Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0270181 Rosa chinensis HOM05D000650 ORTHO05D007302 3.2e-136 488.4 245 100.0
RcHm_v2.0_Chr6g0270191 Rosa chinensis HOM05D000650 ORTHO05D007302 1.6e-87 326.6 277 66.4
RcHm_v2.0_Chr6g0270171 Rosa chinensis HOM05D000650 ORTHO05D007302 2.5e-40 169.9 177 57.6
RcHm_v2.0_Chr6g0270081 Rosa chinensis HOM05D000650 ORTHO05D007302 2.0e-37 160.2 136 63.2
RcHm_v2.0_Chr6g0270121 Rosa chinensis HOM05D000650 ORTHO05D007302 9.8e-37 157.9 245 42.4
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 1.9e-32 143.7 120 63.3
FvH4_2g11450 Fragaria vesca HOM05D000650 ORTHO05D007302 3.3e-32 142.9 103 68.9
FvH4_2g11420 Fragaria vesca HOM05D000650 ORTHO05D007302 7.3e-32 141.7 136 54.4
FAN24G3507 Fragaria x ananassa HOM05D000650 ORTHO05D007302 9.5e-32 141.4 136 54.4
FAN27G0840 Fragaria x ananassa HOM05D000650 ORTHO05D007302 4.4e-29 132.5 132 53.8
FAN20G2101 Fragaria x ananassa HOM05D000650 ORTHO05D007302 3.7e-28 129.4 103 60.2
FAN20G2154 Fragaria x ananassa HOM05D003426 ORTHO05D007302 1.9e-27 127.1 103 63.1
FAN15G2135 Fragaria x ananassa HOM05D000650 ORTHO05D007302 2.7e-26 123.2 88 67.0
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 6.8e-22 108.6 241 36.5
Prupe.8G072900 Prunus persica HOM05D000650 ORTHO05D007302 1.1e-19 101.3 138 47.8
Haze_10691 Corylus avellana HOM05D000650 ORTHO05D007302 5.1e-17 92.4 241 33.6
Prupe.8G072500 Prunus persica HOM05D000650 ORTHO05D007302 7.3e-16 88.6 146 39.0
Haze_10689 Corylus avellana HOM05D000650 ORTHO05D007302 2.8e-15 86.7 241 33.6
Prupe.8G073000 Prunus persica HOM05D000650 ORTHO05D007302 6.9e-14 82.0 108 47.2
Manes.07G043000 Manihot esculenta HOM05D000650 ORTHO05D007302 4.4e-13 79.3 227 29.1
QL11p025849 Quercus lobata HOM05D000650 ORTHO05D007302 1.7e-12 77.4 80 52.5
QL11p029380 Quercus lobata HOM05D000650 ORTHO05D007302 2.9e-12 76.6 180 33.9
CAN.G531.4 Capsicum annuum HOM05D000650 ORTHO05D007302 4.9e-12 75.9 225 30.7
Manes.07G043100 Manihot esculenta HOM05D000650 ORTHO05D015160 8.4e-12 75.1 227 29.5
TAR625G0834 Trochodendron aralioides HOM05D000650 ORTHO05D000735 1.4e-11 74.3 82 46.3
Sopen10g018090 Solanum pennellii HOM05D000650 ORTHO05D007302 3.2e-11 73.2 222 31.1
Manes.10G096200 Manihot esculenta HOM05D000650 ORTHO05D014428 4.2e-11 72.8 235 28.1
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 9.3e-11 71.6 162 32.1
Thecc.02G127100 Theobroma cacao HOM05D000650 ORTHO05D007302 1.2e-10 71.2 111 42.3
TWI14G0488 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 1.2e-10 71.2 113 41.6
TWI59G0327 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 1.2e-10 71.2 111 38.7
Psat7g102080 Pisum sativum HOM05D000650 ORTHO05D007302 1.6e-10 70.9 229 29.3
Medtr4g093510 Medicago truncatula HOM05D000650 ORTHO05D007302 2.1e-10 70.5 234 29.9
COL.COLO4_32414 Corchorus olitorius HOM05D000650 ORTHO05D007302 2.7e-10 70.1 67 53.7
Medtr4g093260 Medicago truncatula HOM05D000650 ORTHO05D007302 4.6e-10 69.3 283 27.2
Haze_10696 Corylus avellana HOM05D000650 ORTHO05D007302 1.0e-09 68.2 79 46.8
Solyc10g047670.2 Solanum lycopersicum HOM05D000650 ORTHO05D007302 1.3e-09 67.8 177 34.5
Gorai.005G226700 Gossypium raimondii HOM05D000650 ORTHO05D007302 1.7e-09 67.4 96 43.8
Nn1g05634 Nelumbo nucifera HOM05D000650 ORTHO05D000735 3.0e-09 66.6 256 26.6
TAR625G0371 Trochodendron aralioides HOM05D000650 ORTHO05D000735 3.0e-09 66.6 70 47.1
CSS0023548 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D007302 5.1e-09 65.9 121 40.5
Gohir.A03G178000 Gossypium hirsutum HOM05D000650 ORTHO05D007302 1.1e-08 64.7 96 41.7
Nitab4.5_0004586g0040 Nicotiana tabacum HOM05D000650 ORTHO05D007302 1.1e-08 64.7 226 31.0
Nitab4.5_0004586g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 1.5e-08 64.3 223 29.1
Oeu063550.2 Olea europaea HOM05D000650 ORTHO05D007302 1.9e-08 63.9 185 29.7
TAR381G0504 Trochodendron aralioides HOM05D000650 ORTHO05D000735 1.9e-08 63.9 101 35.6
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 2.5e-08 63.5 155 30.3
