Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0269961 Rosa chinensis HOM05D006584 ORTHO05D007640 3.1e-66 255.0 128 100.0
RcHm_v2.0_Chr5g0028711 Rosa chinensis HOM05D006584 ORTHO05D007640 1.6e-30 136.3 122 64.8
QL02p001321 Quercus lobata HOM05D006584 ORTHO05D007640 1.3e-16 90.1 153 44.4
FvH4_2g32010 Fragaria vesca HOM05D006584 ORTHO05D007640 3.8e-16 88.6 153 44.4
MD08G1043300 Malus domestica HOM05D006584 ORTHO05D007640 8.5e-16 87.4 153 43.1
Cfa017949 Carpinus fangiana HOM05D006584 ORTHO05D007640 1.1e-15 87.0 152 43.4
Prupe.1G413100 Prunus persica HOM05D006584 ORTHO05D007640 7.2e-15 84.3 153 43.1
Ciclev10008784m.g Citrus clementina HOM05D006584 ORTHO05D007640 4.7e-14 81.6 152 41.4
Dinv27980 Davidia involucrata HOM05D006584 ORTHO05D007640 4.7e-14 81.6 153 41.8
CiPaw.15G039500 Carya illinoinensis HOM05D006584 ORTHO05D007640 6.1e-14 81.3 152 40.8
RcHm_v2.0_Chr6g0310741 Rosa chinensis HOM05D006584 ORTHO05D007640 8.0e-14 80.9 62 77.4
CANSAT25G1083 Cannabis sativa HOM05D006584 ORTHO05D007640 1.0e-13 80.5 153 41.2
Carub.0006s2380 Capsella rubella HOM05D006584 ORTHO05D007640 2.3e-13 79.3 188 36.7
FAN15G2290 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.3e-13 79.3 62 75.8
FAN20G0896 Fragaria x ananassa HOM05D006584 ORTHO05D007640 2.3e-13 79.3 62 75.8
Actinidia01191 Actinidia chinensis HOM05D006584 ORTHO05D007640 6.8e-13 77.8 153 39.9
Hma1.2p1_0482F.1_g162540 Hydrangea macrophylla HOM05D006584 ORTHO05D007640 8.8e-13 77.4 151 41.7
Sabra06G0178400 Salix brachista HOM05D006584 ORTHO05D007640 1.2e-12 77.0 153 39.9
VMungo0647G2476 Vigna mungo HOM05D006584 ORTHO05D007640 1.5e-12 76.6 153 39.9
vmacro00145 Vaccinium macrocarpon HOM05D006584 ORTHO05D007640 2.6e-12 75.9 153 39.2
Rhsim11G0044500 Rhododendron simsii HOM05D006584 ORTHO05D007640 3.4e-12 75.5 153 39.2
Sed0000821 Sechium edule HOM05D006584 ORTHO05D007640 3.4e-12 75.5 188 35.6
Ca_13172_v3 Cicer arietinum L. HOM05D006584 ORTHO05D007640 4.4e-12 75.1 152 40.1
Ca_14355_v3 Cicer arietinum L. HOM05D000495 ORTHO05D007640 4.4e-12 75.1 152 40.1
Atru.chr7.1052 Acer truncatum HOM05D006584 ORTHO05D007640 5.7e-12 74.7 52 76.9
Manes.03G047600 Manihot esculenta HOM05D006584 ORTHO05D007640 5.7e-12 74.7 62 72.6
Aa31LG11G5020 Aethionema arabicum HOM05D006584 ORTHO05D007640 7.5e-12 74.3 51 78.4
Phvul.001G034500 Phaseolus vulgaris HOM05D006584 ORTHO05D007640 7.5e-12 74.3 62 69.4
CSS0009868 Camellia sinensis var. sinensis HOM05D006584 ORTHO05D007640 9.8e-12 73.9 62 67.7
CSS0020610 Camellia sinensis var. sinensis HOM05D006584 ORTHO05D007640 9.8e-12 73.9 62 67.7
PGR031G2613 Punica granatum HOM05D006584 ORTHO05D007640 9.8e-12 73.9 62 71.0
Cpa.g.sc7.166 Carica papaya HOM05D006584 ORTHO05D007640 1.3e-11 73.6 151 38.4
Hma1.2p1_0482F.1_g162550 Hydrangea macrophylla HOM05D006584 ORTHO05D007640 1.3e-11 73.6 148 40.5
