Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0270111 Rosa chinensis HOM05D000198 ORTHO05D029541 2.8e-41 171.4 80 100.0
MD09G1234200 Malus domestica HOM05D000198 ORTHO05D003232 3.6e-12 74.7 39 87.2
Prupe.8G073100 Prunus persica HOM05D000198 ORTHO05D003232 3.6e-12 74.7 39 87.2
FvH4_2g11410 Fragaria vesca HOM05D000198 ORTHO05D003232 1.4e-11 72.8 39 84.6
FAN15G2690 Fragaria x ananassa HOM05D000198 ORTHO05D003232 1.4e-11 72.8 39 84.6
FAN27G0661 Fragaria x ananassa HOM05D000198 ORTHO05D003232 1.4e-11 72.8 39 84.6
CANSAT54G2710 Cannabis sativa HOM05D000198 ORTHO05D003232 5.2e-11 70.9 39 82.1
RcHm_v2.0_Chr6g0270141 Rosa chinensis HOM05D000198 ORTHO05D003232 5.2e-11 70.9 39 82.1
FAN20G0852 Fragaria x ananassa HOM05D000198 ORTHO05D003232 6.7e-11 70.5 39 82.1
Gohir.D02G201800 Gossypium hirsutum HOM05D000198 ORTHO05D003232 8.8e-11 70.1 38 84.2
Gorai.005G226800 Gossypium raimondii HOM05D000198 ORTHO05D003232 8.8e-11 70.1 38 84.2
Cfa004831 Carpinus fangiana HOM05D000198 ORTHO05D003232 1.1e-10 69.7 39 79.5
CiPaw.06G159100 Carya illinoinensis HOM05D000198 ORTHO05D003232 1.1e-10 69.7 39 79.5
Haze_10483 Corylus avellana HOM05D000198 ORTHO05D003232 1.1e-10 69.7 39 79.5
Haze_10485 Corylus avellana HOM05D001661 ORTHO05D003232 1.1e-10 69.7 39 79.5
HanXRQChr10g0319951 Helianthus annuus HOM05D000198 ORTHO05D003232 1.1e-10 69.7 39 79.5
Lsat_1_v5_gn_7_83520 Lactuca sativa HOM05D000198 ORTHO05D003232 1.1e-10 69.7 39 79.5
Potri.001G242333 Populus trichocarpa HOM05D000198 ORTHO05D003232 1.5e-10 69.3 39 76.9
Potri.001G283100 Populus trichocarpa HOM05D000198 ORTHO05D003232 1.5e-10 69.3 39 76.9
Potri.009G078600 Populus trichocarpa HOM05D000198 ORTHO05D003232 1.5e-10 69.3 39 76.9
Sabra09G0060500 Salix brachista HOM05D000198 ORTHO05D003232 1.5e-10 69.3 39 76.9
Gohir.A03G178100 Gossypium hirsutum HOM05D000198 ORTHO05D003232 2.0e-10 68.9 38 81.6
TWI59G0572 Tripterygium wilfordii HOM05D000198 ORTHO05D003232 2.0e-10 68.9 38 81.6
Ciclev10028171m.g Citrus clementina HOM05D000198 ORTHO05D003232 2.6e-10 68.6 39 76.9
Aa31LG8G12610 Aethionema arabicum HOM05D000198 ORTHO05D003232 3.3e-10 68.2 38 78.9
QL11p025875 Quercus lobata HOM05D000198 ORTHO05D003232 3.3e-10 68.2 38 81.6
Sed0006698 Sechium edule HOM05D000198 ORTHO05D003232 3.3e-10 68.2 39 79.5
SEGI_13238 Sequoiadendron giganteum HOM05D000198 ORTHO05D003232 3.3e-10 68.2 35 82.9
SEGI_25814 Sequoiadendron giganteum HOM05D000198 ORTHO05D003232 3.3e-10 68.2 35 82.9
MBI16_g30310_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D003232 4.4e-10 67.8 40 75.0
Manes.10G095900 Manihot esculenta HOM05D000198 ORTHO05D003232 4.4e-10 67.8 38 78.9
AL3G45850 Arabidopsis lyrata HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
