 ORTHO05D007579 4.8e-71 271.6 177 81.4
GSVIVG01008675001 Vitis vinifera HOM05D006068 ORTHO05D007579 4.8e-71 271.6 176 81.8
VMungo1309G0800 Vigna mungo HOM05D006068 ORTHO05D007579 6.2e-71 271.2 177 81.4
Actinidia17036 Actinidia chinensis HOM05D006068 ORTHO05D007579 8.1e-71 270.8 176 80.7
Phvul.009G010500 Phaseolus vulgaris HOM05D006068 ORTHO05D007579 8.1e-71 270.8 177 80.8
Hma1.2p1_0507F.1_g168430 Hydrangea macrophylla HOM05D006068 ORTHO05D007579 1.4e-70 270.0 176 80.7
Lalb_Chr08g0246381 Lupinus albus HOM05D006068 ORTHO05D007579 1.4e-70 270.0 171 80.1
Rhsim06G0007800 Rhododendron simsii HOM05D006068 ORTHO05D007579 1.4e-70 270.0 176 80.7
Sc02g0009080 Simmondsia chinensis HOM05D006068 ORTHO05D007579 1.4e-70 270.0 176 79.5
Lj6A22T18 Lonicera japonica HOM05D006068 ORTHO05D007579 1.8e-70 269.6 176 78.4
Medtr3g115240 Medicago truncatula HOM05D006068 ORTHO05D007579 1.8e-70 269.6 171 79.5
Potri.002G011000 Populus trichocarpa HOM05D006068 ORTHO05D007579 1.8e-70 269.6 177 80.8
Nn5g30933 Nelumbo nucifera HOM05D006068 ORTHO05D007579 2.4e-70 269.2 176 79.5
CSS0019755 Camellia sinensis var. sinensis HOM05D006068 ORTHO05D007579 4.0e-70 268.5 176 79.5
TPR.G38132 Trifolium pratense HOM05D006068 ORTHO05D007579 4.0e-70 268.5 171 80.1
vmacro21821 Vaccinium macrocarpon HOM05D006068 ORTHO05D007579 4.0e-70 268.5 176 80.1
Psat5g011440 Pisum sativum HOM05D006068 ORTHO05D007579 5.3e-70 268.1 171 80.1
Oeu056207.1 Olea europaea HOM05D006068 ORTHO05D007579 6.9e-70 267.7 176 79.5
TWI36G0647 Tripterygium wilfordii HOM05D006068 ORTHO05D007579 6.9e-70 267.7 176 77.8
Lj1g0017550 Lotus japonicus HOM05D006068 ORTHO05D007579 9.0e-70 267.3 171 79.5
Lalb_Chr19g0131741 Lupinus albus HOM05D006068 ORTHO05D007579 9.0e-70 267.3 171 80.7
CARHR047740 Cardamine hirsuta HOM05D006068 ORTHO05D007579 1.2e-69 266.9 178 80.3
PSO675G2053 Papaver somniferum HOM05D006068 ORTHO05D007579 1.2e-69 266.9 176 77.3
Sed0006319 Sechium edule HOM05D006068 ORTHO05D007579 1.2e-69 266.9 176 79.5
THA.LOC104806922 Tarenaya hassleriana HOM05D006068 ORTHO05D007579 1.2e-69 266.9 177 81.4
unitig_82.g27117 Utricularia gibba HOM05D006068 ORTHO05D007579 1.2e-69 266.9 176 79.5
PSO541G0168 Papaver somniferum HOM05D006068 ORTHO05D007579 1.5e-69 266.5 176 77.8
AT1G63610 Arabidopsis thaliana HOM05D006068 ORTHO05D007579 2.6e-69 265.8 177 80.2
Glyma.06G018500 Glycine max HOM05D006068 ORTHO05D007579 3.4e-69 265.4 172 82.6
Sabra02G0008300 Salix brachista HOM05D006068 ORTHO05D007579 3.4e-69 265.4 176 79.0
TAR625G0587 Trochodendron aralioides HOM05D006068 ORTHO05D007579 4.5e-69 265.0 176 78.4
HanXRQChr14g0428291 Helianthus annuus HOM05D006068 ORTHO05D007579 5.8e-69 264.6 172 81.4
PGR031G3964 Punica granatum HOM05D006068 ORTHO05D007579 7.6e-69 264.2 176 79.0
AL2G11620 Arabidopsis lyrata HOM05D006068 ORTHO05D007579 9.9e-69 263.8 177 79.1
Lj4A11G71 Lonicera japonica HOM05D006068 ORTHO05D007579 9.9e-69 263.8 176 77.3
ATR0661G354 Amborella trichopoda HOM05D006068 ORTHO05D007579 1.3e-68 263.5 176 77.3
Carub.0002s0126 Capsella rubella HOM05D006068 ORTHO05D007579 1.3e-68 263.5 177 79.7
Aqoxy6G01735 Aquilegia oxysepala HOM05D006068 ORTHO05D007579 1.7e-68 263.1 176 77.8