Potri.006G230300 Populus trichocarpa HOM05D006584 ORTHO05D007640 1.3e-11 73.6 52 76.9
THA.LOC104811245 Tarenaya hassleriana HOM05D006584 ORTHO05D007640 1.3e-11 73.6 52 78.8
arahy.Tifrunner.gnm1.ann1.3J87F1 Arachis hypogaea HOM05D006584 ORTHO05D007640 1.7e-11 73.2 61 72.1
arahy.Tifrunner.gnm1.ann1.U8SEXI Arachis hypogaea HOM05D006584 ORTHO05D007640 1.7e-11 73.2 61 72.1
DCAR_004431 Daucus carota HOM05D006584 ORTHO05D007640 1.7e-11 73.2 152 38.2
Peaxi162Scf00477g00010 Petunia axillaris HOM05D006584 ORTHO05D007640 1.7e-11 73.2 62 69.4
CARHR187290 Cardamine hirsuta HOM05D006584 ORTHO05D007640 2.2e-11 72.8 51 76.5
Cc08_g10530 Coffea canephora HOM05D006584 ORTHO05D007640 2.2e-11 72.8 52 75.0
Medtr1g016440 Medicago truncatula HOM05D006584 ORTHO05D007640 2.2e-11 72.8 51 78.4
A06p36540 Brassica napus HOM05D006584 ORTHO05D007640 2.8e-11 72.4 51 76.5
C07p41940 Brassica napus HOM05D006584 ORTHO05D007640 2.8e-11 72.4 51 76.5
BolC7t44725H Brassica oleracea HOM05D006584 ORTHO05D007640 2.8e-11 72.4 51 76.5
BraA06t26580Z Brassica rapa HOM05D006584 ORTHO05D007640 2.8e-11 72.4 51 76.5
Glyma.17G229600 Glycine max HOM05D006584 ORTHO05D007640 2.8e-11 72.4 52 75.0
PSO832G1739 Papaver somniferum HOM05D006584 ORTHO05D007640 2.8e-11 72.4 52 76.9
TPR.G13096 Trifolium pratense HOM05D006584 ORTHO05D007640 2.8e-11 72.4 51 78.4
GSVIVG01035364001 Vitis vinifera HOM05D006584 ORTHO05D007640 2.8e-11 72.4 52 76.9
Eucgr.C00641 Eucalyptus grandis HOM05D006584 ORTHO05D007640 3.7e-11 72.0 52 75.0
Psat6g020800 Pisum sativum HOM05D006584 ORTHO05D007640 3.7e-11 72.0 151 39.1
Sp2g21680 Schrenkiella parvula HOM05D006584 ORTHO05D007640 3.7e-11 72.0 51 74.5
Solyc08g065350.4 Solanum lycopersicum HOM05D006584 ORTHO05D007640 3.7e-11 72.0 62 69.4
Sopen08g018910 Solanum pennellii HOM05D006584 ORTHO05D007640 3.7e-11 72.0 62 69.4
Migut.A00139 Erythranthe guttata HOM05D006584 ORTHO05D007640 4.8e-11 71.6 152 38.2
Lj8A547G7 Lonicera japonica HOM05D006584 ORTHO05D007640 4.8e-11 71.6 62 67.7
PGSC0003DMG400029944 Solanum tuberosum HOM05D006584 ORTHO05D007640 4.8e-11 71.6 62 67.7
CAN.G181.69 Capsicum annuum HOM05D006584 ORTHO05D007640 6.3e-11 71.2 62 66.1
Lj5g0009338 Lotus japonicus HOM05D006584 ORTHO05D007640 6.3e-11 71.2 61 70.5
Nitab4.5_0004456g0010 Nicotiana tabacum HOM05D006584 ORTHO05D007640 6.3e-11 71.2 51 74.5
ClCG05G017800 Citrullus lanatus HOM05D006584 ORTHO05D007640 8.3e-11 70.9 188 34.6
Thecc.09G053100 Theobroma cacao HOM05D006584 ORTHO05D007640 1.1e-10 70.5 52 69.2
AL6G38030 Arabidopsis lyrata HOM05D006584 ORTHO05D007640 1.4e-10 70.1 51 72.5
CsaV3_4G035570 Cucumis sativus L. HOM05D006584 ORTHO05D007640 1.4e-10 70.1 188 34.0
Thhalv10004371m.g Eutrema salsugineum HOM05D006584 ORTHO05D007640 1.4e-10 70.1 51 72.5
SEGI_11187 Sequoiadendron giganteum HOM05D006584 ORTHO05D007640 1.4e-10 70.1 51 68.6
