Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 2324.7 1274 100.0
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 2139.0 1264 90.8
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2094.3 1264 89.5
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2063.5 1264 88.3
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2056.6 1274 86.8
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2049.6 1264 88.5
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1896.7 1181 84.3
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1854.7 1264 79.6
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1841.6 1181 82.7
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1673.3 1317 68.4
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1636.3 1222 71.1
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1627.1 1184 71.5
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1622.1 1182 71.4
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1615.9 1181 71.0
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1615.9 1188 71.0
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1614.0 1329 67.1
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1613.2 1184 72.0
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1604.7 1181 72.0
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1593.6 1183 71.3
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1592.8 1172 71.5
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1590.5 1176 69.6
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1590.1 1181 71.5
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1585.9 1180 69.7
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1571.6 1214 69.3
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1570.4 1186 70.2
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1569.3 1179 69.4
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1568.1 1181 70.6
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1563.5 1179 68.5
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1559.7 1179 70.1
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1558.9 1180 69.7
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1557.3 1179 70.7
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1554.3 1196 68.9
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1551.6 1182 68.7
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1546.2 1185 68.2
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1543.5 1181 69.0
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1543.1 1178 69.0
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1541.9 1180 68.1
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1541.2 1184 70.5
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1540.8 1250 67.0
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1540.8 1180 70.7
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1540.4 1187 68.2
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1539.6 1279 65.7
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1532.3 1180 67.6
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1521.5 1179 68.7
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1521.5 1178 68.7
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1517.3 1188 67.5
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1513.4 1182 67.1
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1511.5 1174 67.7
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1510.4 1289 63.8
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1501.1 1190 65.6
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1499.6 1182 66.1
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1498.4 1189 67.1
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1498.4 1190 65.0
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1497.3 1195 66.9
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1489.9 1331 61.8
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1482.6 1178 65.1
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1475.3 1183 66.3
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1471.4 1181 65.0
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1461.8 1182 64.7
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1445.6 1183 65.8
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1436.8 1197 64.2
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1426.4 1179 63.3
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1426.4 1181 65.0
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1414.4 1180 64.6
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1411.7 1176 62.9
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1408.7 1183 63.7
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1408.7 1193 63.0
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1407.1 1201 64.2
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1404.4 1178 63.8
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1404.0 1282 60.7
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1401.3 1192 63.5
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1401.3 1192 63.5
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1398.3 1185 61.7
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1397.9 1261 61.1
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1388.6 1178 63.2
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1383.2 1183 62.9
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1379.0 1239 61.2
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1374.0 1196 61.0
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1370.9 1196 62.2
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1370.9 1204 61.3
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1363.2 1212 60.2
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1359.0 1217 60.1
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1349.0 1195 61.0
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1347.4 1195 61.0
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1347.4 1194 60.7
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1347.4 1194 60.7
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1346.6 1198 59.6
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1338.2 1197 59.6
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1330.9 1211 59.8
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1329.7 1182 61.4
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1319.7 1084 63.9
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1305.4 1203 58.9
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1300.4 1183 58.7
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1282.3 1179 58.8
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1266.5 1177 60.7
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1193.7 1254 54.7
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1190.3 1184 55.9
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1184.1 1167 55.9
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1180.2 957 66.4
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1174.1 1173 56.8
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1155.6 1198 53.7
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1154.4 1234 52.0
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1137.5 1182 52.2
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1122.8 1013 59.7
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1089.3 1208 51.7
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 5.1e-302 1041.6 1241 48.6
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.0e-294 1017.3 678 76.4
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 6.6e-294 1014.6 1224 48.4
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 3.8e-257 892.5 587 77.5
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.8e-251 873.6 1187 45.9
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.9e-225 786.6 1113 44.0
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 4.9e-188 662.9 544 67.6
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 2.4e-179 634.0 429 74.1
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 7.8e-170 602.4 823 47.6
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 7.3e-168 595.9 457 69.4
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.6e-165 587.4 545 60.2
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 7.1e-155 552.7 682 50.3
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.8e-153 548.1 1192 32.3
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 5.1e-153 546.6 1207 32.6
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.2e-149 535.4 1205 33.0
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.0e-149 534.6 1207 34.9
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 9.0e-142 509.2 609 47.6
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.3e-132 478.8 1142 32.5
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 5.0e-132 476.9 1187 32.4
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.8e-110 405.2 1048 31.9
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.7e-101 374.8 1041 30.5
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.8e-94 352.1 1298 26.7
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 7.5e-88 330.1 330 55.2
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.1e-77 295.4 247 62.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 3.5e-77 294.7 479 38.8
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.7e-76 292.4 479 38.8
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.5e-45 188.3 217 50.7
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 7.4e-43 180.6 1246 24.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 6.7e-36 157.5 186 49.5
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-33 150.2 348 32.5
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 9.0e-33 147.1 146 59.6
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.2e-29 136.7 1245 22.3
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.7e-29 135.6 92 71.7
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.9e-29 134.0 129 55.0
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 9.7e-27 127.1 133 51.9
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 5.7e-19 101.3 124 46.0
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 3.7e-18 98.6 112 57.1
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.4e-17 96.7 58 75.9
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 2.0e-16 92.8 73 57.5
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 2.2e-15 89.4 72 56.9
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.4e-14 86.7 61 73.8
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.9e-14 86.3 69 63.8
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.2e-13 83.6 191 34.6
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.6e-13 83.2 71 54.9
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.7e-13 82.4 53 73.6
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.7e-13 82.4 53 73.6
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.1e-11 77.0 95 36.8
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 7.7e-08 64.3 42 73.8
Glyma.11G134400 Glycine max HOM05D033723 ORTHO05D214704 1.3e-07 63.5 59 64.4
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 2.2e-07 62.8 44 65.9
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-06 60.5 77 45.5
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 3.2e-06 58.9 41 73.2
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 4.2e-06 58.5 76 42.1


User provided reference genes

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