AT2G14170 Arabidopsis thaliana HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
BcaB02g11529 Brassica carinata HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
BcaC04g23076 Brassica carinata HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
A09p10440 Brassica napus HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
C09p12380 Brassica napus HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
BolC9t54132H Brassica oleracea HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
BraA09t36690Z Brassica rapa HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
Carub.0003s2839 Capsella rubella HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
CAN.G504.81 Capsicum annuum HOM05D000198 ORTHO05D003232 5.7e-10 67.4 39 76.9
CARHR105360 Cardamine hirsuta HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
Thhalv10022637m.g Eutrema salsugineum HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
Lalb_Chr16g0383021 Lupinus albus HOM05D000198 ORTHO05D003232 5.7e-10 67.4 39 79.5
Sp3g27540 Schrenkiella parvula HOM05D000198 ORTHO05D003232 5.7e-10 67.4 38 78.9
ATR0767G178 Amborella trichopoda HOM05D000198 ORTHO05D003232 7.5e-10 67.0 40 72.5
Cpa.g.sc20.27 Carica papaya HOM05D000198 ORTHO05D003232 7.5e-10 67.0 38 78.9
DCAR_021901 Daucus carota HOM05D000198 ORTHO05D003232 7.5e-10 67.0 38 78.9
ECA236G0693 Erigeron canadensis HOM05D000198 ORTHO05D003232 7.5e-10 67.0 38 78.9
Eucgr.I02606 Eucalyptus grandis HOM05D000198 ORTHO05D003232 7.5e-10 67.0 38 78.9
Nitab4.5_0005908g0070 Nicotiana tabacum HOM05D000198 ORTHO05D003232 7.5e-10 67.0 39 74.4
Peaxi162Scf00299g00337 Petunia axillaris HOM05D000198 ORTHO05D003232 7.5e-10 67.0 39 74.4
COL.COLO4_32416 Corchorus olitorius HOM05D000198 ORTHO05D003232 9.7e-10 66.6 38 76.3
Duzib248G0436 Durio zibethinus HOM05D000198 ORTHO05D003232 9.7e-10 66.6 38 78.9
Psat7g102040 Pisum sativum HOM05D000198 ORTHO05D003232 9.7e-10 66.6 39 76.9
TPR.G16887 Trifolium pratense HOM05D000198 ORTHO05D003232 9.7e-10 66.6 39 76.9
Actinidia02403 Actinidia chinensis HOM05D000198 ORTHO05D003232 1.3e-09 66.2 39 74.4
Manes.07G043200 Manihot esculenta HOM05D000198 ORTHO05D003232 1.3e-09 66.2 38 76.3
PGR142G3825 Punica granatum HOM05D000198 ORTHO05D003232 1.3e-09 66.2 39 74.4
CSS0012870 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D003232 1.7e-09 65.9 39 71.8
Migut.B00536 Erythranthe guttata HOM05D000198 ORTHO05D003232 1.7e-09 65.9 38 78.9
Glyma.08G066600 Glycine max HOM05D000198 ORTHO05D003232 1.7e-09 65.9 39 74.4
Lj9A347G45 Lonicera japonica HOM05D000198 ORTHO05D003232 1.7e-09 65.9 38 76.3
Phvul.002G214700 Phaseolus vulgaris HOM05D000198 ORTHO05D003232 1.7e-09 65.9 39 74.4
