Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0269811 Rosa chinensis HOM05D000491 ORTHO05D048651 6.0e-49 197.2 100 100.0
MD01G1081100 Malus domestica HOM05D000491 ORTHO05D048651 8.1e-14 80.5 49 77.6
RcHm_v2.0_Chr1g0359521 Rosa chinensis HOM05D000491 ORTHO05D000359 1.7e-11 72.8 45 77.8
MD01G1081000 Malus domestica HOM05D000491 ORTHO05D000359 4.2e-10 68.2 73 52.1
RcHm_v2.0_Chr1g0359511 Rosa chinensis HOM05D000491 ORTHO05D000359 7.1e-10 67.4 76 50.0
ClCG05G000800 Citrullus lanatus HOM05D000491 ORTHO05D000359 9.3e-10 67.0 80 47.5
Prupe.2G188700 Prunus persica HOM05D000491 ORTHO05D000359 3.5e-09 65.1 43 69.8
Dinv38823 Davidia involucrata HOM05D000491 ORTHO05D000359 1.8e-08 62.8 108 34.3
TAR629G1504 Trochodendron aralioides HOM05D000491 ORTHO05D000359 1.8e-08 62.8 95 36.8
Lalb_Chr10g0100551 Lupinus albus HOM05D000491 ORTHO05D000359 6.7e-08 60.8 83 42.2
PGSC0003DMG400019601 Solanum tuberosum HOM05D000491 ORTHO05D000359 6.7e-08 60.8 76 46.1
Nitab4.5_0003639g0030 Nicotiana tabacum HOM05D000491 ORTHO05D000359 1.1e-07 60.1 76 44.7
Peaxi162Scf00717g00322 Petunia axillaris HOM05D000491 ORTHO05D000359 1.1e-07 60.1 75 42.7
Lj1A1017T55 Lonicera japonica HOM05D000491 ORTHO05D000359 1.5e-07 59.7 81 42.0
Solyc06g051970.3 Solanum lycopersicum HOM05D000491 ORTHO05D000359 1.5e-07 59.7 76 44.7
Sopen06g018020 Solanum pennellii HOM05D000491 ORTHO05D000359 1.5e-07 59.7 76 44.7
TPR.G39806 Trifolium pratense HOM05D000491 ORTHO05D000359 1.5e-07 59.7 76 44.7
HanXRQChr04g0120571 Helianthus annuus HOM05D000491 ORTHO05D000359 1.9e-07 59.3 76 44.7
PGR042G3146 Punica granatum HOM05D000491 ORTHO05D000359 2.5e-07 58.9 129 30.2
ECA236G3707 Erigeron canadensis HOM05D000491 ORTHO05D000359 3.3e-07 58.5 74 44.6
Nn3g18989 Nelumbo nucifera HOM05D000491 ORTHO05D000359 3.3e-07 58.5 75 44.0
Peaxi162Scf00618g00331 Petunia axillaris HOM05D000491 ORTHO05D000359 3.3e-07 58.5 77 46.8
DCAR_008921 Daucus carota HOM05D000491 ORTHO05D000359 5.7e-07 57.8 42 59.5
Lj1A1019T48 Lonicera japonica HOM05D000491 ORTHO05D000359 5.7e-07 57.8 68 45.6
Rhsim03G0208600 Rhododendron simsii HOM05D000491 ORTHO05D000359 5.7e-07 57.8 42 59.5
vmacro06533 Vaccinium macrocarpon HOM05D000491 ORTHO05D000359 5.7e-07 57.8 65 46.2
Ciclev10009236m.g Citrus clementina HOM05D000491 ORTHO05D000359 7.4e-07 57.4 80 41.2
Eucgr.E00051 Eucalyptus grandis HOM05D000491 ORTHO05D000359 7.4e-07 57.4 83 37.3
Dinv35332 Davidia involucrata HOM05D000491 ORTHO05D000359 9.6e-07 57.0 75 42.7
MBI07_g39843_MAGBIO Magnolia biondii HOM05D000491 ORTHO05D000359 9.6e-07 57.0 69 46.4
Potri.015G013200 Populus trichocarpa HOM05D000491 ORTHO05D000359 9.6e-07 57.0 79 40.5
Sabra03G0101900 Salix brachista HOM05D000491 ORTHO05D000359 9.6e-07 57.0 49 51.0
Dinv29284 Davidia involucrata HOM05D000491 ORTHO05D000359 1.3e-06 56.6 75 41.3
Lsat_1_v5_gn_7_1101 Lactuca sativa HOM05D000491 ORTHO05D000359 1.3e-06 56.6 74 44.6
Lalb_Chr10g0100561 Lupinus albus HOM05D000491 ORTHO05D000359 1.3e-06 56.6 76 40.8
MBI06_g46247_MAGBIO Magnolia biondii HOM05D000491 ORTHO05D000359 1.3e-06 56.6 43 55.8
RcHm_v2.0_Chr7g0194291 Rosa chinensis HOM05D000491 ORTHO05D000359 1.3e-06 56.6 75 45.3
Solyc03g083320.4 Solanum lycopersicum HOM05D000491 ORTHO05D000359 1.3e-06 56.6 75 42.7
Ciclev10023916m.g Citrus clementina HOM05D000491 ORTHO05D000359 1.6e-06 56.2 85 40.0
Eucgr.K00380 Eucalyptus grandis HOM05D000491 ORTHO05D000359 1.6e-06 56.2 78 39.7
DCAR_020322 Daucus carota HOM05D000491 ORTHO05D000359 2.1e-06 55.8 39 61.5
Migut.F00215 Erythranthe guttata HOM05D000491 ORTHO05D000359 2.1e-06 55.8 75 41.3
Lj3g0025733 Lotus japonicus HOM05D000491 ORTHO05D000359 2.1e-06 55.8 39 64.1
Nn1g00242 Nelumbo nucifera HOM05D000491 ORTHO05D000359 2.1e-06 55.8 75 41.3
Nitab4.5_0000258g0200 Nicotiana tabacum HOM05D000491 ORTHO05D000359 2.1e-06 55.8 79 40.5