Glyma.08G066700 Glycine max HOM05D000650 ORTHO05D007302 3.3e-08 63.2 71 45.1
Potri.001G283000 Populus trichocarpa HOM05D000650 ORTHO05D007302 3.3e-08 63.2 60 50.0
Dinv24138 Davidia involucrata HOM05D000650 ORTHO05D007302 4.3e-08 62.8 149 30.2
Gohir.D02G201700 Gossypium hirsutum HOM05D000650 ORTHO05D007302 4.3e-08 62.8 77 45.5
Atru.chr6.1308 Acer truncatum HOM05D000650 ORTHO05D007302 5.6e-08 62.4 73 49.3
Duzib248G1171 Durio zibethinus HOM05D000650 ORTHO05D007302 5.6e-08 62.4 95 43.2
Medtr4g093280 Medicago truncatula HOM05D000650 ORTHO05D007302 5.6e-08 62.4 55 52.7
PGSC0003DMG400029015 Solanum tuberosum HOM05D000650 ORTHO05D007302 5.6e-08 62.4 241 29.9
VMungo0251G0586 Vigna mungo HOM05D000650 ORTHO05D007302 7.3e-08 62.0 78 44.9
CSS0029976 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 9.6e-08 61.6 109 38.5
DCAR_001849 Daucus carota HOM05D000650 ORTHO05D007302 9.6e-08 61.6 261 27.6
Prupe.8G072600 Prunus persica HOM05D000650 ORTHO05D007302 9.6e-08 61.6 122 36.1
Ca_18401_v3 Cicer arietinum L. HOM05D000650 ORTHO05D007302 1.3e-07 61.2 133 34.6
Lj4g0012325 Lotus japonicus HOM05D000650 ORTHO05D007302 1.3e-07 61.2 77 42.9
Psat7g102120 Pisum sativum HOM05D000650 ORTHO05D007302 1.6e-07 60.8 48 60.4
QL93p2010_0074 Quercus lobata HOM05D066031 ORTHO05D017106 1.6e-07 60.8 81 43.2
Haze_10697 Corylus avellana HOM05D000650 ORTHO05D007302 2.1e-07 60.5 85 45.9
Lj4g0020470 Lotus japonicus HOM05D000650 ORTHO05D007302 2.1e-07 60.5 57 50.9
Nitab4.5_0014595g0010 Nicotiana tabacum HOM05D000650 ORTHO05D007302 2.8e-07 60.1 221 30.3
Sabra16G0176300 Salix brachista HOM05D000650 ORTHO05D007302 2.8e-07 60.1 59 50.8
CSS0041479 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 3.6e-07 59.7 227 25.6
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 3.6e-07 59.7 101 41.6
Rhsim11G0142600 Rhododendron simsii HOM05D002143 ORTHO05D338981 4.8e-07 59.3 69 46.4
Lj4g0018033 Lotus japonicus HOM05D000650 ORTHO05D007302 8.1e-07 58.5 100 38.0
vmacro01871 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 8.1e-07 58.5 142 33.8
Atru.chr6.1309 Acer truncatum HOM05D000650 ORTHO05D007302 1.1e-06 58.2 285 26.7
GSVIVG01012543001 Vitis vinifera HOM05D000650 ORTHO05D007302 1.1e-06 58.2 74 45.9
Duzib132G0086 Durio zibethinus HOM05D000650 ORTHO05D007302 1.4e-06 57.8 117 37.6
Lj4g0020146 Lotus japonicus HOM05D000650 ORTHO05D007302 1.4e-06 57.8 85 40.0
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 1.4e-06 57.8 100 45.0
GSVIVG01000331001 Vitis vinifera HOM05D000650 ORTHO05D007302 1.4e-06 57.8 83 42.2
Sabra09G0060100 Salix brachista HOM05D000650 ORTHO05D007302 1.8e-06 57.4 69 44.9
Lj5A228T44 Lonicera japonica HOM05D003426 ORTHO05D007302 2.4e-06 57.0 146 28.1
SalBow6G1286 Salvia bowleyana HOM05D000650 ORTHO05D007302 2.4e-06 57.0 229 24.9
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 3.1e-06 56.6 117 40.2
DCAR_029285 Daucus carota HOM05D000650 ORTHO05D007302 3.1e-06 56.6 169 30.2
GSVIVG01000320001 Vitis vinifera HOM05D000650 ORTHO05D007302 3.1e-06 56.6 74 43.2
GSVIVG01000328001 Vitis vinifera HOM05D000650 ORTHO05D007302 3.1e-06 56.6 97 39.2
COL.COLO4_32413 Corchorus olitorius HOM05D000027 ORTHO05D001579 4.0e-06 56.2 67 49.3
QL11p029412 Quercus lobata HOM05D000650 ORTHO05D007302 4.0e-06 56.2 92 39.1
Aqoxy6G00817_Aqoxy6G00818 Aquilegia oxysepala HOM05D000650 ORTHO05D010020 5.3e-06 55.8 42 57.1
Manes.10G096300 Manihot esculenta HOM05D000650 ORTHO05D007302 5.3e-06 55.8 37 62.2
CANSAT54G0504 Cannabis sativa HOM05D000650 ORTHO05D007302 6.9e-06 55.5 67 41.8
Lj5A228T42 Lonicera japonica HOM05D000650 ORTHO05D007302 6.9e-06 55.5 126 28.6
Peaxi162Scf00003g03237 Petunia axillaris HOM05D021013 ORTHO05D007302 6.9e-06 55.5 49 51.0
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 6.9e-06 55.5 62 45.2
Psat7g102160 Pisum sativum HOM05D000650 ORTHO05D007302 6.9e-06 55.5 53 50.9
Atru.chr6.1306 Acer truncatum HOM05D000650 ORTHO05D007302 9.0e-06 55.1 132 34.1


User provided reference genes

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