Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.5e-264 915.6 457 100.0
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.6e-250 867.8 457 94.3
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 4.7e-250 867.5 457 94.3
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.0e-249 866.3 457 94.1
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.6e-248 861.7 457 93.4
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 3.2e-238 828.2 457 89.5
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 7.3e-235 817.0 458 88.6
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 2.7e-229 798.5 458 86.0
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.3e-220 768.8 458 83.2
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 9.5e-219 763.5 450 84.0
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 2.3e-217 758.8 457 82.3
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 6.8e-217 757.3 458 82.3
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.2e-216 756.5 459 83.0
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 2.9e-215 751.9 459 82.4
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 3.8e-215 751.5 459 82.8
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 4.9e-215 751.1 458 82.5
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.2e-213 746.5 457 81.2
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 7.8e-213 743.8 457 81.0
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 7.8e-213 743.8 457 80.7
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-212 743.4 457 80.7
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-212 743.4 457 80.7
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 2.3e-212 742.3 453 80.1
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 3.0e-212 741.9 457 80.5
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 8.6e-212 740.3 449 80.0
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.5e-211 739.6 454 81.7
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.3e-211 738.4 457 81.8
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 3.3e-211 738.4 459 80.4
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 4.3e-211 738.0 452 81.6
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.3e-211 738.0 454 80.4
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.6e-210 736.1 440 81.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 2.8e-210 735.3 458 80.8
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 2.8e-210 735.3 443 81.7
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.4e-209 732.3 446 80.7
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 8.9e-209 730.3 455 79.1
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 3.4e-208 728.4 443 80.8
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 3.4e-208 728.4 443 80.8
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.4e-208 728.0 458 79.9
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 7.6e-208 727.2 443 80.6
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.7e-207 726.1 453 79.2
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.2e-207 725.7 443 80.4
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 3.8e-207 724.9 443 80.4
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 3.8e-207 724.9 447 79.9
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 4.9e-207 724.5 455 78.9
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.9e-206 722.6 446 80.0
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 7.1e-206 720.7 451 79.6
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.2e-205 719.9 449 78.6
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.1e-205 719.2 457 79.0
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 2.1e-205 719.2 445 79.8
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.7e-205 718.8 457 77.9
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 3.5e-205 718.4 461 78.1
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.6e-205 718.0 457 77.9
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.0e-204 716.8 452 77.2
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 2.3e-204 715.7 458 77.9
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 6.6e-204 714.1 457 77.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 8.7e-204 713.8 449 79.1
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.1e-203 713.4 457 77.7
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 3.3e-203 711.8 457 79.4
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 4.3e-203 711.4 471 76.2
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 4.8e-202 708.0 445 79.8
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 6.2e-202 707.6 440 78.4
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.1e-201 706.8 453 77.3
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.1e-201 706.8 453 77.3
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 4.0e-201 704.9 472 76.7
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 6.9e-201 704.1 442 77.4
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.5e-200 703.0 457 77.7
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.5e-200 701.4 424 80.9
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.7e-199 699.5 458 78.2
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.7e-199 699.5 449 77.5
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 6.4e-199 697.6 460 76.5
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.1e-198 696.8 447 76.3
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.1e-198 696.8 462 76.2
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.1e-198 696.8 458 75.8
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.9e-198 696.0 452 77.7
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 2.4e-198 695.7 460 76.5
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 2.4e-198 695.7 471 74.3
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.2e-197 693.3 446 75.6
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.2e-197 693.3 453 76.6
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.6e-197 693.0 458 75.3
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.7e-197 692.2 446 76.0
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 6.0e-197 691.0 449 76.8
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 6.0e-197 691.0 471 75.2
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.1e-196 688.0 459 74.7
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.5e-195 686.4 471 74.9
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 3.3e-195 685.3 458 75.1
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 5.6e-195 684.5 457 74.0
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.3e-194 683.3 475 74.3
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.1e-194 682.6 471 74.3
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 6.9e-193 677.6 472 72.5
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.2e-192 676.8 450 76.2
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 1.5e-192 676.4 472 73.9
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 3.4e-192 675.2 470 73.2
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 4.5e-192 674.9 423 78.3
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 5.8e-192 674.5 440 76.4
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.7e-191 672.9 445 74.8
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.9e-191 672.2 451 75.2
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.2e-190 668.3 445 74.4
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 2.3e-188 662.5 442 75.3
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.0e-188 662.1 459 73.4
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 1.1e-187 660.2 564 63.7
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 8.1e-186 654.1 458 73.4
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.4e-185 652.5 443 74.0
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.9e-185 651.0 455 72.5
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.9e-185 651.0 458 72.9
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.1e-182 643.7 450 72.9
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 7.1e-182 641.0 455 70.3
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.2e-181 640.2 425 72.9
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 7.4e-179 630.9 456 70.2
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.8e-178 628.2 454 69.8
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.4e-177 625.9 447 71.1
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.5e-176 623.2 373 80.4
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 2.6e-176 622.5 487 66.1
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 7.6e-176 620.9 445 69.7
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 3.6e-173 612.1 453 67.8
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 6.1e-173 611.3 454 68.1
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 3.7e-170 602.1 450 68.4
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.1e-169 600.5 463 65.9
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.8e-167 592.0 429 68.8
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.5e-166 589.3 431 68.7
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.7e-163 578.2 458 67.2
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.5e-160 568.5 362 77.9
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.0e-156 557.4 403 66.3
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 5.9e-152 541.6 397 70.8
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 9.4e-150 534.3 359 74.7
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.2e-149 533.9 427 61.6
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.1e-145 520.8 453 60.9
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 8.5e-143 511.1 351 71.5
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 4.2e-142 508.8 367 68.1
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 6.8e-140 501.5 427 61.6
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 4.8e-138 495.4 455 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 8.0e-133 478.0 467 54.0
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.8e-132 476.9 465 54.2
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 6.8e-132 474.9 323 73.1
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.7e-127 460.3 457 55.6
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.9e-111 406.0 320 66.2
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.4e-108 397.5 303 65.0
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.8e-93 346.7 256 69.9
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 2.4e-92 343.6 208 83.7
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.7e-90 337.4 211 79.6
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 8.4e-90 335.1 258 63.6
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 5.4e-81 305.8 438 43.6
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 4.3e-78 296.2 197 75.1
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.8e-69 266.9 180 74.4
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.1e-52 211.8 154 71.4
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 1.9e-49 201.1 138 72.5
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 1.8e-39 167.9 222 45.5
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 3.1e-36 157.1 156 54.5
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 3.8e-34 150.2 148 55.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 4.4e-22 110.2 61 88.5
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.0e-11 74.7 56 60.7
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 3.4e-06 57.4 88 42.0


User provided reference genes

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