Hund06473 Selenicereus undatus HOM05D000198 ORTHO05D003232 1.7e-09 65.9 38 76.3
Sc08g0004000 Simmondsia chinensis HOM05D000198 ORTHO05D003232 1.7e-09 65.9 38 76.3
Ca_18402_v3 Cicer arietinum L. HOM05D000198 ORTHO05D003232 2.2e-09 65.5 39 74.4
MELO3C018583.2 Cucumis melo HOM05D000198 ORTHO05D003232 2.2e-09 65.5 39 76.9
CsaV3_7G007110 Cucumis sativus L. HOM05D000198 ORTHO05D003232 2.2e-09 65.5 39 76.9
Medtr4g093170 Medicago truncatula HOM05D000198 ORTHO05D003232 2.2e-09 65.5 39 74.4
VMungo0251G3704 Vigna mungo HOM05D000198 ORTHO05D003232 2.2e-09 65.5 37 78.4
AUR62027094 Chenopodium quinoa HOM05D000198 ORTHO05D003232 2.8e-09 65.1 41 70.7
AUR62030936 Chenopodium quinoa HOM05D000198 ORTHO05D003232 2.8e-09 65.1 41 70.7
Dinv08986 Davidia involucrata HOM05D000198 ORTHO05D003232 2.8e-09 65.1 38 76.3
Dinv16011 Davidia involucrata HOM05D000198 ORTHO05D003232 2.8e-09 65.1 38 76.3
AagrBONN_evm.TU.Sc2ySwM_344.369 Anthoceros agrestis HOM05D000198 ORTHO05D003232 3.7e-09 64.7 40 72.5
Lj6g0025328 Lotus japonicus HOM05D000198 ORTHO05D003232 3.7e-09 64.7 35 82.9
Os07g0188800 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D003232 3.7e-09 64.7 43 69.8
SGA_v2.0_scaffold83G26388 Striga asiatica HOM05D000198 ORTHO05D003232 3.7e-09 64.7 38 76.3
unitig_744.g24192 Utricularia gibba HOM05D000198 ORTHO05D003232 3.7e-09 64.7 38 76.3
ClCG09G016250 Citrullus lanatus HOM05D000198 ORTHO05D003232 4.8e-09 64.3 42 69.0
Glyma.15G058900 Glycine max HOM05D000198 ORTHO05D003232 4.8e-09 64.3 36 80.6
Lalb_Chr09g0326971 Lupinus albus HOM05D000198 ORTHO05D003232 4.8e-09 64.3 36 80.6
Nitab4.5_0002750g0040 Nicotiana tabacum HOM05D000198 ORTHO05D003232 4.8e-09 64.3 38 73.7
PGSC0003DMG402010673 Solanum tuberosum HOM05D000198 ORTHO05D003232 4.8e-09 64.3 39 74.4
Ah.01g007330 Amaranthus hybridus HOM05D000198 ORTHO05D003232 6.3e-09 63.9 38 73.7
arahy.Tifrunner.gnm1.ann1.HY8A1I Arachis hypogaea HOM05D000198 ORTHO05D003232 6.3e-09 63.9 36 77.8
arahy.Tifrunner.gnm1.ann1.WZ366M Arachis hypogaea HOM05D000198 ORTHO05D003232 6.3e-09 63.9 36 77.8
Cc02_g20750 Coffea canephora HOM05D000198 ORTHO05D003232 8.2e-09 63.5 38 73.7
PSO170G4491 Papaver somniferum HOM05D000198 ORTHO05D003232 8.2e-09 63.5 35 77.1
PSO210G4739 Papaver somniferum HOM05D000198 ORTHO05D003232 8.2e-09 63.5 35 77.1
SalBow6G4707 Salvia bowleyana HOM05D000198 ORTHO05D003232 8.2e-09 63.5 39 71.8
Thecc.02G127000 Theobroma cacao HOM05D000198 ORTHO05D003232 8.2e-09 63.5 38 76.3
Lj4g0014003 Lotus japonicus HOM05D000198 ORTHO05D003232 1.1e-08 63.2 39 69.2
Lj4g0015874 Lotus japonicus HOM05D000198 ORTHO05D003232 1.1e-08 63.2 39 69.2