CAN.G311.112 Capsicum annuum HOM05D006068 ORTHO05D007579 1.7e-68 263.1 176 77.8
Cc10_g00700 Coffea canephora HOM05D006068 ORTHO05D007579 2.2e-68 262.7 176 76.7
Solyc04g082310.3 Solanum lycopersicum HOM05D006068 ORTHO05D007579 2.2e-68 262.7 176 77.3
Sopen04g035930 Solanum pennellii HOM05D006068 ORTHO05D007579 2.2e-68 262.7 176 77.3
CsaV3_6G031610 Cucumis sativus L. HOM05D006068 ORTHO05D007579 2.9e-68 262.3 176 79.0
MELO3C026542.2 Cucumis melo HOM05D006068 ORTHO05D007579 4.9e-68 261.5 176 79.5
PGSC0003DMG400009901 Solanum tuberosum HOM05D006068 ORTHO05D007579 4.9e-68 261.5 176 76.7
ECA238G2626 Erigeron canadensis HOM05D006068 ORTHO05D007579 8.4e-68 260.8 177 78.5
Peaxi162Scf00893g00430 Petunia axillaris HOM05D006068 ORTHO05D007579 1.1e-67 260.4 176 76.1
Sp7g08270 Schrenkiella parvula HOM05D006068 ORTHO05D007579 1.1e-67 260.4 179 79.3
EL10Ac1g01974 Beta vulgaris HOM05D006068 ORTHO05D007579 1.4e-67 260.0 176 76.1
CDE07G1082 Ceratophyllum demersum HOM05D006068 ORTHO05D007579 1.4e-67 260.0 176 75.0
Nitab4.5_0000588g0170 Nicotiana tabacum HOM05D006068 ORTHO05D007579 1.9e-67 259.6 176 76.1
CDE06G2200 Ceratophyllum demersum HOM05D006068 ORTHO05D007579 1.2e-66 256.9 177 77.4
TWI56G1411 Tripterygium wilfordii HOM05D006068 ORTHO05D007579 1.6e-66 256.5 176 74.4
Haze_22761 Corylus avellana HOM05D006068 ORTHO05D007579 2.7e-66 255.8 176 79.0
BcaC03g16456 Brassica carinata HOM05D006068 ORTHO05D007579 3.5e-66 255.4 179 77.1
Hund05115 Selenicereus undatus HOM05D006068 ORTHO05D007579 3.5e-66 255.4 176 78.4
Eucgr.F03551 Eucalyptus grandis HOM05D006068 ORTHO05D007579 3.9e-65 251.9 176 75.0
DCAR_023009 Daucus carota HOM05D006068 ORTHO05D007579 6.7e-65 251.1 176 76.7
SGA_v2.0_scaffold108G30857 Striga asiatica HOM05D006068 ORTHO05D007579 1.9e-64 249.6 203 68.5
SGA_v2.0_scaffold275G46600 Striga asiatica HOM05D006068 ORTHO05D007579 1.9e-64 249.6 215 66.0
BcaC06g31004 Brassica carinata HOM05D006068 ORTHO05D007579 3.3e-64 248.8 180 74.4
HPP92_025498 Vanilla planifolia HOM05D006068 ORTHO05D007579 7.4e-64 247.7 176 73.3
A02p27010 Brassica napus HOM05D006068 ORTHO05D007579 9.6e-64 247.3 190 73.2
BraA02t07716Z Brassica rapa HOM05D006068 ORTHO05D007579 9.6e-64 247.3 190 73.2
C02p42740 Brassica napus HOM05D006068 ORTHO05D007579 1.3e-63 246.9 190 72.6
BolC2t10310H Brassica oleracea HOM05D006068 ORTHO05D007579 1.3e-63 246.9 190 72.6
Lj6A2T21 Lonicera japonica HOM05D006068 ORTHO05D007579 2.1e-63 246.1 227 60.8
HPP92_025539 Vanilla planifolia HOM05D006068 ORTHO05D007579 2.8e-63 245.7 176 72.7
Os02g0833400 Oryza sativa ssp. japonica HOM05D006068 ORTHO05D007579 1.8e-62 243.0 176 70.5
Zm00001eb190500 Zea mays HOM05D006068 ORTHO05D007579 3.1e-62 242.3 176 72.7
MD15G1002300 Malus domestica HOM05D006068 ORTHO05D007579 4.9e-60 235.0 206 66.5
SHI07998 Sapria himalayana HOM05D006068 ORTHO05D007579 1.6e-58 229.9 176 69.9
Ah.11g041010 Amaranthus hybridus HOM05D006068 ORTHO05D007579 7.9e-58 227.6 158 75.9
TAR381G1212 Trochodendron aralioides HOM05D006068 ORTHO05D007579 2.5e-56 222.6 141 81.6
Lsat_1_v5_gn_2_6520 Lactuca sativa HOM05D006068 ORTHO05D007579 5.6e-56 221.5 143 80.4