Aqoxy7G01236 Aquilegia oxysepala HOM05D006584 ORTHO05D007640 1.8e-10 69.7 62 67.7
Mapoly0007s0200 Marchantia polymorpha HOM05D006584 ORTHO05D007640 1.8e-10 69.7 51 68.6
PSO782G5661 Papaver somniferum HOM05D006584 ORTHO05D007640 1.8e-10 69.7 51 72.5
Lalb_Chr14g0367721 Lupinus albus HOM05D006584 ORTHO05D007640 4.1e-10 68.6 51 74.5
Nitab4.5_0001584g0100 Nicotiana tabacum HOM05D006584 ORTHO05D007640 4.1e-10 68.6 51 70.6
arahy.Tifrunner.gnm1.ann1.GYHR0X Arachis hypogaea HOM05D001150 ORTHO05D007640 5.4e-10 68.2 58 69.0
COL.COLO4_21049 Corchorus olitorius HOM05D006584 ORTHO05D007640 7.0e-10 67.8 51 68.6
HPP92_026784 Vanilla planifolia HOM05D006584 ORTHO05D007640 7.0e-10 67.8 52 71.2
Pp3c16_3940 Physcomitrium patens HOM05D006584 ORTHO05D007640 9.1e-10 67.4 51 66.7
AT5G26040 Arabidopsis thaliana HOM05D006584 ORTHO05D007640 1.2e-09 67.0 51 70.6
Hund19462 Selenicereus undatus HOM05D006584 ORTHO05D007640 1.2e-09 67.0 61 63.9
Sc23g0004490 Simmondsia chinensis HOM05D006584 ORTHO05D007640 1.6e-09 66.6 61 63.9
Gohir.A13G187100 Gossypium hirsutum HOM05D006584 ORTHO05D007640 2.0e-09 66.2 61 60.7
SalBow4G2021 Salvia bowleyana HOM05D006584 ORTHO05D007640 2.0e-09 66.2 51 70.6
CDE05G0889 Ceratophyllum demersum HOM05D006584 ORTHO05D007640 2.7e-09 65.9 51 66.7
PSO063G1048 Papaver somniferum HOM05D006584 ORTHO05D007640 2.7e-09 65.9 51 74.5
Gohir.D13G193900 Gossypium hirsutum HOM05D006584 ORTHO05D007640 4.5e-09 65.1 51 66.7
Gorai.013G220000 Gossypium raimondii HOM05D006584 ORTHO05D007640 4.5e-09 65.1 51 66.7
HanXRQChr17g0538441 Helianthus annuus HOM05D006584 ORTHO05D007640 4.5e-09 65.1 52 71.2
Lsat_1_v5_gn_3_24361 Lactuca sativa HOM05D006584 ORTHO05D007640 4.5e-09 65.1 52 71.2
MBI01_g09962_MAGBIO Magnolia biondii HOM05D006584 ORTHO05D007640 4.5e-09 65.1 61 60.7
MSTRG.11661 Avicennia marina HOM05D006584 ORTHO05D007640 5.9e-09 64.7 51 68.6
MELO3C016865.2 Cucumis melo HOM05D006584 ORTHO05D007640 5.9e-09 64.7 51 66.7
Duzib168G0725 Durio zibethinus HOM05D006584 ORTHO05D007640 5.9e-09 64.7 51 64.7
Duzib150G0622 Durio zibethinus HOM05D006584 ORTHO05D007640 7.7e-09 64.3 165 33.3
Os06g0571100 Oryza sativa ssp. japonica HOM05D006584 ORTHO05D007640 1.0e-08 63.9 51 64.7
SGA_v2.0_scaffold88G27225 Striga asiatica HOM05D006584 ORTHO05D007640 1.0e-08 63.9 61 62.3
CBR_g50289 Chara braunii HOM05D006584 ORTHO05D007640 3.8e-08 62.0 51 66.7
Pp3c6_24640 Physcomitrium patens HOM05D006584 ORTHO05D007640 3.8e-08 62.0 51 62.7
AagrBONN_evm.TU.Sc2ySwM_368.1186 Anthoceros agrestis HOM05D006584 ORTHO05D007640 9.4e-07 57.4 52 55.8
SMO228G0123 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.6e-06 56.6 51 58.8
FAN27G2179 Fragaria x ananassa HOM05D006584 ORTHO05D007640 3.6e-06 55.5 156 33.3


User provided reference genes

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