TAR006G0002 Trochodendron aralioides HOM05D000198 ORTHO05D003232 1.1e-08 63.2 40 67.5
vmacro01879 Vaccinium macrocarpon HOM05D000198 ORTHO05D003232 1.1e-08 63.2 38 71.1
AUR62030934 Chenopodium quinoa HOM05D000198 ORTHO05D003232 1.4e-08 62.8 38 71.1
Zm00001eb302330 Zea mays HOM05D000198 ORTHO05D003232 1.4e-08 62.8 38 73.7
EL10Ac9g22113 Beta vulgaris HOM05D000198 ORTHO05D003232 1.8e-08 62.4 38 71.1
THA.LOC104807185 Tarenaya hassleriana HOM05D000198 ORTHO05D003232 1.8e-08 62.4 38 73.7
TPR.G9502 Trifolium pratense HOM05D000198 ORTHO05D003232 1.8e-08 62.4 36 77.8
Medtr2g009750 Medicago truncatula HOM05D000198 ORTHO05D003232 2.4e-08 62.0 36 75.0
Psat1g214320 Pisum sativum HOM05D000198 ORTHO05D003232 2.4e-08 62.0 36 75.0
vmacro19605 Vaccinium macrocarpon HOM05D000198 ORTHO05D003232 2.4e-08 62.0 38 65.8
Aqoxy5G01344 Aquilegia oxysepala HOM05D000198 ORTHO05D003232 3.1e-08 61.6 37 75.7
MSTRG.20269 Avicennia marina HOM05D000198 ORTHO05D003232 3.1e-08 61.6 39 71.8
CDE02G1724 Ceratophyllum demersum HOM05D000198 ORTHO05D003232 4.1e-08 61.2 37 73.0
RcHm_v2.0_Chr6g0270071 Rosa chinensis HOM05D000198 ORTHO05D029541 4.1e-08 61.2 34 82.4
SMO130G0001 Selaginella moellendorffii HOM05D000198 ORTHO05D003232 4.1e-08 61.2 39 66.7
SMO351G0440 Selaginella moellendorffii HOM05D000198 ORTHO05D003232 4.1e-08 61.2 39 66.7
GSVIVG01000336001 Vitis vinifera HOM05D000198 ORTHO05D003232 4.1e-08 61.2 37 75.7
Cfa004830 Carpinus fangiana HOM05D000198 ORTHO05D003232 5.3e-08 60.8 39 69.2
Rhsim11G0141000 Rhododendron simsii HOM05D000198 ORTHO05D003232 5.3e-08 60.8 38 68.4
Cc07_g13850 Coffea canephora HOM05D000198 ORTHO05D003232 7.0e-08 60.5 43 65.1
Haze_03902 Corylus avellana HOM05D000198 ORTHO05D003232 7.0e-08 60.5 43 62.8
Solyc01g106080.4 Solanum lycopersicum HOM05D000198 ORTHO05D003232 9.1e-08 60.1 37 73.0
Sopen01g048470 Solanum pennellii HOM05D000198 ORTHO05D003232 9.1e-08 60.1 37 73.0
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 1.2e-07 59.7 40 67.5
CiPaw.08G142700 Carya illinoinensis HOM05D000198 ORTHO05D003232 1.6e-07 59.3 38 71.1
SalBow6G1337 Salvia bowleyana HOM05D000198 ORTHO05D003232 1.6e-07 59.3 38 65.8
SalBow6G5919 Salvia bowleyana HOM05D000198 ORTHO05D003232 1.6e-07 59.3 38 65.8
SHI04924 Sapria himalayana HOM05D000198 ORTHO05D003232 1.6e-07 59.3 38 65.8
Cfa006862 Carpinus fangiana HOM05D000198 ORTHO05D003232 2.0e-07 58.9 38 68.4
Ciclev10030282m.g Citrus clementina HOM05D000198 ORTHO05D003232 2.0e-07 58.9 37 67.6
Cc02_g20740 Coffea canephora HOM05D000198 ORTHO05D003232 2.0e-07 58.9 36 72.2
Haze_10482 Corylus avellana HOM05D000198 ORTHO05D003232 2.0e-07 58.9 39 66.7
Dinv27018 Davidia involucrata HOM05D000198 ORTHO05D003232 2.0e-07 58.9 43 62.8