Aa31LG9G12420 Aethionema arabicum HOM05D006068 ORTHO05D007579 1.3e-52 210.3 177 67.8
AagrBONN_evm.TU.Sc2ySwM_344.4662 Anthoceros agrestis HOM05D006068 ORTHO05D007579 1.7e-52 209.9 173 62.4
Mapoly0020s0031 Marchantia polymorpha HOM05D006068 ORTHO05D007579 1.7e-52 209.9 173 62.4
Pp3c7_4160 Physcomitrium patens HOM05D006068 ORTHO05D007579 2.5e-51 206.1 172 62.8
Pp3c7_4165 Physcomitrium patens HOM05D006068 ORTHO05D007579 2.5e-51 206.1 172 62.8
AagrBONN_evm.TU.Sc2ySwM_117.403 Anthoceros agrestis HOM05D006068 ORTHO05D007579 7.1e-51 204.5 173 60.7
vmacro21818 Vaccinium macrocarpon HOM05D006068 ORTHO05D007579 1.2e-50 203.8 171 67.8
COL.COLO4_04004 Corchorus olitorius HOM05D006068 ORTHO05D007579 2.7e-50 202.6 177 66.1
Pp3c11_22560 Physcomitrium patens HOM05D006068 ORTHO05D007579 3.5e-50 202.2 172 61.6
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 6.0e-50 201.4 171 57.9
CBR_g12699 Chara braunii HOM05D006068 ORTHO05D007579 7.9e-50 201.1 180 58.9
Dinv31935 Davidia involucrata HOM05D006068 ORTHO05D007579 4.5e-45 185.3 176 61.4
ClCG08G009470 Citrullus lanatus HOM05D006068 ORTHO05D007579 7.9e-42 174.5 112 80.4
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.2e-35 152.5 133 54.9
PRCOL_00003973 Prasinoderma coloniale HOM05D006068 ORTHO05D007579 7.9e-26 121.3 239 36.4
TPR.G39477 Trifolium pratense HOM05D006068 ORTHO05D007579 1.4e-25 120.6 75 78.7
SEGI_18480 Sequoiadendron giganteum HOM05D006068 ORTHO05D007579 1.2e-16 90.9 110 49.1
AagrBONN_evm.TU.Sc2ySwM_344.2892 Anthoceros agrestis HOM05D002926 ORTHO05D003338 1.5e-08 63.9 258 27.5
Gorai.012G058500 Gossypium raimondii HOM05D002926 ORTHO05D003338 2.8e-07 59.7 213 27.2
Sp3g28360 Schrenkiella parvula HOM05D002926 ORTHO05D003338 2.8e-07 59.7 261 27.2
ATR1101G040 Amborella trichopoda HOM05D002926 ORTHO05D003338 4.8e-07 58.9 215 25.6
Gohir.D04G052300 Gossypium hirsutum HOM05D002926 ORTHO05D003338 6.3e-07 58.5 213 27.2
Gohir.A05G362100 Gossypium hirsutum HOM05D002926 ORTHO05D003338 8.3e-07 58.2 215 25.1
Thecc.04G066000 Theobroma cacao HOM05D002926 ORTHO05D003338 8.3e-07 58.2 211 27.5
Duzib147G0337 Durio zibethinus HOM05D002926 ORTHO05D003338 1.4e-06 57.4 211 27.0
Gohir.D12G057600 Gossypium hirsutum HOM05D002926 ORTHO05D003338 2.4e-06 56.6 213 28.2
AT5G14970 Arabidopsis thaliana HOM05D002926 ORTHO05D003338 4.1e-06 55.8 206 23.8
Thhalv10022715m.g Eutrema salsugineum HOM05D002926 ORTHO05D003338 4.1e-06 55.8 249 26.9
A09p10660 Brassica napus HOM05D002926 ORTHO05D003338 5.4e-06 55.5 240 25.0
Cre01.g015400 Chlamydomonas reinhardtii HOM05D006068 ORTHO05D007579 7.0e-06 55.1 90 34.4
Aa31LG11G14530 Aethionema arabicum HOM05D002926 ORTHO05D003338 9.1e-06 54.7 208 22.1
BraA09t36708Z Brassica rapa HOM05D002926 ORTHO05D003338 9.1e-06 54.7 240 24.6
Carub.0003s2892 Capsella rubella HOM05D002926 ORTHO05D003338 9.1e-06 54.7 225 27.6
CDE04G1510 Ceratophyllum demersum HOM05D002926 ORTHO05D003338 9.1e-06 54.7 217 25.3
Potri.001G298200 Populus trichocarpa HOM05D002926 ORTHO05D003338 9.1e-06 54.7 238 23.5


User provided reference genes

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