Oeu037067.1 Olea europaea HOM05D000491 ORTHO05D000359 2.1e-06 55.8 75 41.3
QL09p009300 Quercus lobata HOM05D000491 ORTHO05D000359 2.1e-06 55.8 75 41.3
PGSC0003DMG401009127 Solanum tuberosum HOM05D000491 ORTHO05D000359 2.1e-06 55.8 75 41.3
CAN.G968.2 Capsicum annuum HOM05D000491 ORTHO05D000359 2.8e-06 55.5 75 40.0
Cc02_g01590 Coffea canephora HOM05D000491 ORTHO05D000359 2.8e-06 55.5 75 41.3
CsaV3_3G008040 Cucumis sativus L. HOM05D000491 ORTHO05D000359 2.8e-06 55.5 76 42.1
ECA233G6259 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.8e-06 55.5 75 42.7
Hund11382 Selenicereus undatus HOM05D000491 ORTHO05D000359 2.8e-06 55.5 80 42.5
MSTRG.8655 Avicennia marina HOM05D000491 ORTHO05D000359 3.7e-06 55.1 75 41.3
A09p06540 Brassica napus HOM05D000491 ORTHO05D000359 3.7e-06 55.1 85 40.0
BraA09t36299Z Brassica rapa HOM05D000491 ORTHO05D000359 3.7e-06 55.1 85 40.0
Cpa.g.sc96.19 Carica papaya HOM05D000491 ORTHO05D000359 3.7e-06 55.1 121 31.4
MBI06_g41628_MAGBIO Magnolia biondii HOM05D000491 ORTHO05D000359 3.7e-06 55.1 80 37.5
QL02p030130 Quercus lobata HOM05D000491 ORTHO05D000359 3.7e-06 55.1 83 38.6
Sc01g0002670 Simmondsia chinensis HOM05D000491 ORTHO05D000359 3.7e-06 55.1 76 42.1
Atru.chr12.2190 Acer truncatum HOM05D000491 ORTHO05D000359 4.8e-06 54.7 39 61.5
Cfa011988 Carpinus fangiana HOM05D000491 ORTHO05D000359 4.8e-06 54.7 85 36.5
Duzib084G1384 Durio zibethinus HOM05D000491 ORTHO05D000359 4.8e-06 54.7 75 38.7
FAN03G1701 Fragaria x ananassa HOM05D000491 ORTHO05D000359 4.8e-06 54.7 77 37.7
Lsat_1_v5_gn_3_15500 Lactuca sativa HOM05D000491 ORTHO05D000359 4.8e-06 54.7 83 38.6
Psat5g078520 Pisum sativum HOM05D000491 ORTHO05D000359 4.8e-06 54.7 39 61.5
QL09p009325 Quercus lobata HOM05D000491 ORTHO05D000359 4.8e-06 54.7 39 59.0
Sabra12G0016700 Salix brachista HOM05D000491 ORTHO05D000359 4.8e-06 54.7 75 41.3
Sabra15G0010700 Salix brachista HOM05D000491 ORTHO05D000359 4.8e-06 54.7 85 36.5
COL.COLO4_10717 Corchorus olitorius HOM05D000491 ORTHO05D000359 6.2e-06 54.3 40 62.5
Haze_09084 Corylus avellana HOM05D000491 ORTHO05D000359 6.2e-06 54.3 85 38.8
HanXRQChr06g0167111 Helianthus annuus HOM05D000491 ORTHO05D000359 6.2e-06 54.3 83 38.6
Peaxi162Scf00716g00018 Petunia axillaris HOM05D000491 ORTHO05D000359 6.2e-06 54.3 78 39.7
Potri.012G015100 Populus trichocarpa HOM05D000491 ORTHO05D000359 6.2e-06 54.3 75 41.3
SEGI_21845 Sequoiadendron giganteum HOM05D000491 ORTHO05D000359 6.2e-06 54.3 76 39.5
Thecc.03G300200 Theobroma cacao HOM05D000491 ORTHO05D000359 6.2e-06 54.3 69 42.0
EL10Ac1g00266 Beta vulgaris HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 41.3
Haze_00214 Corylus avellana HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 40.0
DCAR_024998 Daucus carota HOM05D000491 ORTHO05D000359 8.2e-06 53.9 61 47.5
Migut.A00138 Erythranthe guttata HOM05D000491 ORTHO05D000359 8.2e-06 53.9 76 39.5
Eucgr.A01457 Eucalyptus grandis HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 40.0
FvH4_7g31620 Fragaria vesca HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 40.0
FAN06G3232 Fragaria x ananassa HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 40.0
FAN18G1835 Fragaria x ananassa HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 41.3
MD07G1288800 Malus domestica HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 38.7
Nitab4.5_0004506g0130 Nicotiana tabacum HOM05D000491 ORTHO05D000359 8.2e-06 53.9 78 38.5
Nitab4.5_0011695g0010 Nicotiana tabacum HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 40.0
Oeu037071.1 Olea europaea HOM05D000491 ORTHO05D000359 8.2e-06 53.9 79 39.2
Peaxi162Scf00477g00019 Petunia axillaris HOM05D000491 ORTHO05D000359 8.2e-06 53.9 85 36.5
GSVIVG01038549001 Vitis vinifera HOM05D000491 ORTHO05D000359 8.2e-06 53.9 75 41.3


User provided reference genes

Program Settings