Dinv36957 Davidia involucrata HOM05D000198 ORTHO05D003232 2.0e-07 58.9 43 62.8
Dinv16012 Davidia involucrata HOM05D000198 ORTHO05D003232 2.7e-07 58.5 36 69.4
Pp3c21_4880 Physcomitrium patens HOM05D000198 ORTHO05D003232 2.7e-07 58.5 35 74.3
QL11p025893 Quercus lobata HOM05D000198 ORTHO05D003232 2.7e-07 58.5 39 66.7
CiPaw.05G028200 Carya illinoinensis HOM05D000198 ORTHO05D003232 3.5e-07 58.2 39 69.2
Lj5C228T6 Lonicera japonica HOM05D000198 ORTHO05D003232 3.5e-07 58.2 36 69.4
Actinidia04554 Actinidia chinensis HOM05D000198 ORTHO05D003232 4.5e-07 57.8 38 65.8
Actinidia28022 Actinidia chinensis HOM05D000198 ORTHO05D003232 5.9e-07 57.4 34 70.6
Mapoly0140s0014 Marchantia polymorpha HOM05D000198 ORTHO05D003232 5.9e-07 57.4 43 62.8
Oeu014201.2 Olea europaea HOM05D000198 ORTHO05D003232 5.9e-07 57.4 38 68.4
RcHm_v2.0_Chr6g0270041 Rosa chinensis HOM05D000198 ORTHO05D003232 5.9e-07 57.4 36 66.7
Duzib248G1327 Durio zibethinus HOM05D000198 ORTHO05D003232 7.7e-07 57.0 39 64.1
Oeu032330.2 Olea europaea HOM05D000198 ORTHO05D003232 7.7e-07 57.0 41 61.0
Oeu063552.2 Olea europaea HOM05D000198 ORTHO05D003232 7.7e-07 57.0 39 64.1
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 1.0e-06 56.6 40 62.5
Manes.10G095800 Manihot esculenta HOM05D000198 ORTHO05D003232 1.0e-06 56.6 36 66.7
vmacro01880 Vaccinium macrocarpon HOM05D000198 ORTHO05D003232 1.0e-06 56.6 36 72.2
QL06p036372 Quercus lobata HOM05D000198 ORTHO05D003232 1.7e-06 55.8 38 65.8
SGA_v2.0_scaffold32G12937 Striga asiatica HOM05D000198 ORTHO05D003232 1.7e-06 55.8 40 55.0
Manes.13G101900 Manihot esculenta HOM05D000198 ORTHO05D003232 2.2e-06 55.5 37 64.9
CSS0023639 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D003232 2.9e-06 55.1 36 69.4
DCAR_001847 Daucus carota HOM05D000198 ORTHO05D003232 2.9e-06 55.1 37 64.9
Duzib264G0805 Durio zibethinus HOM05D000198 ORTHO05D003232 2.9e-06 55.1 38 65.8
MD15G1309700 Malus domestica HOM05D000198 ORTHO05D003232 2.9e-06 55.1 38 63.2
Prupe.6G205000 Prunus persica HOM05D000198 ORTHO05D003232 2.9e-06 55.1 38 65.8
Atru.chr6.1316 Acer truncatum HOM05D000198 ORTHO05D003232 3.8e-06 54.7 37 62.2
CSS0044354 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D003232 5.0e-06 54.3 41 58.5
Cpa.g.sc10.74 Carica papaya HOM05D000198 ORTHO05D003232 5.0e-06 54.3 36 61.1
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 5.0e-06 54.3 38 63.2
Thecc.02G126900 Theobroma cacao HOM05D000198 ORTHO05D003232 5.0e-06 54.3 36 66.7
MSTRG.20268 Avicennia marina HOM05D000198 ORTHO05D003232 6.5e-06 53.9 33 63.6
CBR_g29591 Chara braunii HOM05D000198 ORTHO05D003232 6.5e-06 53.9 41 61.0


User provided reference genes

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